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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061988 ID=TCONS_00061988|Name=TCONS_00061988|organism=Clytia hemisphaerica|type=transcript|length=1582bp
CCCCAAAAAAATCGGCTGCTGGAGGAGAGAGCAGTCGATCCCTCTGCCTC
CCCTACTACTGCGTTACTGAATGGAATGAAAGTGAAGATTCGTACTGTAA
GTTTATGTATTGAAAAAGAAGTCTTGTAATTAAAATGATAATAGACAAAT
GttacaaaaaataaagatatctaGCTAGATTCTCAAAATTGTATTGACTg
ttttaaattctaaattttcgaAATCTCTCATTGTTCAGGAACATGCATCA
TTCACACAATATTGATGGAAGCACATGAGTTCCAGACTTGAGGTGATTGC
TCGGCATCCCATCTGAAAGAAAGAACGTATTCACCGGCTGGTAAATCACT
TGGTATATGCACCAAATCAACAATGGAGAATGGGAAATGTTGAAGATGGA
AATATCTTCGAACTCCGTAACCGTAGAGATCTGTTTTTTGTGGCTTAAAT
TGTGTGCCGTGTGGACAGCCGGTAGTGTTGGATAAAAAGCCACCGTAATC
TCCAATGCATCCTGGGATTGGGTTCTTGGTCCATTGTGAGCCTTCTGGGT
AGGTTCCTTTGGTGACACGTGTAGCTTCAATTTCCACCCTGCTTGTTTTA
TCCTCACCATATTGAATCCATTGTTTGTCGCCGATAAACTCCAAAGGAAT
CTGTTGAAAACATTCTTCGGTCAATTTGGAATAACCTTCTTCGGGGAGTT
TGCATAATCTATATGAGTAACCGCCACCGTGGTTGGCAAAGATTCCCCAA
ATGACTTCCACAACTGTATCACGGACCCATTCAGTGACAACAAAGTCGTA
CGGCATATTAACGTCTACAAGTTTAGGGCCAAATCCGAACCCACCTcgat
tttgtgagcattttccACCAATACACCCATTGATGTTACCGCCTGCAACA
CCACAAGGACTATCAATAGGGGCAGTGCCTGGTGCTCTCCAAGGATGAGT
TAAAATTTCATCTTGGTTTGGAGCATGCGGATATGTGCGGAGTTCAGGAT
CAAAAATGGTCGGTTCCGTAATTCTGGTATTGTTCTTGTACCAAAAGCAA
GTGAGCCCTGGTGATTTAAAATCTTCGCAAGTATATTTTCCATTGCAAAT
CACATTTTTTGGGATATTTTCACCGGCTAAACATTGTTTACGTGATTTAG
TACCAACATAATCGAAAACCCAAGATCCATCTTGCATTTGAATCCATTGT
TTGAATTCTAACCATGACAACGGTTCCAACATAGCAGCATGGCTGTCTAC
ATGCTGGACGTAAAGGCAACCGAGGATAACCAAAAACTGGACAATCAACA
AACGCATCTTGTTTGCGAGAAAGATAACATCAAAGTAGCAACAACCCAAG
ATGAAAAATCGTATAAAGTAAAGTAAAGTGGAATTTGACCCTCTGTCAAG
ACATGAAAAGAATGGATTCAAAACTAGACTTTATTGTTTTTATAGGCATA
ATTTTCGCCAGCTCAAGTTCCTCTGATTCTGATACACTGACTGTAAcgta
atacacgctttttcttttataagaataacttctataagaatatcagggtg
agatttcgggtttaaaacaataggcctattgt Run BLAST on NCBI transcript from alignment at scaffold_361:435630..437211- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061988 ID=TCONS_00061988|Name=TCONS_00061988|organism=Clytia hemisphaerica|type=transcript|length=1582bp|location=Sequence derived from alignment at scaffold_361:435630..437211- (Clytia hemisphaerica)
CCCCAAAAAAATCGGCTGCTGGAGGAGAGAGCAGTCGATCCCTCTGCCTC
