TCONS_00061983 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061983
Unique NameTCONS_00061983
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2454

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061983 ID=TCONS_00061983|Name=TCONS_00061983|organism=Clytia hemisphaerica|type=transcript|length=2454bp
tttcagagataaaaaatagaaagataTAGAAGCCATACTAGGCTTTCTTA
ATGGGTGGTCAACAATAAATCCTCCGAGTGTAGAAAAACaagataaaata
aacaaaacaaagcgTAATGCGCACTTTTTACTTCGTTACCATTCTCCTGG
TAACCATCACCTTGGCAACATGTAAAAAGAAGACTGGGGCTGGATTGTTC
ACTGCCAGTATCGTTGAAGATTTAGTGAAAAATGAAGTTCAAAAGAAAAT
GCCATCTGCTGCTCACACTAAAACTATGACAGgcGTGCATTTGAAAGAAG
CCACAGATGCCATCAACAAATTGGTCGACGAGTCCATTGTTGATCGAGTA
CAAGAAGCGGAGAGAGAAGTGTCCAAAATGTTATTGAAAAGTATCGAACA
TCACATTCAAGATGCTGGAAAAGCTCTCCTCAAAACTGACGAAGACTCGT
GCAAAGATCGCATCGAAGGTTGTAAAGAACTTGCTAACAGTAATGTTTGC
GAAACTTCCAAAGATGCTATGATTGTCAACTGTCCACACACTTGCAATTT
CTGTGGCATGTTGAGTGAGTTGAAAGACCAAAGCAAACAACAGACACAAT
CACAAGCAGAGCCAGAACGAAAGCCAAAACGAAAACATAAAAAGCGAAAA
CATCGACGTCACAAATCAGCACGTTTATCAGCAAATGAAGCCAACATGAT
CCATCAAAGCATGCTCGATCAGACAATCGATAATTCCAATCTACCAAACG
CTGTTTCATCATTCGGTCAAGAGAGCGTTCCACAAGCAACCGCGTCATCT
ACACCACAATCTGCTCCGGAAGATACTCAATCTCAGGATGCAGCTGATGC
GGCCGCCCAACAACAAGAGGCGGACGAGGCGCAGAAAGAACAAGAAGAGG
AAGAACTGagaaaacaacaacaagaagaTGAAGCGCGAAAACAGCAAGAa
atagaagaagaagaagaaagacagGCGGAAGAAAGACGACGAAAACGTAG
ACGAAGAAAGAAGCTTATTAAACAACACCAAGAACAAGCTGCTTTGGCCA
CTCCCGAGAAAGGTAAGAAGAGAACAAGACCTACCCGACCAATGACTGAC
GACACCGAcgaaaaacgagaaaaaacGTTTTCTAACGACGAAGACGAAAA
ATTCGACGAAAAGGTTACAAGTGACGCGACTGAAAAACGAGAAAAAACGA
CAATAAACGAGCATGCTTCACAAACATCCGAGATGGGCTCAGGGTCAGGA
TCGGGATCGGGGTCGGGAGAAGCAGAAGAAAAGGATGAGAAACTGGACGA
TGCTGCAGAATACACAACGAGTAATGTTGCGTCTGCTTTCTCGTCTCCCG
ACGTACTTGACGACGCACNGACGATGCTGCAGAATACACAACGAGTAATG
TTGCGTCTGCTTTCTCCTCTCCCGACGTCCTTGACGACGCACAAGAACCT
GAGACAAAACAAACCATCACAAACGTCATAAAATCTGTACAGAAAACCGA
CGATAAACAAACGAAGATAACGGCTAAACCTCAACCACAAGCTGCTATTA
AATTAAACCCCGTCTACGCTAAAGCCAGTCAGAAACCTCTTACATATCAA
CACAAAGCAGTTAGAGTAGCGAAACCAATAGCTTCATATCGTCAGGTAGC
AGTATCTTACCTACCTGCAGCCTCCTACCAGCACCCCGTTGCTGCCTACC
AACACCCCGCTGCCGCCTACCGCCAGCCATTGACATACTATAGACAACAT
GTTGCGACTTACAACAAGCAACTCACTACAAAGACCCAACAAAAGCCTCT
