TCONS_00061981 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061981
Unique NameTCONS_00061981
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1697

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061981 ID=TCONS_00061981|Name=TCONS_00061981|organism=Clytia hemisphaerica|type=transcript|length=1697bp
TATGTGGATAACCCCATATTTTAGTCTGCTGTTtctctttttcaataaaa
atcaataatataataatttgtttttgatttgcatttaGCATAAAGTATTT
AAAAACCTGGAAAATGAAATTCAGATCAAAACTTGTTGACATTGGTTGCA
TACACCAACTGACAAAGATTTTAGGGACAATTTCCAAGATCACAAAGACA
TGTACTCTGATTTTGAGCGAGCAACAAGTTGTTTTCACACAAAATGAGCG
GGCTACTGGAGGTGGAGCGTCTCTTTGGTGTGAATTAAAACAGgTTGATT
TCTTCGAAGATTATCGAATCGAGGGAAAAGATGACAACAACCAAATCTAC
CTTGAAATTATCAATGAGAATCTACTGAGAGCTTTGAAATCTGGACAGAA
TGCCCAATGCATTAAAATCAAATTGGTTAAAAAACAAACGCCATGTTTAA
TGTTTGAAGTTTCTTTGCCTTCGATGACAGCTCACACACGAGTTGTGGTT
CACGACATTCCAGTAGCAGTCATTCCAACAAGATTTTGGGAGAATTTTCA
AAGACCAATACTGCCTGCTTACGATATCAAAATTTCACTAccaaatttga
agattttaaagAATATCATTGAAAGAATGAAAAACATTTCAGGATTTATG
GTACTGTCTGCATCGCAGAACGGGAACTTATCTTGCAAAGTCGAAACTGA
GGAAGTCACCGCCACAACTTATTTCTCGAACatggaaatcgaaaaaaacg
ACAATAATATGCCTCACAGAAGCCAACGAAGATCTGTAGACATTGACGAA
GATGATGAACTCGTAGAAGCTCGTATCGATGTTCAAAAACTTGTGACGTT
TTTGAATGTGCAGCAGTTCAATGCTAATAAAGTTATGTGTGGGATTGTAA
ATGGGCAATCTGTTCATATGTTTTTACAATGTGGAGATATGTTTTTCCAG
TATTTCATACCGGCTATGAATGTTTCCATCCTGTGATTTGAACAAGgaag
aaaatttacaaatgtTGGTGAGAAGCGACTGTAGGATGTTTCGGATTTCG
CTATCTTCAAAATAGGAAATGGTCCAGTGTCCAGTGTGAAATTATCCTTT
GCTTTTAAGCATCCGGTCTTTTCGGCTCATTCGGGGCTACTTTCTTATGG
AATATTGTTTTGAGAAACACCATTACATTTATATAAACATGAGGAGAATC
ATGAAACAGTTTCAAACGCGAGTTCTTGATTGTGGATGTTTCTTGGACAC
GTTTTTCTTGAAAGGGACTGTGTCAAGTTTTTGGTCCCATTCTGGAACTA
GTGGGTTCCACTTAAGTGAAATATATTGATTCAACTCTCTTTATTCGAAT
CTCTTTTATACagatctttctgtaattcgaactaaagaaTTGACCCCTTT
CAGTTGCAAAATGGTTTGGATTAATTTCTgtgattcgaatctttctctaa
ttcgaatcagAGAGAATCAACTGTATATTGACTTTAACAAAGGTGGTCAG
TGATTGGTGATATAATTTAATATGCCTATGTATATTATGTATATTATGTA
TATAAACATTGTAGTTAATTGTTGTTATTAAAAGTCTACTTACTATTCAT
GTTCAATACTTCTTTCGATAACATGCATGTctttcagatgagatggagtt
tttataggatactttaataattggtcatttgaagcaataaaaatgac
Run BLAST on NCBI

protein sequence of TCONS_00061981-protein

