TCONS_00061970 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061970
Unique NameTCONS_00061970
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2297

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061970 ID=TCONS_00061970|Name=TCONS_00061970|organism=Clytia hemisphaerica|type=transcript|length=2297bp
ATAGTATCTGTCAGCACAACTATACTCAGTCAAGAACCATTGACACACAA
ACACTTGGTATAAATGTTGAACATGGGCATAACATCAACATGACAAGGAA
GTTGCggtgaaaagaaaacaacaaatatATAAAGAAAATAATACATCAGA
GATTATTTGGTTGAGATTGAGTCAACATGGGTCTCGTGGAAAcaTTGATT
ATTGTGTTCGGTGTTCTATGTGGCTTCTTCTTGATCCTCCTGGTCCTTAT
TTTATGGAAATATGTGAAAAACATACGAAAAAGCAAAGATGGTAAATTTT
ACAAAGGCGTGAAGACTTTCCCATCCATGGATGAAGATGATGGTGTGGAT
GTGGGACCAAGAGTGGAGTGGAATTTCGTGGCTCCACAGCTGCCAGTGGA
ACCGTATGACCCCAAGgctttggACGATCCAAAACTTACACCAAGTTCAC
GTCGTAAAGACTACTCCAAAAAACCAGTCAACCCGAAGATCAGGAaacta
aaaaagacaaaaaacatGTCCCGCTCTCTGAACTCTCTGGACGTGATCGG
TAAAAGCGAAGAGATCGATCTTGGCAGTGATCATTTGAGTATAACTACTG
ATGAGACTATGAATCGTAGTAGAAGGAGGTCTTATGGTAGTGACATCTCG
GACGTTTCTTGTACGTCAGCAAGATGTATCAAACAAGAGAAAATTAACAC
ACAAATGATGGAGAGTTTGAGGAATGGAAAACGCAAAGATTCGACGATGT
CAATTAGCCCTAAATACAATAACGGTCGACTATCGTTGGGAAATGTTGGT
CGAAACTCCACAGATGGTGGTCCAATAAAGTCTCCTCTTGCAAACGAACC
AGGTCGAATGTCTTTAGATATTGGGAGAAACTCACCTCTCGTGAAAAAAA
AGTGGATCTCATTAGACGATGCACCGATGAGCGCCGATAACCTTTCAGAA
TATGGTTCAGATTTTGGTGGATCTTCCATAGCACTGGATGAGTCTAAATC
AGGATCCTCAAATATCAGGAGACGTTTCGCTCAAACCAGAAACAGTAATC
GAAGCTTCGAATATAAAATTGTCGGGAATTTAATCGTATCGGTGGAATAT
AAAGAATCAGATAATAAACTTACTTTATGGATTCATCGTGCGTCCGGCTT
AGGTGGTGACCGTAGGGAAGATCCGGAAATCAGTTCGTTTGTCCGGATGT
ACCTGATACCGGGcaagaaacaaaaacaagagAGTTCAGTAATACGCGGT
GCGAAAGATCCACATTATGAAGAAACTTTTACTTTTAATAACATTATACC
GAGTGAACTGTCAGCACAGAAATTACGATTTAAAGTGTATAATTCACCTT
CATTCAGCGTCAAAAACGAGCTGTTAGGAGaagcaaatatttttttgagc
aCTTTGAAAAGCGATGATAAAGAAGTTTTCCATTTGGATTTACTGAAGNG
ggagaaggaaatatttttttgagcaCTTTGAAAAGCGATGATAAAGAAGT
TTTCCATTTGGATTTACTGAAGAAAAAGTCGAAGATTTCTTCAGCTTCCG
TAGAAATCAGTCTTTGTCACCAAGGAACATACTCCAAACTGGAAGTCATC
ATCCACCAAGCAAAAAATCTAGTGCGAAAATCAAACGCTATGATCAatcC
ATACGCCAAGGTCTCGTTTTACAAAGACGGCTCCGTGGAAACAAAAGAAA
CTACACATCAGACAAACGAACGAAATCCCATATTCAATGAATCGCTCGAT
TTCAACGCCAACACAGACGTAGGATCACCATTGACTACGTATTCTTTAGT
CGTTACCATAATGCATCACTCCATATTACGGAAAGACAGTCCCATTGGTC
ACGTGATATTTACGTTGAACTCACCGCAAGAAACAGcggaaaaacatttc
aaaatggcggaaaaTGACCCGCATCGTCGGATCACAGAATGGCACAAGCT
AATAGATCCGGATGATGTGTGAAAACGATTTTGGAATTTGGTTAaccatt
tttatcatgtttcTCGGGATGAAAATTATCTCAaattcaagaaatgaaaa
aataagtttggatagaattctttaaatttCTTACCGGCAACTTACCAATA
AAATATCGTCTAGTGGGTTGTACAGCATGGTAGAGTCTCATTTTTTTTCC
