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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061963 ID=TCONS_00061963|Name=TCONS_00061963|organism=Clytia hemisphaerica|type=transcript|length=237bp
GGAATAAATAATTGATATCCAATATCAATCAATAGCAGTAAATAAGAAAA
TGTCATTGTTAGCAACTTCCTATCGTTATGAAATCGACGGAAGTAAACGA
AAATCTTTACAAAAGGCTCTGGCACGAGAAGAGTCAAGAATCAAGGAAGA
TGAAATGTATGCAGAGCAAACACGAAGACTTGAATCgaATCAAATGGTAA
ATGAAGTCAGCAAATGGACTGAAAATTTGGAGGAggt Run BLAST on NCBI transcript from alignment at scaffold_361:1781567..1788076+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061963 ID=TCONS_00061963|Name=TCONS_00061963|organism=Clytia hemisphaerica|type=transcript|length=6510bp|location=Sequence derived from alignment at scaffold_361:1781567..1788076+ (Clytia hemisphaerica)
GGAATAAATAATTGATATCCAATATCAATCAATAGCAGGTTATTGATTAG
TAATTGATTGGAAAaagctaccgtcaactgctctaacttgagacgattgg
tcgaaacatacTTCAGTATACTTCATTCAGTATACTTCAGTGCagttact
ttaatcgtagaaattttagcgagactaattttagcgttttagcgagtttt
ccctattttcgctaaaataaatctcgctaaaacatgCCGAATCNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagaatt
tatccgcgcgaaatttctggttatattgccttgatatatttttatcaata
ggaagggtttcagtgcaaagaaatgctagaaaacgaactaattcaataat
gtaatacgagtattcgctaaaatttatccacgcgaaatcttttgaaatcg
tgattcgctaaaataaatccaaaataaatcaagattttgacgactcgcta
atatacgctaaaattagtctcgctaaaatttctacgattaaagtagtttg
atttgatgatattcATCTGTCCAGCTCGTTGGGCCCAACAGGtataattt
gatcgaaaagaGCATTTGATTCAGCCAATCTTGTTTGTCGCGACGTAGTG
TGAGGTTCGTCGGGTATAGAGCACAGATATTTATCgagaaacatgggact
ggtggttgatatctggtctgtcagttacatcaatatgccttcttacctgt
ctttaaaaatataaataaaagtaatcacggaaaaggacgcgaaaaaaaaa
gacataagtgtgagaacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaagt
ttgtctcggcctttttataatgagcaagacatacgttctctgattacgca
attttcatattgacattttcgaggcattttgatgtaactgtctgtatttt
cactttactgttaaatctctttgaacAACATTTGTCAAATCAGACTTTGG
AGGTTTgatgaaatggtggccgaattgcaggcccatgttttgtcagatag
tcccaagttagagcagttgacggcaTCAATTGTATCGAGTGGGAGAGTCT
GGATTGGTCTTTTTTTTCGTGACATTTATGaagattatttttctcttttt
attctaaAGACAAATTAACATTTTTCATGCAAGACATCCTACCTCTAAAG
CTGTTAGACTATATCCCATTTTTACACAGCAAGGTACCATAAGCTGGTCT
aataatgttgacatccctggGACCTGAAATTTCCCTActtattttttccc
tacttAATTTTTCcctgagttttttttttttattttttttattttattta
tttgataaagCAGGTTTAAAAAAAACGCAGACTAAGTTGATGTGGACCTG
CAACtttttcccgagttatttttctgaGCTCATTTGCTTGTGATTTCATA
TTCAGTTTTGGGAGTGATTTAGTTTATATGGGGATGTTGGACATGAGACT
AACTTAAACAGTATGGCTGCCATTAAAAATTATTCTTGTTTGCGTCACCC
ACCTGCATCATATTTTAcgctgatttttttttggtgtcaagaaccttgta
aacattccaaacACCTCCATCATAGGATTTGTCGTAGCTAAGTTCTTCCA
TTTTGCGCAGTTTGAAGATTGAGCCGAGAATGCTCGTAGAACGTCTCCCA
CACggatgaaaaactttaatctgtcaatcactTTCTCAACTGAAGAGTAT
GCAATAGTGCTGCACGCAGATCATCAGTATATAtaccgggtgtctctgaa