>TCONS_00061981-protein ID=TCONS_00061981-protein|Name=TCONS_00061981-protein|organism=Clytia hemisphaerica|type=polypeptide|length=290bp
MKFRSKLVDIGCIHQLTKILGTISKITKTCTLILSEQQVVFTQNERATGG
GASLWCELKQVDFFEDYRIEGKDDNNQIYLEIINENLLRALKSGQNAQCI
KIKLVKKQTPCLMFEVSLPSMTAHTRVVVHDIPVAVIPTRFWENFQRPIL
PAYDIKISLPNLKILKNIIERMKNISGFMVLSASQNGNLSCKVETEEVTA
TTYFSNMEIEKNDNNMPHRSQRRSVDIDEDDELVEARIDVQKLVTFLNVQ
QFNANKVMCGIVNGQSVHMFLQCGDMFFQYFIPAMNVSIL
Run BLAST on NCBI

transcript from alignment at scaffold_361:221186..225274-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061981 ID=TCONS_00061981|Name=TCONS_00061981|organism=Clytia hemisphaerica|type=transcript|length=4089bp|location=Sequence derived from alignment at scaffold_361:221186..225274- (Clytia hemisphaerica)
TATGTGGATAACCCCATATTTTAGTCTGCTGTTTCTCTTTTTCAATAAAA
ATCAATAATATAATAATTTGTTTTTGATTTGCATTTAGCATAAAGTATTT
AAAAACCTGGAAAATGAAATTCAGATCAAAACTTGTTGACATTGGTTGCA
TACACCAACTGACAAGTAAGAGGTTTGGATGACAAACAAACCCCCCCCCC
TAGTCAAATTATAGTCTATTGGTATTCTATTTATGTTTCTTTCATTTCCT
AATGAATGGAATCAATGGCCGATTTCTATTTTGTATTACTTGATCAATAA
TTGGCGTAGCATCTGCTCTCTTCAATCCACTACGAATTTTGGTATGTGAG
CTGCTTAAAGAATGATAAATTTGAAGACTTTTCAATGTAATTNCTTAATC
CACTGCGAATTTTGGTATGTGAGCTGCTTAAAGAATGATAAATTTGAAGA
CTTTTCAATGTAATTGATATGTTCTAGTTATCAGGAACATGATAGAAAAT
TGTTTTGAGAGGTTAAGAAATGTTATGAACGTCTAAAATTTAAACCTATT
TATATTTCTCCTTTTTAAGAGATTTTAGGGACAATTTCCAAGATCACAAA
GACATGTACTCTGATTTTGAGCGAGCAACAAGTTGTTTTCACACAAAATG
AGCGGGCTACTGGAGGTGGAGCGTCTCTTTGGTGTGAATTAAAACAGGTT
TGTACTAAATCAAAATTATAGTGTAATTTACCTTCTAGATGAAATTAAAG
GTTTTGCTTCTTATTTATAAAGTACAAACAAATTAAAATGATGTAATTAT
AGGGGGCAGTTAAATTCGAATAACAGGCAGGGCATACCAAGTAAAAGATT
GTAAACATTAACAGAAGTCTAATCATTGAATTCAGAGTCACTGAATTTAA
GGAAAGACATTTACATGAAATCTTGGCTTTTTTTTTAGTTATACTGACAA
ATAAAACTGAAAATGAGTCTGTTCTCTTCTTCCAGTGTGGTCCAAAAGGA
TCTAAACACTTCCACAAAGAAGTTGAAATAATATTTTTCTTCTTAGGTTG
ATTTCTTCGAAGATTATCGAATCGAGGGAAAAGATGACAACAACCAAATC
TACCTTGAAATTATCAATGAGAATCTACTGAGAGCTTTGAAATCTGGACA
GAATGCCCAATGCATTAAAATCAAATTGGTTAAAAAACAAACGCCATGTT
TAATGTTTGAAGTTTCTTTGGTAAAGAACACGCTTATTTTCCATATTATG
AATTTCTAACCCACCCTTCGTAAAAAGTGTTCTTTTGTCCACCAGGGGTA
TTTTTGAACTAAATTACATGTTTTTTCTTTTATAAGCATTGCACTTATAA
GCATATCTAGGCTCAGATATGGGGAAAAATTAAGCATATGGCCTGCATTA
CTTGAGCCTACGAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAACATGTATAATAATTTAG
TTTAAGGTGGGAAACTTAGACGAAACTAAACTTTGGTTACTCTTTAGATA
GAAACACCAAGCAATAATTTAAACACTTTTTGGTTTGACTTCAAAATTTC
TATCAGTGTGAGATTTCAAGTCTAGATAGAGCAATGTTTCTATTGTTAAG
AATAAAAGCAAGATAATGATATTGCTTATCCTCAGTCAAAGTATGCTATT
ACGATATTCTTTGTTATTTTTTACTTCTTGGAAATGCATTGAAATACTCA
TTACAGGGTAATCAGTTAATTTTATTTCCTTCTATGTTTATTATCAGCCT
TCGATGACAGCTCACACACGAGTTGTGGTTCACGACATTCCAGTAGCAGT
CATTCCAACAAGATTTTGGGAGAATTTTCAAAGACCAATACTGCCTGCTT
ACGATGTAAGTAACATGAAGAGAATTGTTGTGTTTTGGAAATGAGAATAA
CTGATAATTTGGAGGAAGAAAGATTTGCTTGCTTACAAAACTCTTTCTTC
GGATTAAAGCAAGATTCAGATTGATTAGAATTTTTAATAAGACTAAATTT
AAGCTGATGGGTGAATCCTTGTTTAGAATAGAGTTTATAGAGGAGAGAGG
TTTTACTTAAAATTTGTTAATTTTTAATCTTCCCATCTCAGATCAAAATT
TCACTACCAAATTTGAAGATTTTAAAGAATATCATTGAAAGAATGAAAAA
CATTTCAGGATTTATGGTGAGCAACCTGCACATCAATATTTTACTTATAG
TTCATCCAAGCTTTATTGTTGAAATATACTTCTTAAAGATAGAAACCCAA
TTCTAGTTTTTAATCGACAATAAATATTTGAAATGAGTGAATTGTATATG
GTCTTTCTATCCCTTAAATGTCATTTATATTGGATAACTTTAACTAACTA
ACTAATATTTTAAGTGGCAGCTCAGCCATTATCTCCCCCAGGGGCCACTA
TAATAAATAAGTATGAATTAAATTAAGTTTTAAACAAGAACAAGAACTGG
TAACAATAAATTTCTAATTGAAAATATGCCGTTTCAGAGCTGATTCGAGA
GTAAGAATTGACTGAGTTTGTTTCAGATTGTTAGGGACATTATTCCAGGT
CGATGTGGTAGAATTTACAAACGTTTGGATTGCTTAAAGGGCATCATTTA
ACACATCTCTTGCTTTTTGTTTACACCAACACTGTTGCAGAAAAGTGAGA
ACTCTATCCACACCGCGCGAGAATGGATTTGTCAACATGCGAGGCCTGCC
TCCTTTCTATACCATAAAAAAGAATCCTTTTCGTGTTTTTAGGTACTGTC
TGCATCGCAGAACGGGAACTTATCTTGCAAAGTCGAAACTGAGGAAGTCA
CCGCCACAACTTATTTCTCGAACATGGAAATCGAAAAAAACGACAATAAT
ATGCCTCACAGAAGCCAACGAAGATCTGTAGACATTGACGAAGATGATGA
ACTCGTAGAAGCTCGTATCGATGTTCAAAAACTTGTGACGTTTTTGAATG
TGCAGCAGTTCAATGCTAATAAAGTTATGTGTGGGATTGTAAATGGGCAA
TCTGTTCATATGTTTTTACAATGTGGAGATATGTTTTTCCAGTATTTCAT
ACCGGCTATGAATGTTTCCATCCTGTGATTTGAACAAGGAAGAAAATTTA
CAAATGTTGGTGAGAAGCGACTGTAGGATGTTTCGGATTTCGCTATCTTC
AAAATAGGAAATGGTCCAGTGTCCAGTGTGAAATTATCCTTTGCTTTTAA
GCATCCGGTCTTTTCGGCTCATTCGGGGCTACTTTCTTATGGAATATTGT
TTTGAGAAACACCATTACATTTATATAAACATGAGGAGAATCATGAAACA
GTTTCAAACGCGAGTTCTTGATTGTGGATGTTTCTTGGACACGTTTTTCT
TGAAAGGGACTGTGTCAAGTTTTTGGTCCCATTCTGGAACTAGTGGGTTC
CACTTAAGTGAAATATATTGATTCAACTCTCTTTATTCGAATCTCTTTTA
TACAGATCTTTCTGTAATTCGAACTAAAGAATTGACCCCTTTCAGTTGCA
AAATGGTTTGGATTAATTTCTGTGATTCGAATCTTTCTCTAATTCGAATC