AGTTGTTATATTTCCTCATGATTGGTTAGTATGTAATTATTGTTTGTATT
CAATTGTTAATTAATctatctgaaaaataaaatcaattttggatTCAAAT
GTGAATAGTCTTATGAGGTAAAAAGATACAAAAGATTATAATTAATA
Run BLAST on NCBI

protein sequence of TCONS_00061970-protein

>TCONS_00061970-protein ID=TCONS_00061970-protein|Name=TCONS_00061970-protein|organism=Clytia hemisphaerica|type=polypeptide|length=431bp
MGLVETLIIVFGVLCGFFLILLVLILWKYVKNIRKSKDGKFYKGVKTFPS
MDEDDGVDVGPRVEWNFVAPQLPVEPYDPKALDDPKLTPSSRRKDYSKKP
VNPKIRKLKKTKNMSRSLNSLDVIGKSEEIDLGSDHLSITTDETMNRSRR
RSYGSDISDVSCTSARCIKQEKINTQMMESLRNGKRKDSTMSISPKYNNG
RLSLGNVGRNSTDGGPIKSPLANEPGRMSLDIGRNSPLVKKKWISLDDAP
MSADNLSEYGSDFGGSSIALDESKSGSSNIRRRFAQTRNSNRSFEYKIVG
NLIVSVEYKESDNKLTLWIHRASGLGGDRREDPEISSFVRMYLIPGKKQK
QESSVIRGAKDPHYEETFTFNNIIPSELSAQKLRFKVYNSPSFSVKNELL
GEANIFLSTLKSDDKEVFHLDLLKXEKEIFF
Run BLAST on NCBI

transcript from alignment at scaffold_361:136908..142672-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061970 ID=TCONS_00061970|Name=TCONS_00061970|organism=Clytia hemisphaerica|type=transcript|length=5765bp|location=Sequence derived from alignment at scaffold_361:136908..142672- (Clytia hemisphaerica)
ATAGTATCTGTCAGCACAACTATACTCAGTCAAGAACCATTGACACACAA
ACACTTGGTATAAATGTTGAAGCAGAGTTAGTTAGTTGAATATGTTTTTA
CAGAAAAATGAAAACTCAGATTTCATAACAGAAGAAGAATTGACACAGTG
AATTTGTTGACTCAGCTACAACAACTTGTGGAGGTCTATAAAGTCAATAA
AAAAATATCAATTCTAGCTCAGATAGCACAAAAGCTGACATTTTGAGCAG
GAGCTGGTTAACATATCGTTCCACAATAAGCATAAGATAACAGGAAGAGT
GCTTAATCTAATCTCAGTCCAGGAATATATATTGACGCCTTGTTTTTAAG
CATGGGCATAACATCAACATGACAAGGAAGTTGCGGTGAAAAGAAAACAA
CAAATATATAAAGAAAATAATACATCAGAGATTATTTGGTTGAGATTGAG
TCAACATGGGTCTCGTGGAAAGTAAGTACCATTTTAATTCCTTCCAAAAA
AGTTATATGCTTGCCGATCAGCAAAATATGTACGCAAGTTACTAAAACTT
ACAACCCCAGTATTCACTTCCAACAAATTAAGTAACAAGCTCATTACTGT
ATTATATTTTTATTGTCTGGGTATAGTAATAAGCTAAAGTTTGAATTTTT
TGGAATAAAGGGGATAATTTAAAGCCTTCATGGCCAAAATTTGAAATTCA
AACTGCTTTGTTGGCCCTTTTGCCAAGACTGATTCTACTTAGCGTTTGAG
TTATGGAGACTCGGCTGTCCTGGTTTTGTTTCCGTATCATATTTAAGAGT
GATAACCGCTTGGTTTATTTCAGTTTTTTTTTAATTTCAGCATTGATTAT
TGTGTTCGGTGTTCTATGTGGCTTCTTCTTGATCCTCCTGGTCCTTATTT
TATGGAAATATGTGAAAAACATACGAAAAAGCAAAGATGGTAAATTTTAC
AAAGGCGTGAAGACTTTCCCATCCATGGATGAAGATGATGGTGTGGATGT
GGGACCAAGAGTGGAGTGGAATTTCGTGGCTCCACAGCTGCCAGTGGAAC
CGTATGACCCCAAGGTGAGAAATCATTATCATGTTATTGAATGAGTAGTA
ACCTATATAGTTCGATCCCTTACTGTTTGCTTCAAGTGGCTTACCAGGAC
TTTCTTAAATTGTCATAATTATCTCCTAAAACAACAGTTTATTGATATTG
AGCGAAAAAAGAAGTTACAGATTGGAAATCTATAGAGGCGATCCCTTACG
CAAATCGAACGGTTGCTTCCATAATGGCGGAATTTGCGTAACTTAACAAA
GCATGCCTCTAAACTGCATCTTTTTTAGGCTTTGGACGATCCAAAACTTA