TACATTCAATCGAAAACCAGCCCATAATACTCGACAAAAACATATATCAA
CCAAATTTTTGGGAGCAATTAAAACGAAAGCTCCAGTACAACCGAAAGNA
AACATATATCAACTAAATTTCTGGGAGCAATTAAAACGAAAACTCCAGTA
CAACcgaaaacaaaacattcaaaaaagcttaagaaacatttgaaaagaaa
acataaaaaaatgaaagcgAAAAGCAATTCAGTTCGAAAATCGTCAATTA
AGAGCTCACAAGAAGCAGCAGATATCGTCGATGACGTTCTTGATAACATG
ACActgtgaaaatattgaaataaattttgaaaatgttagcTCTAGTTTAC
TTCGACGGCTTACTTTTcgccctgtctattctaatCGGTTGAGTTGGCGA
AAAGTGGGCGCAAAGTTGAACAAAATTTATCAATCGAGCATTAACAATAT
GTAGATATTGAAAACAGAAGGGACTCGGTGTGTATATAGCACGGAAATAA
ACTAACATTGACGGAGCCTTCAAGATTCTGAAGCTGACAAAGGAGTTATA
TGAACTTAGAGGATGAACATTatctagaaatttttttttgtagatGCATT
TAGTCATTCTAATTATTTTCCCATGTTGGGAACACTAATATGGTTTATAA
AAAT
Run BLAST on NCBI

transcript from alignment at scaffold_361:306226..310971-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061983 ID=TCONS_00061983|Name=TCONS_00061983|organism=Clytia hemisphaerica|type=transcript|length=4746bp|location=Sequence derived from alignment at scaffold_361:306226..310971- (Clytia hemisphaerica)
TTTCAGAGATAAAAAATAGAAAGATATAGAAGCCATACTAGGCTTTCTTA
ATGGGTGGTCAACAATAAATCCTCCGAGTGTAGAAAAACAAGATAAAATA
AACAAAACAAAGCGTAATGCGCACTTTTTACTTCGTTACCATTCTCCTGG
TAACCATCACCTTGGCAACATGTAAAAAGAAGACTGGGGCTGGATTGTTC
ACTGCCAGTATCGTTGAAGATTTAGTGAAAAATGAAGTTCAAAAGAAAAT
GCCATCTGCTGCTCACACTAAAACTATGACAGGTGGGTAGTTTTGCTCAG
AACTAATGAGAATACAAAACACACAAACAAGCCATCTTGGCTAACGCATA
TATCATAGTCAAGTTCCTAAGCAGTAACAATGTCCTTCTTGGCTCAGGAC
AAAGTTCCCTTCTTGGCTCAGGACAAAGTTCCTCCCTGGAATTTGCCATT
GAACTATATAACAAGTGAAACTGTAAACTAATCACATTTGTTGCCGACTA
CGAGTATACAAATCACCGTTAGTTCTTCAAAGGGTCATAACTTTTGATTA
GACATTGGCTTTTTTTATTGCATTTCTGAAATCTACGTGAAGTTGTAAGT
CAATTAGTGTACAATTTGAAAGTATTTGAAGGAAACTGGGGCCATAGGAG
CCTCTAAAAGTTGAAAGAGGTGAAACTTTCCATTTCTGAAAAGGGCTCGT
CATTAAACAAAACCAATAGTCAAAGCAATTTTTTTTTTCTACAGGCGTGC
ATTTGAAAGAAGCCACAGATGCCATCAACAAATTGGTCGACGAGTCCATT
GGTAAGTTTACGATTTCCAAGAAAACTTTTACCTACAGCCCACGCTTGTG
GTGGCTTGTAGCCTTTAGAAACGATTTACTGTGCAGCTAACACGCTGTTG
TGATGGCTTGTAGCCTTTAGAAAAGATTTACTGTGCAACTAACACGCTGT
TGTGATGGCTTGTAGTTCTTAGAAAAGATTCAACTAACATAGCATTCTTC
TCAAATATAGTGTCTTTTCACTTCCCACAAAGATGAATCTGTAGAGCTTT
CGCAACAACTGTTCACAATAAATGTTTTGTATTAAGACACGTAAAAACAC
