TCONS_00061980 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061980
Unique NameTCONS_00061980
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1548

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061980 ID=TCONS_00061980|Name=TCONS_00061980|organism=Clytia hemisphaerica|type=transcript|length=1548bp
tgatttgcatttaGCATAAAGTATTTAAAAACCTGGAAAATGAAATTCAG
ATCAAAACTTGTTGACATTGGTTGCATACACCAACTGACAAAGATTTTAG
GGACAATTTCCAAGATCACAAAGACATGTACTCTGATTTTGAGCGAGCAA
CAAGTTGTTTTCACACAAAATGAGCGGGCTACTGGAGGTGGAGCGTCTCT
TTGGTGTGAATTAAAACAGgTTGATTTCTTCGAAGATTATCGAATCGAGG
GAAAAGATGACAACAACCAAATCTACCTTGAAATTATCAATGAGAATCTA
CTGAGAGCTTTGAAATCTGGACAGAATGCCCAATGCATTAAAATCAAATT
GGTTAAAAAACAAACGCCATGTTTAATGTTTGAAGTTTCTTTGCCTTCGA
TGACAGCTCACACACGAGTTGTGGTTCACGACATTCCAGTAGCAGTCATT
CCAACAAGATTTTGGGAGAATTTTCAAAGACCAATACTGCCTGCTTACGA
TGTACTGTCTGCATCGCAGAACGGGAACTTATCTTGCAAAGTCGAAACTG
AGGAAGTCACCGCCACAACTTATTTCTCGAACatggaaatcgaaaaaaac
gACAATAATATGCCTCACAGAAGCCAACGAAGATCTGTAGACATTGACGA
AGATGATGAACTCGTAGAAGCTCGTATCGATGTTCAAAAACTTGTGACGT
TTTTGAATGTGCAGCAGTTCAATGCTAATAAAGTTATGTGTGGGATTGTA
AATGGGCAATCTGTTCATATGTTTTTACAATGTGGAGATATGTTTTTCCA
GTATTTCATACCGGCTATGAATGTTTCCATCCTGTGATTTGAACAAGgaa
gaaaatttacaaatgtTGGTGAGAAGCGACTGTAGGATGTTTCGGATTTC
GCTATCTTCAAAATAGGAAATGGTCCAGTGTCCAGTGTGAAATTATCCTT
TGCTTTTAAGCATCCGGTCTTTTCGGCTCATTCGGGGCTACTTTCTTATG
GAATATTGTTTTGAGAAACACCATTACATTTATATAAACATGAGGAGAAT
CATGAAACAGTTTCAAACGCGAGTTCTTGATTGTGGATGTTTCTTGGACA
CGTTTTTCTTGAAAGGGACTGTGTCAAGTTTTTGGTCCCATTCTGGAACT
AGTGGGTTCCACTTAAGTGAAATATATTGATTCAACTCTCTTTATTCGAA
TCTCTTTTATACagatctttctgtaattcgaactaaagaaTTGACCCCTT
TCAGTTGCAAAATGGTTTGGATTAATTTCTgtgattcgaatctttctcta
attcgaatcagAGAGAATCAACTGTATATTGACTTTAACAAAGGTGGTCA
GTGATTGGTGATATAATTTAATATGCCTATGTATATTATGTATATTATGT
ATATAAACATTGTAGTTAATTGTTGTTATTAAAAGTCTACTTACTATTCA
TGTTCAATACTTCTTTCGATAACATGCATGTctttcagatgagatggagt
ttttataggatactttaataattggtcatttgaagcaataaaaatgac
Run BLAST on NCBI

transcript from alignment at scaffold_361:221186..225200-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061980 ID=TCONS_00061980|Name=TCONS_00061980|organism=Clytia hemisphaerica|type=transcript|length=4015bp|location=Sequence derived from alignment at scaffold_361:221186..225200- (Clytia hemisphaerica)
TGATTTGCATTTAGCATAAAGTATTTAAAAACCTGGAAAATGAAATTCAG
ATCAAAACTTGTTGACATTGGTTGCATACACCAACTGACAAGTAAGAGGT
TTGGATGACAAACAAACCCCCCCCCCTAGTCAAATTATAGTCTATTGGTA
TTCTATTTATGTTTCTTTCATTTCCTAATGAATGGAATCAATGGCCGATT
TCTATTTTGTATTACTTGATCAATAATTGGCGTAGCATCTGCTCTCTTCA
ATCCACTACGAATTTTGGTATGTGAGCTGCTTAAAGAATGATAAATTTGA