CACCAAGTTCACGTCGTAAAGACTACTCCAAAAAACCAGTCAACCCGAAG
ATCAGGAAACTAAAAAAGACAAAAAACATGTCCCGCTCTCTGAACTCTCT
GGACGTGATCGGTAAAAGCGAAGAGATCGATCTTGGCAGTGATCATTTGA
GTATAACTACTGATGAGACTATGAATCGTAGTAGAAGGAGGTCTTATGGT
AGTGACATCTCGGACGTTTCTTGTACGTCAGCAAGATGTATCAAACAAGA
GAAAATTAACACACAAATGATGGAGAGTTTGAGGAATGGAAAACGCAAAG
GTGAGTTTTGAATGTTGTTTTAATGTTCATTTAACGTCATTTGGATGTCC
ACAATGTGTCCGTAAAAAAAGCAGAACAGAATTTATATAAATAAAAATCC
TGGTCATTTTTGTGGCTTTTTTTCAATGTCACGATCAACGCTTACCTGGT
TTTCCAAATATTGGGAGCGTACGTGATATTGGTACATCGGTATTGGTCTT
TTTTTAGATCTGTAAATCGGTATTACGGAAAACAATAAATCAATATTTCA
AGAGCATCTCGGTATCGGTAAAAGACTCATTTTTATATCGGTATTTCGGT
ATTTTCGGTCTACTATCGGTATCAAAGATCATGTGAAATCAAAAAATCAT
GTTTCATCATTGAAATTTTTAAGAGATACAAGGGAAAGGGAGTCTAGAAA
ATCTGCATATGAATGTTGATACAAAATATTGAAATCAATCGGTATCGGCA
TTTGGGCGAAAAAGTTATCGGTATATCGGTAATCGGGGTAAAAAGTGCCG
TTGTGCCATAAGTGATCGGTATAATGAAGTGCCGTACGCCCCCACTATAT
TGATTGCTATGGCATTTGATTCATAGAGGAGTCCATATAAAAGTAACACG
TTATGGGATTTAATTACCTTGGGAATGGTTTCAAACCGAGGTAGTTGTTG
TACTTAAAATAATATTACCTTGAGAATTGAATATCTATTGCTAGAACACA
GAAATTCCATCTTATCTCAATATTTTGAACACCAATGAGATAATAATGAG
TTTTAAGGATTTCAATTAATCTGTCCCGCTTTTTCCGGACACACTGTAAG
GTAGCTAATAGAACTCCCCCTAAGCAAAGGAGGGAAATAAAAGGAAGCTC
CCAAAAACGCCCTTCCTACTTGCCAAAGAATCCGATAAATTGTACTTAAG
TCATCATCACTGCCAATTGAAACTAAAGATGGTGGGTTAGGAGTGCAATT
AAGCGATTAAATAAAACAAAGTTTCATTGAACAACATAAATCGTAATTTG
TAATATGTCGTTCTTTGATAGTTAGGGTTAGGGTTAGAGATTGTCGTTCT
CTTTGTCGCTTTTTAATAGTTATTTGTCCTTCTTTTTAGATGGTCTGGAA
ACACGTTACATGAACAGGCTCTTAATATCCGCTCTGACAAATTAATGAGG
GAATTACTATCATCTTTAAAAGACAGTTAACATCCTTTAATGATTCTAGT
TTCCAGACTTCCTGGGGTTTCGTTTAGCTCATTGACTTCCAAGCCTGAAG
CGCTAGAGACGAGACTCCTGGATGGGAAATGAACCCACTTATTTCCCATC
TAGAACACCCGCGCATAGTTTTTACACAAACGTCGGATTAAAACTAAAAT
CTATTGCTATATTTCAAAAAATGTAGTCCTCCAAAACAAAGGAACCGGTA
GATACAATCCATTGTCTTGATTACGGCGCGTTTTGGATGGGAAATAAGTA
GCTTCAATTTCTCTTGCCTGAGAAGAGTTAAAGTTTCGCCTCTAACCCTT
AGCGCTTTACACTTCTGAAACCCTTCCCACCCTCCGTACAAAGATGCGAT
GATTTCTTTTTGTGATTATGATGAGAACAAAACGTATTTGAAGGCAATAC
AAGGGGAGAATACTTGATAGGCCAAGATTTATTTGGACACTTTCAATAAA
AATAATCCTTATTTTGTTTCCTTATTAGATTCGACGATGTCAATTAGCCC
TAAATACAATAACGGTCGACTATCGTTGGGAAATGTTGGTCGAAACTCCA
CAGATGGTGGTCCAATAAAGTCTCCTCTTGCAAACGAACCAGGTCGAATG
TCTTTAGATATTGGGAGAAACTCACCTCTCGTGAAAAAAAAGTGGATCTC
ATTAGACGATGCACCGATGAGCGCCGATAACCTTTCAGAATATGGTTCAG
ATTTTGGTGGATCTTCCATAGCACTGGATGAGTCTAAATCAGGATCCTCA
AATATCAGGAGACGTTTCGCTCAAACCAGAAACAGTAATCGAAGCTTCGA
ATATAAAATTGTCGGGAATTTAATCGTATCGGTGGAATATAAAGAATCAG
ATAATAAACTTACTTTATGGATTCATCGTGCGTCCGGCTTAGGTGGTGAC
CGTAGGGAAGATCCGGAAATCAGTTCGTTTGTCCGGATGTACCTGATACC
GGGCAAGAAACAAAAACAAGAGAGTTCAGTAATACGCGGTGCGAAAGATC
