TCONS_00061963 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061963
Unique NameTCONS_00061963
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length237

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061963 ID=TCONS_00061963|Name=TCONS_00061963|organism=Clytia hemisphaerica|type=transcript|length=237bp
GGAATAAATAATTGATATCCAATATCAATCAATAGCAGTAAATAAGAAAA
TGTCATTGTTAGCAACTTCCTATCGTTATGAAATCGACGGAAGTAAACGA
AAATCTTTACAAAAGGCTCTGGCACGAGAAGAGTCAAGAATCAAGGAAGA
TGAAATGTATGCAGAGCAAACACGAAGACTTGAATCgaATCAAATGGTAA
ATGAAGTCAGCAAATGGACTGAAAATTTGGAGGAggt
Run BLAST on NCBI

transcript from alignment at scaffold_361:1781567..1788076+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061963 ID=TCONS_00061963|Name=TCONS_00061963|organism=Clytia hemisphaerica|type=transcript|length=6510bp|location=Sequence derived from alignment at scaffold_361:1781567..1788076+ (Clytia hemisphaerica)
GGAATAAATAATTGATATCCAATATCAATCAATAGCAGGTTATTGATTAG TAATTGATTGGAAAaagctaccgtcaactgctctaacttgagacgattgg tcgaaacatacTTCAGTATACTTCATTCAGTATACTTCAGTGCagttact ttaatcgtagaaattttagcgagactaattttagcgttttagcgagtttt ccctattttcgctaaaataaatctcgctaaaacatgCCGAATCNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagaatt tatccgcgcgaaatttctggttatattgccttgatatatttttatcaata ggaagggtttcagtgcaaagaaatgctagaaaacgaactaattcaataat gtaatacgagtattcgctaaaatttatccacgcgaaatcttttgaaatcg tgattcgctaaaataaatccaaaataaatcaagattttgacgactcgcta atatacgctaaaattagtctcgctaaaatttctacgattaaagtagtttg atttgatgatattcATCTGTCCAGCTCGTTGGGCCCAACAGGtataattt gatcgaaaagaGCATTTGATTCAGCCAATCTTGTTTGTCGCGACGTAGTG TGAGGTTCGTCGGGTATAGAGCACAGATATTTATCgagaaacatgggact ggtggttgatatctggtctgtcagttacatcaatatgccttcttacctgt ctttaaaaatataaataaaagtaatcacggaaaaggacgcgaaaaaaaaa gacataagtgtgagaacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaagt ttgtctcggcctttttataatgagcaagacatacgttctctgattacgca attttcatattgacattttcgaggcattttgatgtaactgtctgtatttt cactttactgttaaatctctttgaacAACATTTGTCAAATCAGACTTTGG AGGTTTgatgaaatggtggccgaattgcaggcccatgttttgtcagatag tcccaagttagagcagttgacggcaTCAATTGTATCGAGTGGGAGAGTCT GGATTGGTCTTTTTTTTCGTGACATTTATGaagattatttttctcttttt attctaaAGACAAATTAACATTTTTCATGCAAGACATCCTACCTCTAAAG CTGTTAGACTATATCCCATTTTTACACAGCAAGGTACCATAAGCTGGTCT aataatgttgacatccctggGACCTGAAATTTCCCTActtattttttccc tacttAATTTTTCcctgagttttttttttttattttttttattttattta tttgataaagCAGGTTTAAAAAAAACGCAGACTAAGTTGATGTGGACCTG CAACtttttcccgagttatttttctgaGCTCATTTGCTTGTGATTTCATA TTCAGTTTTGGGAGTGATTTAGTTTATATGGGGATGTTGGACATGAGACT AACTTAAACAGTATGGCTGCCATTAAAAATTATTCTTGTTTGCGTCACCC ACCTGCATCATATTTTAcgctgatttttttttggtgtcaagaaccttgta aacattccaaacACCTCCATCATAGGATTTGTCGTAGCTAAGTTCTTCCA TTTTGCGCAGTTTGAAGATTGAGCCGAGAATGCTCGTAGAACGTCTCCCA