AGAGAGAATCAACTGTATATTGACTTTAACAAAGGTGGTCAGTGATTGGT
GATATAATTTAATATGCCTATGTATATTATGTATATTATGTATATAAACA
TTGTAGTTAATTGTTGTTATTAAAAGTCTACTTACTATTCATGTTCAATA
CTTCTTTCGATAACATGCATGTCTTTCAGATGAGATGGAGTTTTTATAGG
ATACTTTAATAATTGGTCATTTGAAGCAATAAAAATGAC

Coding sequence (CDS) from alignment at scaffold_361:221186..225274-

>TCONS_00061981 ID=TCONS_00061981|Name=TCONS_00061981|organism=Clytia hemisphaerica|type=CDS|length=5238bp|location=Sequence derived from alignment at scaffold_361:221186..225274- (Clytia hemisphaerica)
GTACTGTCTGCATCGCAGAACGGGAACTTATCTTGCAAAGTCGAAACTGA
GGAAGTCACCGCCACAACTTATTTCTCGAACATGGAAATCGAAAAAAACG
ACAATAATATGCCTCACAGAAGCCAACGAAGATCTGTAGACATTGACGAA
GATGATGAACTCGTAGAAGCTCGTATCGATGTTCAAAAACTTGTGACGTT
TTTGAATGTGCAGCAGTTCAATGCTAATAAAGTTATGTGTGGGATTGTAA
ATGGGCAATCTGTTCATATGTTTTTACAATGTGGAGATATGTTTTTCCAG
TATTTCATACCGGCTATGAATGTTTCCATCCTGTGAATCAAAATTTCACT
ACCAAATTTGAAGATTTTAAAGAATATCATTGAAAGAATGAAAAACATTT
CAGGATTTATGCCTTCGATGACAGCTCACACACGAGTTGTGGTTCACGAC
ATTCCAGTAGCAGTCATTCCAACAAGATTTTGGGAGAATTTTCAAAGACC
AATACTGCCTGCTTACGATGTTGATTTCTTCGAAGATTATCGAATCGAGG
GAAAAGATGACAACAACCAAATCTACCTTGAAATTATCAATGAGAATCTA
CTGAGAGCTTTGAAATCTGGACAGAATGCCCAATGCATTAAAATCAAATT
GGTTAAAAAACAAACGCCATGTTTAATGTTTGAAGTTTCTTTGAGATTTT
AGGGACAATTTCCAAGATCACAAAGACATGTACTCTGATTTTGAGCGAGC
AACAAGTTGTTTTCACACAAAATGAGCGGGCTACTGGAGGTGGAGCGTCT
CTTTGGTGTGAATTAAAACAGATGAAATTCAGATCAAAACTTGTTGACAT
TGGTTGCATACACCAACTGACAAGTACTGTCTGCATCGCAGAACGGGAAC
TTATCTTGCAAAGTCGAAACTGAGGAAGTCACCGCCACAACTTATTTCTC
GAACATGGAAATCGAAAAAAACGACAATAATATGCCTCACAGAAGCCAAC
GAAGATCTGTAGACATTGACGAAGATGATGAACTCGTAGAAGCTCGTATC
GATGTTCAAAAACTTGTGACGTTTTTGAATGTGCAGCAGTTCAATGCTAA
TAAAGTTATGTGTGGGATTGTAAATGGGCAATCTGTTCATATGTTTTTAC
AATGTGGAGATATGTTTTTCCAGTATTTCATACCGGCTATGAATGTTTCC
ATCCTGTGAATCAAAATTTCACTACCAAATTTGAAGATTTTAAAGAATAT
CATTGAAAGAATGAAAAACATTTCAGGATTTATGCCTTCGATGACAGCTC
ACACACGAGTTGTGGTTCACGACATTCCAGTAGCAGTCATTCCAACAAGA
TTTTGGGAGAATTTTCAAAGACCAATACTGCCTGCTTACGATGTTGATTT
CTTCGAAGATTATCGAATCGAGGGAAAAGATGACAACAACCAAATCTACC
TTGAAATTATCAATGAGAATCTACTGAGAGCTTTGAAATCTGGACAGAAT
GCCCAATGCATTAAAATCAAATTGGTTAAAAAACAAACGCCATGTTTAAT
GTTTGAAGTTTCTTTGAGATTTTAGGGACAATTTCCAAGATCACAAAGAC