CACATTATGAAGAAACTTTTACTTTTAATAACATTATACCGAGTGAACTG
TCAGCACAGAAATTACGATTTAAAGTGTATAATTCACCTTCATTCAGCGT
CAAAAACGAGCTGTTAGGAGAAGCAAATATTTTTTTGAGCACTTTGAAAA
GCGATGATAAAGAAGTTTTCCATTTGGATTTACTGAAGNGGGAGAAGGAA
ATATTTTTTTGAGCACTTTGAAAAGCGATGATAAAGAAGTTTTCCATTTG
GATTTACTGAAGAAAAAGTCGAAGGTAGGCTCATATTTGAATAAATGAAA
ACAGCCGATAGACAGTCTTAAAGTCCTGGATCACGAGGCTATTAACGTTT
AATATCCACTCTACCTAATTACTAAGTCCTCACTCTGTCTCACTTAACAT
GATGTCAATAAATACCTATCGATATTTTGTTGAAGTTTAAAGGGAGATTT
TTCAATTCAAACGATACATCAACTTCGTTTGTAAGATGTTTCTCATTGAC
TTTATCATAATAGATCATAGCGTAAACATTGGTTGAGGGCCAGCGTGGGA
AAAATTAAACATGGTGCAAAAACAATAAATGGGCGGAGGCATGTTATGGG
GTTGTTGTCACATAAACTTTTAACATAGAACATATGTTACTTTTCCCAAT
TTCTCAAAAATGTTCAAACACAAATTTGTGCGGGATAAGGAAATTTCGAT
TAATGGTGTTAAGGTTTATAAGATGTTGCTAACTAAAGGGGTCATAAAAC
TTATTCGAGATAAGGAGACATTCGAGTTAAAGGGACTCCACTATATAGGC
AAACATACATAAATACCTTTTACCAACTCTCTATCTTCTCGTTTGCAGAT
TTCTTCAGCTTCCGTAGAAATCAGTCTTTGTCACCAAGGAACATACTCCA
AACTGGAAGTCATCATCCACCAAGCAAAAAATCTAGTGCGAAAATCAAAC
GCTATGATCAGTAAGTTAAAGGGAACAAATTTTAGACTTAGCTTTCTCAC
TTTCAATTATAAGCTTTTTATTTTTTAACCAATAACTGGTTAGGCTGCTG
GCATCCACTAACGGATTCGTGCTCCTTATTTTGTAGAGGTCTGGGATTCA
GACTAATAACTGGATAGCCTTTCTCTCCAAAAATCGGTAATTCGAATAGA
ATCAAAGCCTCTGCCAGGAGAAATCATCCTTCAAGACAGATCGTCTTTGA
AAGACAAAACTTCCTCATCTTATTGGTGGTTCGGAGGGTTTCTATGTCAT
TTTTTCTTTAACAGATCCATACGCCAAGGTCTCGTTTTACAAAGACGGCT
CCGTGGAAACAAAAGAAACTACACATCAGACAAACGAACGAAATCCCATA
TTCAATGAATCGCTCGATTTCAACGCCAACACAGACGTAGGATCACCATT
GACTACGTATTCTTTAGTCGTTACCATAATGCATCACTCCATATTACGGA
AAGACAGTCCCATTGGTCACGTGATATTTACGTTGAACTCACCGCAAGAA
ACAGCGGAAAAACATTTCAAAATGGCGGAAAATGACCCGCATCGTCGGAT
CACAGAATGGCACAAGCTAATAGATCCGGATGATGTGTGAAAACGATTTT
GGAATTTGGTTAACCATTTTTATCATGTTTCTCGGGATGAAAATTATCTC
AAATTCAAGAAATGAAAAAATAAGTTTGGATAGAATTCTTTAAATTTCTT
ACCGGCAACTTACCAATAAAATATCGTCTAGTGGGTTGTACAGCATGGTA
GAGTCTCATTTTTTTTCCAGTTGTTATATTTCCTCATGATTGGTTAGTAT
GTAATTATTGTTTGTATTCAATTGTTAATTAATCTATCTGAAAAATAAAA
TCAATTTTGGATTCAAATGTGAATAGTCTTATGAGGTAAAAAGATACAAA
AGATTATAATTAATA

Coding sequence (CDS) from alignment at scaffold_361:136908..142672-

>TCONS_00061970 ID=TCONS_00061970|Name=TCONS_00061970|organism=Clytia hemisphaerica|type=CDS|length=5184bp|location=Sequence derived from alignment at scaffold_361:136908..142672- (Clytia hemisphaerica)
ATTCGACGATGTCAATTAGCCCTAAATACAATAACGGTCGACTATCGTTG
GGAAATGTTGGTCGAAACTCCACAGATGGTGGTCCAATAAAGTCTCCTCT
TGCAAACGAACCAGGTCGAATGTCTTTAGATATTGGGAGAAACTCACCTC
TCGTGAAAAAAAAGTGGATCTCATTAGACGATGCACCGATGAGCGCCGAT
AACCTTTCAGAATATGGTTCAGATTTTGGTGGATCTTCCATAGCACTGGA