CACggatgaaaaactttaatctgtcaatcactTTCTCAACTGAAGAGTAT GCAATAGTGCTGCACGCAGATCATCAGTATATAtaccgggtgtctctgaa aaaacttccccctgtttgattcaaaattgagaaaaagtgaaaaaatatat tagcttgattttttcgaaatcgtttagaagagggtttaacttaaattttg gtatatcaaactttaaaattgcttcattagaccaaaagttatgacaaaaa gagtaaaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaatt gttttcaaaaagagcgaaaaaagacgaaaaaacagggtatcaaatTAGAC AAGAAAACACTGTACTTTATTGACAgtaaagttttacttttgaacTTCTG TacatcttttttgttttattattcgtttttaatgatttttattgccAATT TAGAGCTCCTTTTGGATTCATTAATGAGCATGAAGTTTAAACAAGCAACA AACTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNtctaatgaagcaattttaaagtttgatataccaaaacttaag ttaaaccctcctctaaacgatttcgaaaaaatcaagctaatatatttttt cactttttcgcaactttgaatcaaacagggggaagttttttcagagacac ccggtagatagtatttaattatcattatccctttcagtctagacttaaac tcctatatcaggattagaaactaggctagtcttacctctatTATCTTTGC CTTTGTATCAATACAATTCTGACACAAGTTGGCACAACACATTAACAAAT AATCCTGCgagaagtttatatcaaaatctgcaacaaaaatgaaagtgatc tcttctactgattgctttgtGGTGCTCATTTGCGGACTATTTATTTAATT TCCACCAATAAGATGGTCGTATTTTACAAGGTCTTTCTTTTTGGTACCCG TGGTCTTTCAGTGCCTTGTCCGACAATTGGCTGTAAAATCTCACCCTCCA AAACACCtcttttaattttatttgtttcaatcagaAAAGGAGTAGGCTGT TTCTCATCTTCAGTTCTCCAAAGAAAGCAGACATTTGATGTGAGGGTTAG ATTGTcaggtgcatgtcactagtccgacactttctagtccgaaaGTAAAG TAGTCTgaatcaataaaataaattcacaatttagaagtcttttttttcCA CCGTCACTTTTGTctgaaaacgaaagatttttcaCTGAGTTAATATTAAT TAAAGTTCAATTTGGCAGCATTTTGatataattagaaataaaggaccaca aactttaattccagccccccctcccccccaaaaaaagaagggtcgtaaaa acagctaaatccaatttcttgactcttgccTAATCCTAATAAGcatccca aaatttaagaaaagtcgggtttatgggcccaacctcaaagtcgccacttt ggatttttataagcacgtggttgcttataaaagatgtgcctcctctttgg cgattcatatttcgtttcatatgtttttttttgattcGTTGTCGGACAAC ggattgttgtcggaatactgacgcattcgtcaaatccaacgtcaggcatt tttactgtcagactagaaagtgtcggactacagACGACCTCccagattgt caacaaagtgccttaaaaaatcattgaattaaaagaagaactttaaatct taaatattttcattttgaagaagtgGTGCAAAagagtgaaacatggaaaa gttttattttctattGCTTTAATTGAAATGGGagatttgagaaattttct gtgtttagttttttgcacaaacatTTGTAACTATGTACAAGAACACGTCT CTATCAAGATGTTGGctggaaatcgaaaatgaaagtaaaatcggcctgCA CTCATAATCCCACAATCTTGATATtagagtttaagtctatactgccttta ttttcatttctggaacTTTTTCAAAGAAGGAAAGAtagaaaagttatatt ttttttactgctctattcacatactgaatttgaaagatcttctatgtggc gttttttttttttgcaaacttcaaacatttttttgtccTGTTTTAGCGAG ACTTTAGCTTTAAGAGCTTGCATACATTgcaattgttcttatcctgttct tatttatagttAGAGTGTAATAATTGAGGTATTTAAAGTGTTATATCCAA CTTTTACTACtatgacccctaaattgcttttatataaaattgagtaattt caggctcagcattgttcttattttttggcgattttgagcctcattgttct tattaaaaaataagtGTACAACATATAAAAAATAGCGAATAACAATAAAA CCTTTCTGATGGGACTGATTTATACAATTAATCCAGAATCAAATGACTTT TTCTGGCAATTTCAGAAAATAGACCGATGTTTATTTTGACTACAAACACA AATCAGATTGTATTTCATTGTTTACACACTGTATATTTTATTGATCGCTT TTTAGTAAATAAGAAAATGTCATTGTTAGCAACTTCCTATCGTTATGAAA