TGACTTCAACCTTAACCTCCTGAATTGGAAATTAAGTCACTTATTTCCCA
TCCAAAATGCCAAATTGAAAGAAAAGACTAGATTCAATCCGTCATTCTAA
GTTTCTTGCTTGAGAAAGATTAAAGATTTTAACCTCTTCGAGGCTTAAAC
TCAACCATGCGTAAAACAAACATCATTCATTTGCCTTTCCAGTTGATCGA
GTACAAGAAGCGGAGAGAGAAGTGTCCAAAATGTTATTGAAAAGTATCGA
ACATCACATTCAAGATGCTGGAAAAGCTCTCCTCAAAACTGACGAAGGTA
TTAAACAACATTATATTATGACTATACAGAGTTCAAAAGTTCTGAAAATG
ACTGGTCCCTTTCTTACCCATTAGGATCCATGCTATACGACTATAATTCA
GGCATTGATAAATTATGGAAGGAAAGAATTGTTTATACAGTATTACTTCG
AATAAACGCCCCCTTCTTTTGAACGCCCCCTCGAATAAACACCCCTCCTA
AAAGGAAAATTATCAAATAAACGCCCCCTCAAATAAACGCCCCTTCGAAT
GAACTAGGGAAGGGGCGTTTATTAGAAACTTGTGACTTTAATACTTCAAT
ACCAGTGTTGATTGGGTTTGAAAAGGAAGATTTTAGTCTTCTTCTAACCA
GAGCAGTTTTCGATGCAATTTTAGTTGTTAAACCAAAGAAATTTTGCACT
AAAATCCTGATAAAGAACTAAAACAAAGGGTATATTTGCTCTAAATATTC
GACTTTAGACTAATATAATTTAATAAACGCCCCCTTTTTTTAAACACCCC
CCCTCGAATAAACGCCCCTCCTAAAATCGAAAAAATTAATAAACGCCCCG
GGCGTTTATTCGAAGTAATACGGTATTGAAATTATTTCGCAACAATCATC
GTATTATCATATAAAACTGTTATTACTGTATTACACAGATTATAAACAAA
TCATTTGTTTATGCCACATATAAAATTGTTTAAATACCTTTACTTATTAC
ATTAGACTCGTGCAAAGATCGCATCGAAGGTTGTAAAGAACTTGCTAACA
GTAATGTTTGCGAAACTTCCAAAGATGCTATGATTGTCAACTGTCCACAC
ACTTGCAATTTCTGTGGTAAGGAAACATGATGCTAGATACGTATGTAGGT
CTGCTTCAAAAAAAAGAAATGAAAAAGATCGTCTAGGGATAGAAGCGCTT
GGGAAAGTTGTCGATTTTTTCTTAAAAATATAGCTTTTTATGGGTCGGAA
TTTATATGTCGTGCTTAATTTTGTCTTTTAGTGGGTTTTAAACCAGTAAC
AATATGATTTTGAAGCAGATTACCAAAATATTATGATAGGGTGCTAAAAT
TATATTTATTCTAAGGACCGCATGCTCGCTTTATAAATATTTTTTGGACC
AACAGCCGTACGCAGTTCAAGATATAGACTTTAGTTAGATCTCTACGGTT
AGTGGTTAACTTTCTCTTTGTAAAATTTTGTATTTAAAAAGGAAAAAGAT
ACTCAAAAGAAGAAATATTTTTGTCTTTTCGTGTTAACCACTAACCAAAT
TACCATTGTTCATCTAAAAATATTTCCTAGAGAAACTCTCTAAGTCTAAG
CCTATTTTTCGAGGAAAAAGTTCTTGCACCAAAAATGTTTGCAGAAGTTT
CTGGAAAAATTGAAGATATAGTTTTTTTTCTAAATAAAAGATTAAATTAG
AAAAGAAAAACACGACAAATTTTATATCTTTTCGGTCTGTTTTCTAGGCA
TGTTGAGTGAGTTGAAAGACCAAAGCAAACAACAGACACAATCACAAGCA
GAGCCAGAACGAAAGCCAAAACGAAAACATAAAAAGCGAAAACATCGACG
TCACAAATCAGCACGTTTATCAGCAAATGAAGCCAACATGATCCATCAAA
GCATGCTCGATCAGACAATCGATAATTCCAATCTACCAAACGCTGTTTCA
TCATTCGGTCAAGAGAGCGTTCCACAAGCAACCGCGTCATCTACACCACA
ATCTGCTCCGGAAGATACTCAATCTCAGGATGCAGCTGATGCGGCCGCCC
AACAACAAGAGGCGGACGAGGCGCAGAAAGAACAAGAAGAGGAAGAACTG