TGAGTCTAAATCAGGATCCTCAAATATCAGGAGACGTTTCGCTCAAACCA
GAAACAGTAATCGAAGCTTCGAATATAAAATTGTCGGGAATTTAATCGTA
TCGGTGGAATATAAAGAATCAGATAATAAACTTACTTTATGGATTCATCG
TGCGTCCGGCTTAGGTGGTGACCGTAGGGAAGATCCGGAAATCAGTTCGT
TTGTCCGGATGTACCTGATACCGGGCAAGAAACAAAAACAAGAGAGTTCA
GTAATACGCGGTGCGAAAGATCCACATTATGAAGAAACTTTTACTTTTAA
TAACATTATACCGAGTGAACTGTCAGCACAGAAATTACGATTTAAAGTGT
ATAATTCACCTTCATTCAGCGTCAAAAACGAGCTGTTAGGAGAAGCAAAT
ATTTTTTTGAGCACTTTGAAAAGCGATGATAAAGAAGTTTTCCATTTGGA
TTTACTGAAGNGGGAGAAGGAAATATTTTTTTGAGCTTTGGACGATCCAA
AACTTACACCAAGTTCACGTCGTAAAGACTACTCCAAAAAACCAGTCAAC
CCGAAGATCAGGAAACTAAAAAAGACAAAAAACATGTCCCGCTCTCTGAA
CTCTCTGGACGTGATCGGTAAAAGCGAAGAGATCGATCTTGGCAGTGATC
ATTTGAGTATAACTACTGATGAGACTATGAATCGTAGTAGAAGGAGGTCT
TATGGTAGTGACATCTCGGACGTTTCTTGTACGTCAGCAAGATGTATCAA
ACAAGAGAAAATTAACACACAAATGATGGAGAGTTTGAGGAATGGAAAAC
GCAAAGCATTGATTATTGTGTTCGGTGTTCTATGTGGCTTCTTCTTGATC
CTCCTGGTCCTTATTTTATGGAAATATGTGAAAAACATACGAAAAAGCAA
AGATGGTAAATTTTACAAAGGCGTGAAGACTTTCCCATCCATGGATGAAG
ATGATGGTGTGGATGTGGGACCAAGAGTGGAGTGGAATTTCGTGGCTCCA
CAGCTGCCAGTGGAACCGTATGACCCCAAGATGGGTCTCGTGGAAAATTC
GACGATGTCAATTAGCCCTAAATACAATAACGGTCGACTATCGTTGGGAA
ATGTTGGTCGAAACTCCACAGATGGTGGTCCAATAAAGTCTCCTCTTGCA
AACGAACCAGGTCGAATGTCTTTAGATATTGGGAGAAACTCACCTCTCGT
GAAAAAAAAGTGGATCTCATTAGACGATGCACCGATGAGCGCCGATAACC
TTTCAGAATATGGTTCAGATTTTGGTGGATCTTCCATAGCACTGGATGAG
TCTAAATCAGGATCCTCAAATATCAGGAGACGTTTCGCTCAAACCAGAAA
CAGTAATCGAAGCTTCGAATATAAAATTGTCGGGAATTTAATCGTATCGG
TGGAATATAAAGAATCAGATAATAAACTTACTTTATGGATTCATCGTGCG
TCCGGCTTAGGTGGTGACCGTAGGGAAGATCCGGAAATCAGTTCGTTTGT
CCGGATGTACCTGATACCGGGCAAGAAACAAAAACAAGAGAGTTCAGTAA
TACGCGGTGCGAAAGATCCACATTATGAAGAAACTTTTACTTTTAATAAC
ATTATACCGAGTGAACTGTCAGCACAGAAATTACGATTTAAAGTGTATAA
TTCACCTTCATTCAGCGTCAAAAACGAGCTGTTAGGAGAAGCAAATATTT
TTTTGAGCACTTTGAAAAGCGATGATAAAGAAGTTTTCCATTTGGATTTA
CTGAAGNGGGAGAAGGAAATATTTTTTTGAGCTTTGGACGATCCAAAACT
TACACCAAGTTCACGTCGTAAAGACTACTCCAAAAAACCAGTCAACCCGA
AGATCAGGAAACTAAAAAAGACAAAAAACATGTCCCGCTCTCTGAACTCT
CTGGACGTGATCGGTAAAAGCGAAGAGATCGATCTTGGCAGTGATCATTT
GAGTATAACTACTGATGAGACTATGAATCGTAGTAGAAGGAGGTCTTATG
GTAGTGACATCTCGGACGTTTCTTGTACGTCAGCAAGATGTATCAAACAA
GAGAAAATTAACACACAAATGATGGAGAGTTTGAGGAATGGAAAACGCAA
AGCATTGATTATTGTGTTCGGTGTTCTATGTGGCTTCTTCTTGATCCTCC
TGGTCCTTATTTTATGGAAATATGTGAAAAACATACGAAAAAGCAAAGAT
GGTAAATTTTACAAAGGCGTGAAGACTTTCCCATCCATGGATGAAGATGA
TGGTGTGGATGTGGGACCAAGAGTGGAGTGGAATTTCGTGGCTCCACAGC
TGCCAGTGGAACCGTATGACCCCAAGATGGGTCTCGTGGAAAATTCGACG
ATGTCAATTAGCCCTAAATACAATAACGGTCGACTATCGTTGGGAAATGT
TGGTCGAAACTCCACAGATGGTGGTCCAATAAAGTCTCCTCTTGCAAACG
AACCAGGTCGAATGTCTTTAGATATTGGGAGAAACTCACCTCTCGTGAAA