AGACTTTTCAATGTAATTNCTTAATCCACTGCGAATTTTGGTATGTGAGC
TGCTTAAAGAATGATAAATTTGAAGACTTTTCAATGTAATTGATATGTTC
TAGTTATCAGGAACATGATAGAAAATTGTTTTGAGAGGTTAAGAAATGTT
ATGAACGTCTAAAATTTAAACCTATTTATATTTCTCCTTTTTAAGAGATT
TTAGGGACAATTTCCAAGATCACAAAGACATGTACTCTGATTTTGAGCGA
GCAACAAGTTGTTTTCACACAAAATGAGCGGGCTACTGGAGGTGGAGCGT
CTCTTTGGTGTGAATTAAAACAGGTTTGTACTAAATCAAAATTATAGTGT
AATTTACCTTCTAGATGAAATTAAAGGTTTTGCTTCTTATTTATAAAGTA
CAAACAAATTAAAATGATGTAATTATAGGGGGCAGTTAAATTCGAATAAC
AGGCAGGGCATACCAAGTAAAAGATTGTAAACATTAACAGAAGTCTAATC
ATTGAATTCAGAGTCACTGAATTTAAGGAAAGACATTTACATGAAATCTT
GGCTTTTTTTTTAGTTATACTGACAAATAAAACTGAAAATGAGTCTGTTC
TCTTCTTCCAGTGTGGTCCAAAAGGATCTAAACACTTCCACAAAGAAGTT
GAAATAATATTTTTCTTCTTAGGTTGATTTCTTCGAAGATTATCGAATCG
AGGGAAAAGATGACAACAACCAAATCTACCTTGAAATTATCAATGAGAAT
CTACTGAGAGCTTTGAAATCTGGACAGAATGCCCAATGCATTAAAATCAA
ATTGGTTAAAAAACAAACGCCATGTTTAATGTTTGAAGTTTCTTTGGTAA
AGAACACGCTTATTTTCCATATTATGAATTTCTAACCCACCCTTCGTAAA
AAGTGTTCTTTTGTCCACCAGGGGTATTTTTGAACTAAATTACATGTTTT
TTCTTTTATAAGCATTGCACTTATAAGCATATCTAGGCTCAGATATGGGG
AAAAATTAAGCATATGGCCTGCATTACTTGAGCCTACGAAAAANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA
AAAAAAAAACATGTATAATAATTTAGTTTAAGGTGGGAAACTTAGACGAA
ACTAAACTTTGGTTACTCTTTAGATAGAAACACCAAGCAATAATTTAAAC
ACTTTTTGGTTTGACTTCAAAATTTCTATCAGTGTGAGATTTCAAGTCTA
GATAGAGCAATGTTTCTATTGTTAAGAATAAAAGCAAGATAATGATATTG
CTTATCCTCAGTCAAAGTATGCTATTACGATATTCTTTGTTATTTTTTAC
TTCTTGGAAATGCATTGAAATACTCATTACAGGGTAATCAGTTAATTTTA
TTTCCTTCTATGTTTATTATCAGCCTTCGATGACAGCTCACACACGAGTT
GTGGTTCACGACATTCCAGTAGCAGTCATTCCAACAAGATTTTGGGAGAA
TTTTCAAAGACCAATACTGCCTGCTTACGATGTAAGTAACATGAAGAGAA
TTGTTGTGTTTTGGAAATGAGAATAACTGATAATTTGGAGGAAGAAAGAT
TTGCTTGCTTACAAAACTCTTTCTTCGGATTAAAGCAAGATTCAGATTGA
TTAGAATTTTTAATAAGACTAAATTTAAGCTGATGGGTGAATCCTTGTTT
AGAATAGAGTTTATAGAGGAGAGAGGTTTTACTTAAAATTTGTTAATTTT
TAATCTTCCCATCTCAGATCAAAATTTCACTACCAAATTTGAAGATTTTA
AAGAATATCATTGAAAGAATGAAAAACATTTCAGGATTTATGGTGAGCAA
CCTGCACATCAATATTTTACTTATAGTTCATCCAAGCTTTATTGTTGAAA
TATACTTCTTAAAGATAGAAACCCAATTCTAGTTTTTAATCGACAATAAA
TATTTGAAATGAGTGAATTGTATATGGTCTTTCTATCCCTTAAATGTCAT
TTATATTGGATAACTTTAACTAACTAACTAATATTTTAAGTGGCAGCTCA
GCCATTATCTCCCCCAGGGGCCACTATAATAAATAAGTATGAATTAAATT
AAGTTTTAAACAAGAACAAGAACTGGTAACAATAAATTTCTAATTGAAAA
TATGCCGTTTCAGAGCTGATTCGAGAGTAAGAATTGACTGAGTTTGTTTC
AGATTGTTAGGGACATTATTCCAGGTCGATGTGGTAGAATTTACAAACGT
TTGGATTGCTTAAAGGGCATCATTTAACACATCTCTTGCTTTTTGTTTAC
ACCAACACTGTTGCAGAAAAGTGAGAACTCTATCCACACCGCGCGAGAAT
GGATTTGTCAACATGCGAGGCCTGCCTCCTTTCTATACCATAAAAAAGAA
TCCTTTTCGTGTTTTTAGGTACTGTCTGCATCGCAGAACGGGAACTTATC