aaaacttccccctgtttgattcaaaattgagaaaaagtgaaaaaatatat
tagcttgattttttcgaaatcgtttagaagagggtttaacttaaattttg
gtatatcaaactttaaaattgcttcattagaccaaaagttatgacaaaaa
gagtaaaaaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaaatt
gttttcaaaaagagcgaaaaaagacgaaaaaacagggtatcaaatTAGAC
AAGAAAACACTGTACTTTATTGACAgtaaagttttacttttgaacTTCTG
TacatcttttttgttttattattcgtttttaatgatttttattgccAATT
TAGAGCTCCTTTTGGATTCATTAATGAGCATGAAGTTTAAACAAGCAACA
AACTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNtctaatgaagcaattttaaagtttgatataccaaaacttaag
ttaaaccctcctctaaacgatttcgaaaaaatcaagctaatatatttttt
cactttttcgcaactttgaatcaaacagggggaagttttttcagagacac
ccggtagatagtatttaattatcattatccctttcagtctagacttaaac
tcctatatcaggattagaaactaggctagtcttacctctatTATCTTTGC
CTTTGTATCAATACAATTCTGACACAAGTTGGCACAACACATTAACAAAT
AATCCTGCgagaagtttatatcaaaatctgcaacaaaaatgaaagtgatc
tcttctactgattgctttgtGGTGCTCATTTGCGGACTATTTATTTAATT
TCCACCAATAAGATGGTCGTATTTTACAAGGTCTTTCTTTTTGGTACCCG
TGGTCTTTCAGTGCCTTGTCCGACAATTGGCTGTAAAATCTCACCCTCCA
AAACACCtcttttaattttatttgtttcaatcagaAAAGGAGTAGGCTGT
TTCTCATCTTCAGTTCTCCAAAGAAAGCAGACATTTGATGTGAGGGTTAG
ATTGTcaggtgcatgtcactagtccgacactttctagtccgaaaGTAAAG
TAGTCTgaatcaataaaataaattcacaatttagaagtcttttttttcCA
CCGTCACTTTTGTctgaaaacgaaagatttttcaCTGAGTTAATATTAAT
TAAAGTTCAATTTGGCAGCATTTTGatataattagaaataaaggaccaca
aactttaattccagccccccctcccccccaaaaaaagaagggtcgtaaaa
acagctaaatccaatttcttgactcttgccTAATCCTAATAAGcatccca
aaatttaagaaaagtcgggtttatgggcccaacctcaaagtcgccacttt
ggatttttataagcacgtggttgcttataaaagatgtgcctcctctttgg
cgattcatatttcgtttcatatgtttttttttgattcGTTGTCGGACAAC
ggattgttgtcggaatactgacgcattcgtcaaatccaacgtcaggcatt
tttactgtcagactagaaagtgtcggactacagACGACCTCccagattgt
caacaaagtgccttaaaaaatcattgaattaaaagaagaactttaaatct
taaatattttcattttgaagaagtgGTGCAAAagagtgaaacatggaaaa
gttttattttctattGCTTTAATTGAAATGGGagatttgagaaattttct
gtgtttagttttttgcacaaacatTTGTAACTATGTACAAGAACACGTCT
CTATCAAGATGTTGGctggaaatcgaaaatgaaagtaaaatcggcctgCA
CTCATAATCCCACAATCTTGATATtagagtttaagtctatactgccttta
ttttcatttctggaacTTTTTCAAAGAAGGAAAGAtagaaaagttatatt
ttttttactgctctattcacatactgaatttgaaagatcttctatgtggc
gttttttttttttgcaaacttcaaacatttttttgtccTGTTTTAGCGAG
ACTTTAGCTTTAAGAGCTTGCATACATTgcaattgttcttatcctgttct
tatttatagttAGAGTGTAATAATTGAGGTATTTAAAGTGTTATATCCAA
CTTTTACTACtatgacccctaaattgcttttatataaaattgagtaattt
caggctcagcattgttcttattttttggcgattttgagcctcattgttct
tattaaaaaataagtGTACAACATATAAAAAATAGCGAATAACAATAAAA
CCTTTCTGATGGGACTGATTTATACAATTAATCCAGAATCAAATGACTTT
TTCTGGCAATTTCAGAAAATAGACCGATGTTTATTTTGACTACAAACACA
AATCAGATTGTATTTCATTGTTTACACACTGTATATTTTATTGATCGCTT
TTTAGTAAATAAGAAAATGTCATTGTTAGCAACTTCCTATCGTTATGAAA
TCGACGGAAGTAAACGAAAATCTTTACAAAAGGCTCTGGCACGAGAAGAG