AAAAAGTGGATCTCATTAGACGATGCACCGATGAGCGCCGATAACCTTTC
AGAATATGGTTCAGATTTTGGTGGATCTTCCATAGCACTGGATGAGTCTA
AATCAGGATCCTCAAATATCAGGAGACGTTTCGCTCAAACCAGAAACAGT
AATCGAAGCTTCGAATATAAAATTGTCGGGAATTTAATCGTATCGGTGGA
ATATAAAGAATCAGATAATAAACTTACTTTATGGATTCATCGTGCGTCCG
GCTTAGGTGGTGACCGTAGGGAAGATCCGGAAATCAGTTCGTTTGTCCGG
ATGTACCTGATACCGGGCAAGAAACAAAAACAAGAGAGTTCAGTAATACG
CGGTGCGAAAGATCCACATTATGAAGAAACTTTTACTTTTAATAACATTA
TACCGAGTGAACTGTCAGCACAGAAATTACGATTTAAAGTGTATAATTCA
CCTTCATTCAGCGTCAAAAACGAGCTGTTAGGAGAAGCAAATATTTTTTT
GAGCACTTTGAAAAGCGATGATAAAGAAGTTTTCCATTTGGATTTACTGA
AGNGGGAGAAGGAAATATTTTTTTGAGCTTTGGACGATCCAAAACTTACA
CCAAGTTCACGTCGTAAAGACTACTCCAAAAAACCAGTCAACCCGAAGAT
CAGGAAACTAAAAAAGACAAAAAACATGTCCCGCTCTCTGAACTCTCTGG
ACGTGATCGGTAAAAGCGAAGAGATCGATCTTGGCAGTGATCATTTGAGT
ATAACTACTGATGAGACTATGAATCGTAGTAGAAGGAGGTCTTATGGTAG
TGACATCTCGGACGTTTCTTGTACGTCAGCAAGATGTATCAAACAAGAGA
AAATTAACACACAAATGATGGAGAGTTTGAGGAATGGAAAACGCAAAGCA
TTGATTATTGTGTTCGGTGTTCTATGTGGCTTCTTCTTGATCCTCCTGGT
CCTTATTTTATGGAAATATGTGAAAAACATACGAAAAAGCAAAGATGGTA
AATTTTACAAAGGCGTGAAGACTTTCCCATCCATGGATGAAGATGATGGT
GTGGATGTGGGACCAAGAGTGGAGTGGAATTTCGTGGCTCCACAGCTGCC
AGTGGAACCGTATGACCCCAAGATGGGTCTCGTGGAAAATTCGACGATGT
CAATTAGCCCTAAATACAATAACGGTCGACTATCGTTGGGAAATGTTGGT
CGAAACTCCACAGATGGTGGTCCAATAAAGTCTCCTCTTGCAAACGAACC
AGGTCGAATGTCTTTAGATATTGGGAGAAACTCACCTCTCGTGAAAAAAA
AGTGGATCTCATTAGACGATGCACCGATGAGCGCCGATAACCTTTCAGAA
TATGGTTCAGATTTTGGTGGATCTTCCATAGCACTGGATGAGTCTAAATC
AGGATCCTCAAATATCAGGAGACGTTTCGCTCAAACCAGAAACAGTAATC
GAAGCTTCGAATATAAAATTGTCGGGAATTTAATCGTATCGGTGGAATAT
AAAGAATCAGATAATAAACTTACTTTATGGATTCATCGTGCGTCCGGCTT
AGGTGGTGACCGTAGGGAAGATCCGGAAATCAGTTCGTTTGTCCGGATGT
ACCTGATACCGGGCAAGAAACAAAAACAAGAGAGTTCAGTAATACGCGGT
GCGAAAGATCCACATTATGAAGAAACTTTTACTTTTAATAACATTATACC
GAGTGAACTGTCAGCACAGAAATTACGATTTAAAGTGTATAATTCACCTT
CATTCAGCGTCAAAAACGAGCTGTTAGGAGAAGCAAATATTTTTTTGAGC
ACTTTGAAAAGCGATGATAAAGAAGTTTTCCATTTGGATTTACTGAAGNG
GGAGAAGGAAATATTTTTTTGAGCTTTGGACGATCCAAAACTTACACCAA
GTTCACGTCGTAAAGACTACTCCAAAAAACCAGTCAACCCGAAGATCAGG
AAACTAAAAAAGACAAAAAACATGTCCCGCTCTCTGAACTCTCTGGACGT
GATCGGTAAAAGCGAAGAGATCGATCTTGGCAGTGATCATTTGAGTATAA
CTACTGATGAGACTATGAATCGTAGTAGAAGGAGGTCTTATGGTAGTGAC
ATCTCGGACGTTTCTTGTACGTCAGCAAGATGTATCAAACAAGAGAAAAT
TAACACACAAATGATGGAGAGTTTGAGGAATGGAAAACGCAAAGCATTGA
TTATTGTGTTCGGTGTTCTATGTGGCTTCTTCTTGATCCTCCTGGTCCTT
ATTTTATGGAAATATGTGAAAAACATACGAAAAAGCAAAGATGGTAAATT
TTACAAAGGCGTGAAGACTTTCCCATCCATGGATGAAGATGATGGTGTGG
ATGTGGGACCAAGAGTGGAGTGGAATTTCGTGGCTCCACAGCTGCCAGTG