AGAAAACAACAACAAGAAGATGAAGCGCGAAAACAGCAAGAAATAGAAGA
AGAAGAAGAAAGACAGGCGGAAGAAAGACGACGAAAACGTAGACGAAGAA
AGAAGCTTATTAAACAACACCAAGAACAAGCTGCTTTGGCCACTCCCGAG
AAAGGTAAGAAGAGAACAAGACCTACCCGACCAATGACTGACGACACCGA
CGAAAAACGAGAAAAAACGTTTTCTAACGACGAAGACGAAAAATTCGACG
AAAAGGTTACAAGTGACGCGACTGAAAAACGAGAAAAAACGACAATAAAC
GAGCATGCTTCACAAACATCCGAGATGGGCTCAGGGTCAGGATCGGGATC
GGGGTCGGGAGAAGCAGAAGAAAAGGATGAGAAACTGGACGATGCTGCAG
AATACACAACGAGTAATGTTGCGTCTGCTTTCTCGTCTCCCGACGTACTT
GACGACGCACNGACGATGCTGCAGAATACACAACGAGTAATGTTGCGTCT
GCTTTCTCCTCTCCCGACGTCCTTGACGACGCACAAGAACCTGAGACAAA
ACAAACCATCACAAACGTCATAAAATCTGTACAGAAAACCGACGATAAAC
AAACGAAGATAACGGCTAAACCTCAACCACAAGCTGCTATTAAATTAAAC
CCCGTCTACGCTAAAGCCAGTCAGAAACCTCTTACATATCAACACAAAGC
AGTTAGAGTAGCGAAACCAATAGCTTCATATCGTCAGGTAGCAGTATCTT
ACCTACCTGCAGCCTCCTACCAGCACCCCGTTGCTGCCTACCAACACCCC
GCTGCCGCCTACCGCCAGCCATTGACATACTATAGACAACATGTTGCGAC
TTACAACAAGCAACTCACTACAAAGACCCAACAAAAGCCTCTTACATTCA
ATCGAAAACCAGCCCATAATACTCGACAAAAACATATATCAACCAAATTT
TTGGGAGCAATTAAAACGAAAGCTCCAGTACAACCGAAAGNAAACATATA
TCAACTAAATTTCTGGGAGCAATTAAAACGAAAACTCCAGTACAACCGAA
AACAAAACATTCAAAAAAGCTTAAGAAACATTTGAAAAGAAAACATAAAA
AAATGAAAGCGAAAAGCAATTCAGTTCGAAAATCGTCAATTAAGAGCTCA
CAAGAAGCAGCAGATATCGTCGATGACGTTCTTGATAACATGACACTGTG
AAAATATTGAAATAAATTTTGAAAATGTTAGCTCTAGTTTACTTCGACGG
CTTACTTTTCGCCCTGTCTATTCTAATCGGTTGAGTTGGCGAAAAGTGGG
CGCAAAGTTGAACAAAATTTATCAATCGAGCATTAACAATATGTAGATAT
TGAAAACAGAAGGGACTCGGTGTGTATATAGCACGGAAATAAACTAACAT
TGACGGAGCCTTCAAGATTCTGAAGCTGACAAAGGAGTTATATGAACTTA
GAGGATGAACATTATCTAGAAATTTTTTTTTGTAGATGCATTTAGTCATT
CTAATTATTTTCCCATGTTGGGAACACTAATATGGTTTATAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038853XLOC_038853Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061983-exon-scaffold_361-1575043694:310690..310971TCONS_00061983-exon-scaffold_361-1575043694:310690..310971Clytia hemisphaericaexon
TCONS_00061983-exon-scaffold_361-1575043694:310171..310227TCONS_00061983-exon-scaffold_361-1575043694:310171..310227Clytia hemisphaericaexon
TCONS_00061983-exon-scaffold_361-1575043694:309575..309679TCONS_00061983-exon-scaffold_361-1575043694:309575..309679Clytia hemisphaericaexon