CCCTACTACTGCGTTACTGAATGGAATGAAAGTGAAGATTCGTACTGTAA
GTTTATGTATTGAAAAAGAAGTCTTGTAATTAAAATGATAATAGACAAAT
GTTACAAAAAATAAAGATATCTAGCTAGATTCTCAAAATTGTATTGACTG
TTTTAAATTCTAAATTTTCGAAATCTCTCATTGTTCAGGAACATGCATCA
TTCACACAATATTGATGGAAGCACATGAGTTCCAGACTTGAGGTGATTGC
TCGGCATCCCATCTGAAAGAAAGAACGTATTCACCGGCTGGTAAATCACT
TGGTATATGCACCAAATCAACAATGGAGAATGGGAAATGTTGAAGATGGA
AATATCTTCGAACTCCGTAACCGTAGAGATCTGTTTTTTGTGGCTTAAAT
TGTGTGCCGTGTGGACAGCCGGTAGTGTTGGATAAAAAGCCACCGTAATC
TCCAATGCATCCTGGGATTGGGTTCTTGGTCCATTGTGAGCCTTCTGGGT
AGGTTCCTTTGGTGACACGTGTAGCTTCAATTTCCACCCTGCTTGTTTTA
TCCTCACCATATTGAATCCATTGTTTGTCGCCGATAAACTCCAAAGGAAT
CTGTTGAAAACATTCTTCGGTCAATTTGGAATAACCTTCTTCGGGGAGTT
TGCATAATCTATATGAGTAACCGCCACCGTGGTTGGCAAAGATTCCCCAA
ATGACTTCCACAACTGTATCACGGACCCATTCAGTGACAACAAAGTCGTA
CGGCATATTAACGTCTACAAGTTTAGGGCCAAATCCGAACCCACCTCGAT
TTTGTGAGCATTTTCCACCAATACACCCATTGATGTTACCGCCTGCAACA
CCACAAGGACTATCAATAGGGGCAGTGCCTGGTGCTCTCCAAGGATGAGT
TAAAATTTCATCTTGGTTTGGAGCATGCGGATATGTGCGGAGTTCAGGAT
CAAAAATGGTCGGTTCCGTAATTCTGGTATTGTTCTTGTACCAAAAGCAA
GTGAGCCCTGGTGATTTAAAATCTTCGCAAGTATATTTTCCATTGCAAAT
CACATTTTTTGGGATATTTTCACCGGCTAAACATTGTTTACGTGATTTAG
TACCAACATAATCGAAAACCCAAGATCCATCTTGCATTTGAATCCATTGT
TTGAATTCTAACCATGACAACGGTTCCAACATAGCAGCATGGCTGTCTAC
ATGCTGGACGTAAAGGCAACCGAGGATAACCAAAAACTGGACAATCAACA
AACGCATCTTGTTTGCGAGAAAGATAACATCAAAGTAGCAACAACCCAAG
ATGAAAAATCGTATAAAGTAAAGTAAAGTGGAATTTGACCCTCTGTCAAG
ACATGAAAAGAATGGATTCAAAACTAGACTTTATTGTTTTTATAGGCATA
ATTTTCGCCAGCTCAAGTTCCTCTGATTCTGATACACTGACTGTAACGTA
ATACACGCTTTTTCTTTTATAAGAATAACTTCTATAAGAATATCAGGGTG
AGATTTCGGGTTTAAAACAATAGGCCTATTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061988-exon-scaffold_361-1575043694:435630..437211 | TCONS_00061988-exon-scaffold_361-1575043694:435630..437211 | Clytia hemisphaerica | exon |
| TCONS_00061988-exon-scaffold_361-1510915933:435630..437211 | TCONS_00061988-exon-scaffold_361-1510915933:435630..437211 | Clytia hemisphaerica | exon |
| TCONS_00061988-exon-scaffold_361-1491911889:435630..437211 | TCONS_00061988-exon-scaffold_361-1491911889:435630..437211 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:435630..437211 - |
Blast
The following BLAST results are available for this feature:
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