ATGTACTCTGATTTTGAGCGAGCAACAAGTTGTTTTCACACAAAATGAGC
GGGCTACTGGAGGTGGAGCGTCTCTTTGGTGTGAATTAAAACAGATGAAA
TTCAGATCAAAACTTGTTGACATTGGTTGCATACACCAACTGACAAGTAC
TGTCTGCATCGCAGAACGGGAACTTATCTTGCAAAGTCGAAACTGAGGAA
GTCACCGCCACAACTTATTTCTCGAACATGGAAATCGAAAAAAACGACAA
TAATATGCCTCACAGAAGCCAACGAAGATCTGTAGACATTGACGAAGATG
ATGAACTCGTAGAAGCTCGTATCGATGTTCAAAAACTTGTGACGTTTTTG
AATGTGCAGCAGTTCAATGCTAATAAAGTTATGTGTGGGATTGTAAATGG
GCAATCTGTTCATATGTTTTTACAATGTGGAGATATGTTTTTCCAGTATT
TCATACCGGCTATGAATGTTTCCATCCTGTGAATCAAAATTTCACTACCA
AATTTGAAGATTTTAAAGAATATCATTGAAAGAATGAAAAACATTTCAGG
ATTTATGCCTTCGATGACAGCTCACACACGAGTTGTGGTTCACGACATTC
CAGTAGCAGTCATTCCAACAAGATTTTGGGAGAATTTTCAAAGACCAATA
CTGCCTGCTTACGATGTTGATTTCTTCGAAGATTATCGAATCGAGGGAAA
AGATGACAACAACCAAATCTACCTTGAAATTATCAATGAGAATCTACTGA
GAGCTTTGAAATCTGGACAGAATGCCCAATGCATTAAAATCAAATTGGTT
AAAAAACAAACGCCATGTTTAATGTTTGAAGTTTCTTTGAGATTTTAGGG
ACAATTTCCAAGATCACAAAGACATGTACTCTGATTTTGAGCGAGCAACA
AGTTGTTTTCACACAAAATGAGCGGGCTACTGGAGGTGGAGCGTCTCTTT
GGTGTGAATTAAAACAGATGAAATTCAGATCAAAACTTGTTGACATTGGT
TGCATACACCAACTGACAAGTACTGTCTGCATCGCAGAACGGGAACTTAT
CTTGCAAAGTCGAAACTGAGGAAGTCACCGCCACAACTTATTTCTCGAAC
ATGGAAATCGAAAAAAACGACAATAATATGCCTCACAGAAGCCAACGAAG
ATCTGTAGACATTGACGAAGATGATGAACTCGTAGAAGCTCGTATCGATG
TTCAAAAACTTGTGACGTTTTTGAATGTGCAGCAGTTCAATGCTAATAAA
GTTATGTGTGGGATTGTAAATGGGCAATCTGTTCATATGTTTTTACAATG
TGGAGATATGTTTTTCCAGTATTTCATACCGGCTATGAATGTTTCCATCC
TGTGAATCAAAATTTCACTACCAAATTTGAAGATTTTAAAGAATATCATT
GAAAGAATGAAAAACATTTCAGGATTTATGCCTTCGATGACAGCTCACAC
ACGAGTTGTGGTTCACGACATTCCAGTAGCAGTCATTCCAACAAGATTTT
GGGAGAATTTTCAAAGACCAATACTGCCTGCTTACGATGTTGATTTCTTC
GAAGATTATCGAATCGAGGGAAAAGATGACAACAACCAAATCTACCTTGA
AATTATCAATGAGAATCTACTGAGAGCTTTGAAATCTGGACAGAATGCCC
AATGCATTAAAATCAAATTGGTTAAAAAACAAACGCCATGTTTAATGTTT
GAAGTTTCTTTGAGATTTTAGGGACAATTTCCAAGATCACAAAGACATGT
ACTCTGATTTTGAGCGAGCAACAAGTTGTTTTCACACAAAATGAGCGGGC
TACTGGAGGTGGAGCGTCTCTTTGGTGTGAATTAAAACAGATGAAATTCA
GATCAAAACTTGTTGACATTGGTTGCATACACCAACTGACAAGTACTGTC
TGCATCGCAGAACGGGAACTTATCTTGCAAAGTCGAAACTGAGGAAGTCA
CCGCCACAACTTATTTCTCGAACATGGAAATCGAAAAAAACGACAATAAT
ATGCCTCACAGAAGCCAACGAAGATCTGTAGACATTGACGAAGATGATGA
ACTCGTAGAAGCTCGTATCGATGTTCAAAAACTTGTGACGTTTTTGAATG