GAACCGTATGACCCCAAGATGGGTCTCGTGGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038850XLOC_038850Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061970-exon-scaffold_361-1575043694:142602..142672TCONS_00061970-exon-scaffold_361-1575043694:142602..142672Clytia hemisphaericaexon
TCONS_00061970-exon-scaffold_361-1575043694:142202..142322TCONS_00061970-exon-scaffold_361-1575043694:142202..142322Clytia hemisphaericaexon
TCONS_00061970-exon-scaffold_361-1575043694:141609..141832TCONS_00061970-exon-scaffold_361-1575043694:141609..141832Clytia hemisphaericaexon
TCONS_00061970-exon-scaffold_361-1575043694:141023..141344TCONS_00061970-exon-scaffold_361-1575043694:141023..141344Clytia hemisphaericaexon
TCONS_00061970-exon-scaffold_361-1575043694:138549..139344TCONS_00061970-exon-scaffold_361-1575043694:138549..139344Clytia hemisphaericaexon
TCONS_00061970-exon-scaffold_361-1575043694:137863..137974TCONS_00061970-exon-scaffold_361-1575043694:137863..137974Clytia hemisphaericaexon
TCONS_00061970-exon-scaffold_361-1575043694:136908..137558TCONS_00061970-exon-scaffold_361-1575043694:136908..137558Clytia hemisphaericaexon
TCONS_00061970-exon-scaffold_361-1510915933:142602..142672TCONS_00061970-exon-scaffold_361-1510915933:142602..142672Clytia hemisphaericaexon
TCONS_00061970-exon-scaffold_361-1510915933:142202..142322TCONS_00061970-exon-scaffold_361-1510915933:142202..142322Clytia hemisphaericaexon
TCONS_00061970-exon-scaffold_361-1510915933:141609..141832TCONS_00061970-exon-scaffold_361-1510915933:141609..141832Clytia hemisphaericaexon
TCONS_00061970-exon-scaffold_361-1510915933:141023..141344TCONS_00061970-exon-scaffold_361-1510915933:141023..141344Clytia hemisphaericaexon
TCONS_00061970-exon-scaffold_361-1510915933:138549..139344TCONS_00061970-exon-scaffold_361-1510915933:138549..139344Clytia hemisphaericaexon
TCONS_00061970-exon-scaffold_361-1510915933:137863..137974TCONS_00061970-exon-scaffold_361-1510915933:137863..137974Clytia hemisphaericaexon
TCONS_00061970-exon-scaffold_361-1510915933:136908..137558TCONS_00061970-exon-scaffold_361-1510915933:136908..137558Clytia hemisphaericaexon
TCONS_00061970-exon-scaffold_361-1491911889:142602..142672TCONS_00061970-exon-scaffold_361-1491911889:142602..142672Clytia hemisphaericaexon
TCONS_00061970-exon-scaffold_361-1491911889:142202..142322TCONS_00061970-exon-scaffold_361-1491911889:142202..142322Clytia hemisphaericaexon
TCONS_00061970-exon-scaffold_361-1491911889:141609..141832TCONS_00061970-exon-scaffold_361-1491911889:141609..141832Clytia hemisphaericaexon