TCONS_00061983-exon-scaffold_361-1575043694:308756..308866TCONS_00061983-exon-scaffold_361-1575043694:308756..308866Clytia hemisphaericaexon
TCONS_00061983-exon-scaffold_361-1575043694:306226..308124TCONS_00061983-exon-scaffold_361-1575043694:306226..308124Clytia hemisphaericaexon
TCONS_00061983-exon-scaffold_361-1510915933:310690..310971TCONS_00061983-exon-scaffold_361-1510915933:310690..310971Clytia hemisphaericaexon
TCONS_00061983-exon-scaffold_361-1510915933:310171..310227TCONS_00061983-exon-scaffold_361-1510915933:310171..310227Clytia hemisphaericaexon
TCONS_00061983-exon-scaffold_361-1510915933:309575..309679TCONS_00061983-exon-scaffold_361-1510915933:309575..309679Clytia hemisphaericaexon
TCONS_00061983-exon-scaffold_361-1510915933:308756..308866TCONS_00061983-exon-scaffold_361-1510915933:308756..308866Clytia hemisphaericaexon
TCONS_00061983-exon-scaffold_361-1510915933:306226..308124TCONS_00061983-exon-scaffold_361-1510915933:306226..308124Clytia hemisphaericaexon
TCONS_00061983-exon-scaffold_361-1491911889:310690..310971TCONS_00061983-exon-scaffold_361-1491911889:310690..310971Clytia hemisphaericaexon
TCONS_00061983-exon-scaffold_361-1491911889:310171..310227TCONS_00061983-exon-scaffold_361-1491911889:310171..310227Clytia hemisphaericaexon
TCONS_00061983-exon-scaffold_361-1491911889:309575..309679TCONS_00061983-exon-scaffold_361-1491911889:309575..309679Clytia hemisphaericaexon
TCONS_00061983-exon-scaffold_361-1491911889:308756..308866TCONS_00061983-exon-scaffold_361-1491911889:308756..308866Clytia hemisphaericaexon
TCONS_00061983-exon-scaffold_361-1491911889:306226..308124TCONS_00061983-exon-scaffold_361-1491911889:306226..308124Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:306226..310971 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0399632	1.5689	1.71351	15.473	16.8828	6.75738	4.97536	6.86796	6.03967	17.8762	14.5627	13.1306	36.55	26.4822	24.3831	0	0.0206026	16.9343	15.6284	11.652	13.4325	17.1164	21.9991	1.95294	0.493099	0.042725	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061983 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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