TTGCAAAGTCGAAACTGAGGAAGTCACCGCCACAACTTATTTCTCGAACA
TGGAAATCGAAAAAAACGACAATAATATGCCTCACAGAAGCCAACGAAGA
TCTGTAGACATTGACGAAGATGATGAACTCGTAGAAGCTCGTATCGATGT
TCAAAAACTTGTGACGTTTTTGAATGTGCAGCAGTTCAATGCTAATAAAG
TTATGTGTGGGATTGTAAATGGGCAATCTGTTCATATGTTTTTACAATGT
GGAGATATGTTTTTCCAGTATTTCATACCGGCTATGAATGTTTCCATCCT
GTGATTTGAACAAGGAAGAAAATTTACAAATGTTGGTGAGAAGCGACTGT
AGGATGTTTCGGATTTCGCTATCTTCAAAATAGGAAATGGTCCAGTGTCC
AGTGTGAAATTATCCTTTGCTTTTAAGCATCCGGTCTTTTCGGCTCATTC
GGGGCTACTTTCTTATGGAATATTGTTTTGAGAAACACCATTACATTTAT
ATAAACATGAGGAGAATCATGAAACAGTTTCAAACGCGAGTTCTTGATTG
TGGATGTTTCTTGGACACGTTTTTCTTGAAAGGGACTGTGTCAAGTTTTT
GGTCCCATTCTGGAACTAGTGGGTTCCACTTAAGTGAAATATATTGATTC
AACTCTCTTTATTCGAATCTCTTTTATACAGATCTTTCTGTAATTCGAAC
TAAAGAATTGACCCCTTTCAGTTGCAAAATGGTTTGGATTAATTTCTGTG
ATTCGAATCTTTCTCTAATTCGAATCAGAGAGAATCAACTGTATATTGAC
TTTAACAAAGGTGGTCAGTGATTGGTGATATAATTTAATATGCCTATGTA
TATTATGTATATTATGTATATAAACATTGTAGTTAATTGTTGTTATTAAA
AGTCTACTTACTATTCATGTTCAATACTTCTTTCGATAACATGCATGTCT
TTCAGATGAGATGGAGTTTTTATAGGATACTTTAATAATTGGTCATTTGA
AGCAATAAAAATGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038852XLOC_038852Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061980-exon-scaffold_361-1575043694:225110..225200TCONS_00061980-exon-scaffold_361-1575043694:225110..225200Clytia hemisphaericaexon
TCONS_00061980-exon-scaffold_361-1575043694:224578..224705TCONS_00061980-exon-scaffold_361-1575043694:224578..224705Clytia hemisphaericaexon
TCONS_00061980-exon-scaffold_361-1575043694:224055..224228TCONS_00061980-exon-scaffold_361-1575043694:224055..224228Clytia hemisphaericaexon
TCONS_00061980-exon-scaffold_361-1575043694:223120..223227TCONS_00061980-exon-scaffold_361-1575043694:223120..223227Clytia hemisphaericaexon
TCONS_00061980-exon-scaffold_361-1575043694:221186..222232TCONS_00061980-exon-scaffold_361-1575043694:221186..222232Clytia hemisphaericaexon
TCONS_00061980-exon-scaffold_361-1510915933:225110..225200TCONS_00061980-exon-scaffold_361-1510915933:225110..225200Clytia hemisphaericaexon
TCONS_00061980-exon-scaffold_361-1510915933:224578..224705TCONS_00061980-exon-scaffold_361-1510915933:224578..224705Clytia hemisphaericaexon
TCONS_00061980-exon-scaffold_361-1510915933:224055..224228TCONS_00061980-exon-scaffold_361-1510915933:224055..224228Clytia hemisphaericaexon
TCONS_00061980-exon-scaffold_361-1510915933:223120..223227TCONS_00061980-exon-scaffold_361-1510915933:223120..223227Clytia hemisphaericaexon
TCONS_00061980-exon-scaffold_361-1510915933:221186..222232TCONS_00061980-exon-scaffold_361-1510915933:221186..222232Clytia hemisphaericaexon