TCAAGAATCAAGGTTAGTGAAAATAAAGTGAATGAAGTTCTTTCAAATTG
ATATCCATGTTCCCTTTCAACCCTTAAAAATAATAAGACTTTTCGTAACG
TTCCTAgctttgcaaaattttaaaccaatagcatataaaaatcttttttt
agaaaaatgaattGTGTTAAAAAGTTGACAGATTTGGATGAAAAGGTTTG
ATTTTTCACTTATGAAAAGTTTGACATGATTTCTCTCGTTCTTTGTAAAG
GAAGATGAAATGTATGCAGAGCAAACACGAAGACTTGAATCGTAAGTCTT
ATAAATTCTTAATGCATTGAAATATCATATCTTCCCAAACAGTGGTCTAC
CCAGTTTCTACTCAGTTTATCCATTATTTTCTGTATACCTCAAATTCTTT
ACTGATGAAAATGATTATTCCCAATCTTATATATATAATCtaagaatttg
tttttttaggaATCAAATGGTAAATGAAGTCAGCAAATGGACTGAAAATT
TGGAGGAggt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061963-exon-scaffold_361-1491911889:1781567..1781604 | TCONS_00061963-exon-scaffold_361-1491911889:1781567..1781604 | Clytia hemisphaerica | exon |
| TCONS_00061963-exon-scaffold_361-1510915933:1781567..1781604 | TCONS_00061963-exon-scaffold_361-1510915933:1781567..1781604 | Clytia hemisphaerica | exon |
| TCONS_00061963-exon-scaffold_361-1575043694:1781567..1781604 | TCONS_00061963-exon-scaffold_361-1575043694:1781567..1781604 | Clytia hemisphaerica | exon |
| TCONS_00061963-exon-scaffold_361-1491911889:1787472..1787578 | TCONS_00061963-exon-scaffold_361-1491911889:1787472..1787578 | Clytia hemisphaerica | exon |
| TCONS_00061963-exon-scaffold_361-1510915933:1787472..1787578 | TCONS_00061963-exon-scaffold_361-1510915933:1787472..1787578 | Clytia hemisphaerica | exon |
| TCONS_00061963-exon-scaffold_361-1575043694:1787472..1787578 | TCONS_00061963-exon-scaffold_361-1575043694:1787472..1787578 | Clytia hemisphaerica | exon |
| TCONS_00061963-exon-scaffold_361-1491911889:1787817..1787857 | TCONS_00061963-exon-scaffold_361-1491911889:1787817..1787857 | Clytia hemisphaerica | exon |
| TCONS_00061963-exon-scaffold_361-1510915933:1787817..1787857 | TCONS_00061963-exon-scaffold_361-1510915933:1787817..1787857 | Clytia hemisphaerica | exon |
| TCONS_00061963-exon-scaffold_361-1575043694:1787817..1787857 | TCONS_00061963-exon-scaffold_361-1575043694:1787817..1787857 | Clytia hemisphaerica | exon |
| TCONS_00061963-exon-scaffold_361-1491911889:1788026..1788076 | TCONS_00061963-exon-scaffold_361-1491911889:1788026..1788076 | Clytia hemisphaerica | exon |
| TCONS_00061963-exon-scaffold_361-1510915933:1788026..1788076 | TCONS_00061963-exon-scaffold_361-1510915933:1788026..1788076 | Clytia hemisphaerica | exon |
| TCONS_00061963-exon-scaffold_361-1575043694:1788026..1788076 | TCONS_00061963-exon-scaffold_361-1575043694:1788026..1788076 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:1781567..1788076 + |
Blast
The following BLAST results are available for this feature:
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