TGCAGCAGTTCAATGCTAATAAAGTTATGTGTGGGATTGTAAATGGGCAA
TCTGTTCATATGTTTTTACAATGTGGAGATATGTTTTTCCAGTATTTCAT
ACCGGCTATGAATGTTTCCATCCTGTGAATCAAAATTTCACTACCAAATT
TGAAGATTTTAAAGAATATCATTGAAAGAATGAAAAACATTTCAGGATTT
ATGCCTTCGATGACAGCTCACACACGAGTTGTGGTTCACGACATTCCAGT
AGCAGTCATTCCAACAAGATTTTGGGAGAATTTTCAAAGACCAATACTGC
CTGCTTACGATGTTGATTTCTTCGAAGATTATCGAATCGAGGGAAAAGAT
GACAACAACCAAATCTACCTTGAAATTATCAATGAGAATCTACTGAGAGC
TTTGAAATCTGGACAGAATGCCCAATGCATTAAAATCAAATTGGTTAAAA
AACAAACGCCATGTTTAATGTTTGAAGTTTCTTTGAGATTTTAGGGACAA
TTTCCAAGATCACAAAGACATGTACTCTGATTTTGAGCGAGCAACAAGTT
GTTTTCACACAAAATGAGCGGGCTACTGGAGGTGGAGCGTCTCTTTGGTG
TGAATTAAAACAGATGAAATTCAGATCAAAACTTGTTGACATTGGTTGCA
TACACCAACTGACAAGTACTGTCTGCATCGCAGAACGGGAACTTATCTTG
CAAAGTCGAAACTGAGGAAGTCACCGCCACAACTTATTTCTCGAACATGG
AAATCGAAAAAAACGACAATAATATGCCTCACAGAAGCCAACGAAGATCT
GTAGACATTGACGAAGATGATGAACTCGTAGAAGCTCGTATCGATGTTCA
AAAACTTGTGACGTTTTTGAATGTGCAGCAGTTCAATGCTAATAAAGTTA
TGTGTGGGATTGTAAATGGGCAATCTGTTCATATGTTTTTACAATGTGGA
GATATGTTTTTCCAGTATTTCATACCGGCTATGAATGTTTCCATCCTGTG
AATCAAAATTTCACTACCAAATTTGAAGATTTTAAAGAATATCATTGAAA
GAATGAAAAACATTTCAGGATTTATGCCTTCGATGACAGCTCACACACGA
GTTGTGGTTCACGACATTCCAGTAGCAGTCATTCCAACAAGATTTTGGGA
GAATTTTCAAAGACCAATACTGCCTGCTTACGATGTTGATTTCTTCGAAG
ATTATCGAATCGAGGGAAAAGATGACAACAACCAAATCTACCTTGAAATT
ATCAATGAGAATCTACTGAGAGCTTTGAAATCTGGACAGAATGCCCAATG
CATTAAAATCAAATTGGTTAAAAAACAAACGCCATGTTTAATGTTTGAAG
TTTCTTTGAGATTTTAGGGACAATTTCCAAGATCACAAAGACATGTACTC
TGATTTTGAGCGAGCAACAAGTTGTTTTCACACAAAATGAGCGGGCTACT
GGAGGTGGAGCGTCTCTTTGGTGTGAATTAAAACAGATGAAATTCAGATC
AAAACTTGTTGACATTGGTTGCATACACCAACTGACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038852XLOC_038852Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061981-proteinTCONS_00061981-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061981-exon-scaffold_361-1575043694:225110..225274TCONS_00061981-exon-scaffold_361-1575043694:225110..225274Clytia hemisphaericaexon
TCONS_00061981-exon-scaffold_361-1575043694:224578..224705TCONS_00061981-exon-scaffold_361-1575043694:224578..224705Clytia hemisphaericaexon
TCONS_00061981-exon-scaffold_361-1575043694:224055..224228TCONS_00061981-exon-scaffold_361-1575043694:224055..224228Clytia hemisphaericaexon