TCONS_00061980-exon-scaffold_361-1491911889:225110..225200TCONS_00061980-exon-scaffold_361-1491911889:225110..225200Clytia hemisphaericaexon
TCONS_00061980-exon-scaffold_361-1491911889:224578..224705TCONS_00061980-exon-scaffold_361-1491911889:224578..224705Clytia hemisphaericaexon
TCONS_00061980-exon-scaffold_361-1491911889:224055..224228TCONS_00061980-exon-scaffold_361-1491911889:224055..224228Clytia hemisphaericaexon
TCONS_00061980-exon-scaffold_361-1491911889:223120..223227TCONS_00061980-exon-scaffold_361-1491911889:223120..223227Clytia hemisphaericaexon
TCONS_00061980-exon-scaffold_361-1491911889:221186..222232TCONS_00061980-exon-scaffold_361-1491911889:221186..222232Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:221186..225200 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.95976e-08	7.61534	5.87768	3.56076	0	0.595608	0.741287	1.86888	2.48576	1.7844	3.11838	1.4202	2.41231	1.14893	0	0.454018	0.304082	0.391033	0.99542	3.02535	1.52548	2.02682	0.0353589	2.84609e-09	0	0.671234	0.255291	0	0	2.24238
Blast
[Close]
BLAST of TCONS_00061980 vs. Swiss-Prot (Human)
Match: HUS1 (Checkpoint protein HUS1 OS=Homo sapiens GN=HUS1 PE=1 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 7.831e-66
Identity = 114/287 (39.72%), Postives = 170/287 (59.23%), Query Frame = 1 
Query:   40 MKFRSKLVDIGCIHQLTKILGTISKITKTCTLILSEQQVVFTQNERATGGGASLWCELKQVDFFEDYRIEG-KDDNNQIYLEIINENLLRALKSGQNAQCIKIKLVKKQTPCLMFEVSLPSMTAHTRVVVHDIPVAVIPTRFWENFQRPILPAYD-------------------------VLSASQNGNLSCKVETEEVTATTYFSNMEIEKNDNNMPHRSQRRSVDIDEDDELVEARIDVQKLVTFLNVQQFNANKVMCGIVNGQSVHMFLQCGDMFFQYFIPAMN 822
            MKFR+K+VD  C++  T+I   I+K+ KTCTL +S  ++ F   ++   GG S+WCEL+Q +FF ++++EG   +NN+IYLE+ +ENL RALK+ QNA+ +KIKL  K  PCL   V L SM++ +R+V HDIP+ VIP + W++ Q P++P  D                         V+ A+ +G L+ K+ETE V  TT+F ++       N P  S+    D +  + + E  ID++KL+ FL  QQ N  K +C IVN + VH  L   D+  QYFIPA++
Sbjct:    1 MKFRAKIVDGACLNHFTRISNMIAKLAKTCTLRISPDKLNFILCDKLANGGVSMWCELEQENFFNEFQMEGVSAENNEIYLELTSENLSRALKTAQNARALKIKLTNKHFPCLTVSVELLSMSSSSRIVTHDIPIKVIPRKLWKDLQEPVVPDPDVSIYLPVLKTMKSVVEKMKNISNHLVIEANLDGELNLKIETELVCVTTHFKDL------GNPPLASESTHEDRNV-EHMAEVHIDIRKLLQFLAGQQVNPTKALCNIVNNKMVHFDLLHEDVSLQYFIPALS 280
The following BLAST results are available for this feature:
BLAST of TCONS_00061980 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HUS17.831e-6639.72Checkpoint protein HUS1 OS=Homo sapiens GN=HUS1 PE... [more]
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