TCGACGGAAGTAAACGAAAATCTTTACAAAAGGCTCTGGCACGAGAAGAG TCAAGAATCAAGGTTAGTGAAAATAAAGTGAATGAAGTTCTTTCAAATTG ATATCCATGTTCCCTTTCAACCCTTAAAAATAATAAGACTTTTCGTAACG TTCCTAgctttgcaaaattttaaaccaatagcatataaaaatcttttttt agaaaaatgaattGTGTTAAAAAGTTGACAGATTTGGATGAAAAGGTTTG ATTTTTCACTTATGAAAAGTTTGACATGATTTCTCTCGTTCTTTGTAAAG GAAGATGAAATGTATGCAGAGCAAACACGAAGACTTGAATCGTAAGTCTT ATAAATTCTTAATGCATTGAAATATCATATCTTCCCAAACAGTGGTCTAC CCAGTTTCTACTCAGTTTATCCATTATTTTCTGTATACCTCAAATTCTTT ACTGATGAAAATGATTATTCCCAATCTTATATATATAATCtaagaatttg tttttttaggaATCAAATGGTAAATGAAGTCAGCAAATGGACTGAAAATT TGGAGGAggt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038845XLOC_038845Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061963-exon-scaffold_361-1491911889:1781567..1781604TCONS_00061963-exon-scaffold_361-1491911889:1781567..1781604Clytia hemisphaericaexon
TCONS_00061963-exon-scaffold_361-1510915933:1781567..1781604TCONS_00061963-exon-scaffold_361-1510915933:1781567..1781604Clytia hemisphaericaexon
TCONS_00061963-exon-scaffold_361-1575043694:1781567..1781604TCONS_00061963-exon-scaffold_361-1575043694:1781567..1781604Clytia hemisphaericaexon
TCONS_00061963-exon-scaffold_361-1491911889:1787472..1787578TCONS_00061963-exon-scaffold_361-1491911889:1787472..1787578Clytia hemisphaericaexon
TCONS_00061963-exon-scaffold_361-1510915933:1787472..1787578TCONS_00061963-exon-scaffold_361-1510915933:1787472..1787578Clytia hemisphaericaexon
TCONS_00061963-exon-scaffold_361-1575043694:1787472..1787578TCONS_00061963-exon-scaffold_361-1575043694:1787472..1787578Clytia hemisphaericaexon
TCONS_00061963-exon-scaffold_361-1491911889:1787817..1787857TCONS_00061963-exon-scaffold_361-1491911889:1787817..1787857Clytia hemisphaericaexon
TCONS_00061963-exon-scaffold_361-1510915933:1787817..1787857TCONS_00061963-exon-scaffold_361-1510915933:1787817..1787857Clytia hemisphaericaexon
TCONS_00061963-exon-scaffold_361-1575043694:1787817..1787857TCONS_00061963-exon-scaffold_361-1575043694:1787817..1787857Clytia hemisphaericaexon
TCONS_00061963-exon-scaffold_361-1491911889:1788026..1788076TCONS_00061963-exon-scaffold_361-1491911889:1788026..1788076Clytia hemisphaericaexon
TCONS_00061963-exon-scaffold_361-1510915933:1788026..1788076TCONS_00061963-exon-scaffold_361-1510915933:1788026..1788076Clytia hemisphaericaexon
TCONS_00061963-exon-scaffold_361-1575043694:1788026..1788076TCONS_00061963-exon-scaffold_361-1575043694:1788026..1788076Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:1781567..1788076 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 3.31709 0 0 0 0 0 17.6266 5.09083 0.573506 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061963 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top