TCONS_00061981-exon-scaffold_361-1575043694:223120..223227TCONS_00061981-exon-scaffold_361-1575043694:223120..223227Clytia hemisphaericaexon
TCONS_00061981-exon-scaffold_361-1575043694:222809..222883TCONS_00061981-exon-scaffold_361-1575043694:222809..222883Clytia hemisphaericaexon
TCONS_00061981-exon-scaffold_361-1575043694:221186..222232TCONS_00061981-exon-scaffold_361-1575043694:221186..222232Clytia hemisphaericaexon
TCONS_00061981-exon-scaffold_361-1510915933:225110..225274TCONS_00061981-exon-scaffold_361-1510915933:225110..225274Clytia hemisphaericaexon
TCONS_00061981-exon-scaffold_361-1510915933:224578..224705TCONS_00061981-exon-scaffold_361-1510915933:224578..224705Clytia hemisphaericaexon
TCONS_00061981-exon-scaffold_361-1510915933:224055..224228TCONS_00061981-exon-scaffold_361-1510915933:224055..224228Clytia hemisphaericaexon
TCONS_00061981-exon-scaffold_361-1510915933:223120..223227TCONS_00061981-exon-scaffold_361-1510915933:223120..223227Clytia hemisphaericaexon
TCONS_00061981-exon-scaffold_361-1510915933:222809..222883TCONS_00061981-exon-scaffold_361-1510915933:222809..222883Clytia hemisphaericaexon
TCONS_00061981-exon-scaffold_361-1510915933:221186..222232TCONS_00061981-exon-scaffold_361-1510915933:221186..222232Clytia hemisphaericaexon
TCONS_00061981-exon-scaffold_361-1491911889:225110..225274TCONS_00061981-exon-scaffold_361-1491911889:225110..225274Clytia hemisphaericaexon
TCONS_00061981-exon-scaffold_361-1491911889:224578..224705TCONS_00061981-exon-scaffold_361-1491911889:224578..224705Clytia hemisphaericaexon
TCONS_00061981-exon-scaffold_361-1491911889:224055..224228TCONS_00061981-exon-scaffold_361-1491911889:224055..224228Clytia hemisphaericaexon
TCONS_00061981-exon-scaffold_361-1491911889:223120..223227TCONS_00061981-exon-scaffold_361-1491911889:223120..223227Clytia hemisphaericaexon
TCONS_00061981-exon-scaffold_361-1491911889:222809..222883TCONS_00061981-exon-scaffold_361-1491911889:222809..222883Clytia hemisphaericaexon
TCONS_00061981-exon-scaffold_361-1491911889:221186..222232TCONS_00061981-exon-scaffold_361-1491911889:221186..222232Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:221186..225274 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