TCONS_00061970-exon-scaffold_361-1491911889:141023..141344TCONS_00061970-exon-scaffold_361-1491911889:141023..141344Clytia hemisphaericaexon
TCONS_00061970-exon-scaffold_361-1491911889:138549..139344TCONS_00061970-exon-scaffold_361-1491911889:138549..139344Clytia hemisphaericaexon
TCONS_00061970-exon-scaffold_361-1491911889:137863..137974TCONS_00061970-exon-scaffold_361-1491911889:137863..137974Clytia hemisphaericaexon
TCONS_00061970-exon-scaffold_361-1491911889:136908..137558TCONS_00061970-exon-scaffold_361-1491911889:136908..137558Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061970-proteinTCONS_00061970-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:136908..142672 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.152921	0.0994149	0.0192384	0.145031	2.07839	1.56462	11.0547	11.9588	19.7277	24.6475	5.17034	18.6784	13.9682	11.361	4.84789	5.39677	2.77008	3.69136	14.033	16.6624	0.884193	0.86821	1.65823	1.51485	4.09388	5.72419	1.35673	0.795669	0.447061	0.474699
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000008C2_dom
Blast
[Close]
BLAST of TCONS_00061970 vs. Swiss-Prot (Human)
Match: SYT4 (Synaptotagmin-4 OS=Homo sapiens GN=SYT4 PE=1 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 5.711e-17
Identity = 36/127 (28.35%), Postives = 68/127 (53.54%), Query Frame = 3 
Query: 1071 VGNLIVSVEYKESDNKLTLWIHRASGLGGDRREDPEISSFVRMYLIPGKKQKQESSVIRGAKDPHYEETFTFNNIIPSELSAQKLRFKVYNSPSFSVKNELLGEANIFLSTLK-SDDKEVFHLDLLK 1448
            +G L  S+EY        + I  A GL     +      +++M ++P KK K ++ V+R   DP ++ETFTF  I  +++    L F + +   FS +++++GE  I LS ++ S+ K + + +++K
Sbjct:  154 LGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFS-RDDIIGEVLIPLSGIELSEGKMLMNREIIK 279

HSP 2 Score: 49.2914 bits (116), Expect = 5.711e-17
Identity = 35/133 (26.32%), Postives = 67/133 (50.38%), Query Frame = 2 
Query: 1565 CHQGTYSKLEVIIHQAKNLVRKS-NAMINPYAKVSFYKDGSVETKETTH-QTNERNPIFNESLDFNANTDVGSPLTTYSLVVTIMHHSILRKDSPIGHVIFTLNSPQETAEKHFKMAENDPHRRITEWHKLID 1957
            C+Q T + L V++ +A++L +   + + +PY KV+ Y      +K+ TH +    N +FNE   F+   +    ++   LV+     S   ++  IG ++    + + T  +H+K   + P R+I +WH L D
Sbjct:  296 CYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCEGLEDISVEFLVLDSERGS---RNEVIGQLVLG-AAAEGTGGEHWKEICDYPRRQIAKWHVLCD 424
The following BLAST results are available for this feature:
BLAST of TCONS_00061970 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SYT45.711e-1728.35Synaptotagmin-4 OS=Homo sapiens GN=SYT4 PE=1 SV=1[more]
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