28.8018	21.8845	13.6619	13.7518	7.17013	5.20619	7.14955	6.87006	6.78431	5.95986	4.85124	6.05812	3.52189	4.69684	5.0499	3.84844	8.44295	5.7388	1.81619	2.21066	4.59783	3.53959	12.1607	10.4883	14.6425	13.4464	0.65298	1.01183	3.81073	2.40393
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR007150Hus1/Mec3
IPR016580Cell_cycle_HUS1
Vocabulary: Cellular Component
TermDefinition
GO:0030896checkpoint clamp complex
GO:0005730nucleolus
Vocabulary: Biological Process
TermDefinition
GO:0000077DNA damage checkpoint
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000077 DNA damage checkpoint
cellular_component GO:0030896 checkpoint clamp complex
cellular_component GO:0005730 nucleolus
Blast
[Close]
BLAST of TCONS_00061981 vs. Swiss-Prot (Human)
Match: HUS1 (Checkpoint protein HUS1 OS=Homo sapiens GN=HUS1 PE=1 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 2.907e-80
Identity = 126/287 (43.90%), Postives = 189/287 (65.85%), Query Frame = 3 
Query:  114 MKFRSKLVDIGCIHQLTKILGTISKITKTCTLILSEQQVVFTQNERATGGGASLWCELKQVDFFEDYRIEG-KDDNNQIYLEIINENLLRALKSGQNAQCIKIKLVKKQTPCLMFEVSLPSMTAHTRVVVHDIPVAVIPTRFWENFQRPILPAYDIKISLPNLKILKNIIERMKNISGFMVLSASQNGNLSCKVETEEVTATTYFSNMEIEKNDNNMPHRSQRRSVDIDEDDELVEARIDVQKLVTFLNVQQFNANKVMCGIVNGQSVHMFLQCGDMFFQYFIPAMN 971
            MKFR+K+VD  C++  T+I   I+K+ KTCTL +S  ++ F   ++   GG S+WCEL+Q +FF ++++EG   +NN+IYLE+ +ENL RALK+ QNA+ +KIKL  K  PCL   V L SM++ +R+V HDIP+ VIP + W++ Q P++P  D+ I LP LK +K+++E+MKNIS  +V+ A+ +G L+ K+ETE V  TT+F ++       N P  S+    D +  + + E  ID++KL+ FL  QQ N  K +C IVN + VH  L   D+  QYFIPA++
Sbjct:    1 MKFRAKIVDGACLNHFTRISNMIAKLAKTCTLRISPDKLNFILCDKLANGGVSMWCELEQENFFNEFQMEGVSAENNEIYLELTSENLSRALKTAQNARALKIKLTNKHFPCLTVSVELLSMSSSSRIVTHDIPIKVIPRKLWKDLQEPVVPDPDVSIYLPVLKTMKSVVEKMKNISNHLVIEANLDGELNLKIETELVCVTTHFKDL------GNPPLASESTHEDRNV-EHMAEVHIDIRKLLQFLAGQQVNPTKALCNIVNNKMVHFDLLHEDVSLQYFIPALS 280
The following BLAST results are available for this feature:
BLAST of TCONS_00061981 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HUS12.907e-8043.90Checkpoint protein HUS1 OS=Homo sapiens GN=HUS1 PE... [more]
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