TCONS_00061953 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061953
Unique NameTCONS_00061953
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2752

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061953 ID=TCONS_00061953|Name=TCONS_00061953|organism=Clytia hemisphaerica|type=transcript|length=2752bp
TGTAAGGGTTGTACTAAACAGTGGAATCTTTTGGATATGATCGCATCGTA
CGGTGGTCAGAACGTTCATCAATTTGTGGCAGACAATCAACTGGAAATGG
GTGAATGGATCGTCTGCATACAAGCTACTATACATAAACTGGAAGAAGAA
GAGCCTCTGCCTCCGCATCCGCTACAACATCAAATCTCCAATGGAGGGGG
CGGAGAGCGCCTCGCCTCACCCACCAGCACCATCGCTCCACCCAATGATT
TATCACCGCCCCCTTCGACTTCAAGTAACAAAGCTGCCTCCCCGATGATG
CCGAAAAAACTTTTAGGATCGGAAAGCAAAAGCGGTGGCTTCAAAGGTTT
CAGTCGCCGACTGTCGAAACGAGTTACGGGAGGTACCGACGAGGAGAAAG
ATAAAACGAGGATCAAAGACAAgctgaaaaaatatttatccaaaCGACCT
TCGTTCAACGAACTCGAAAGTAAAGGAATTATCGCAGattttgttttTGG
CTATCCGCTCGAGAAACTTTGCGAACGTGAAGATAATTTGGTACCTCGAT
TCATTGTTCAAATTGTTCATGAGGTCGAAAAGAGAGGACTTGATGTGGAT
GGCATATATCGTGTCTCTGGTAATTTATCGTCAGTCAATAAACTACGTGG
ACTAATCGACAATGgtGAGATGCCGGACTACTCTCAACCAGAATGGAATG
ACATTCACTTACTGACTGGttgtttgaaattgtatttTCGCGAACTCCCC
GAACCTCTTCTACCCTTTCACCTGTTCGATCGATTTGTTGGTGCTATGAa
aAGCCCTTTCAAGCCTGAGAAGCTGAAACTGATGAGGGAAGTCGTCTCAG
AGCTAAAAGCTGAACGCAAAGAGACTTTAAATCTGCTACTCACGCATTTT
AACAGGGTGATGTCTATGTCTTCGAAGAATCGAATGCATTCACAAAACAT
TGCTATTGTTTTCGGACCGACGCTGATGTGGCCTGAAACGGACTCTATAA
ATGTTGCTATGACGAcggtttttcaaaatcaagtcATTGAATTTCTTGTG
CAAGAGTGGAACGATGTTTATACGATGTAACACAAATTGCTTGGTGCTAA
TGAAATGGTTTTGTTACGAATTACTTCGTTTGTTTTAAAGTGAGGCTAAT
TTGTATGGGAGTGAGGCTGAGTTGTTTATTTCAGATGAATGGTTCCTGAA
GACTTCCGAGGTCTTGTGTATGCCAACGAACTGGTTTGCCACCGAACCTG
GATCTTAATCAGTTAGAGTATTGACACAACTGGACATCATTTtcccccca
ataattttggGTGTGGTCTATGACAACGTGTGAATGACATCAATGCGAAC
ATTTCTGGTGCAGGTGACAGAACCTTGCTGCAACTGCTAGATGCTTGCCT
TGTTCAATAAATAATGAATAAATGTTGTATTGATTTCGCTTTTCCAATAA
CACAATAACTCGCTCACCAACAGCCTGAGTTTGATTTCTCACTGTTTTTA
AGAACGGTCGATGAAGTGACAGAAAAATGAtgactttcaaaaaacaatga
taaagaaTGAATGAtgttgaatgaatgaatgaatgaaaataaTACAGCAA
GTTTAGAATTTGATAATTAAAGAAatagcaataatttcaaaatttttaat
ataaCGTCTATATAAATATGTCTAGAATTTttagttaatttttttattac
tacTGATGGTCGGTTTTTGCTACATGTGAATTTATTATATTATTGTTATT
GATGGATTTATATGAAAATTATCTTGTCCAATGTTTTTAGGGGAGGGCAC
CTGTTTTTCTGAGATGTTCCTTTTTTTCTGCGTTTTAAGttactttttta
tgttttttaaggTTTATTTATTACTGTCACTTTCGCCAACCGATACCTAC
AGCGTTTCAAAAGAAGCCTGTGTTTTCTCGTTGATTTCCTCTGTACAAAG
Tcaactgttttcaaattttaaacttttttttttcgttcagttcttttttt
ttttgttcgttctCTTATTGgacatttttttatgtttttttgtacttttt
gctATTTGTTATTTCACAACGACATAATTcaatttcgaaaataatttgTT
CAATCATAGACAAGGACAACAAATAATTCATTATAAAAGTAGTCCTGAAA
CCATTTGTTTTAGGTGTGCACTAGTTTTTGTTATCCCTGCTACTTTTGAA
CAAATGTTTTAATGtaatcttaaaaagttataaacctttgaaaaaccttt
gaaaagataattcagaggtCTTTAACTGACAAAAGATGATgataaatttg
cgaaaaaacagagaagaaaaagaatttaatATCCCTTGATTCTAGAAACT
TTATTTTTGGTACTAAATTACTTTGAAGCCCTGATTTCaactaaataatt
atttttccctGCATTATTGCATCTAAAGTTGCAGCCTTCAACGAGCTACC
TTTTGGAGACtgtaatttttgaaacattcattcaaaaatggcaagcaaaa
caaGGATAAGTGCAAACTTAAAAGCGAATTGACtctagtttttaattttt
gttggaatgatctttttgattttatctGCTACCAGTGATCGAATTTCCTA
TTATGTAATATACTTAAATCATCCGACTACCAGTCGTCTACTACTAAACT
TGAAACTAAAACTGTGTAAATTTTCTTGCTTTTGCTTAATATCAAattgt
ttttgtataaaaaagatATAATTATCAAACCTAACCATTTGTTACGTCGT
TT
Run BLAST on NCBI

transcript from alignment at scaffold_361:1650912..1660781+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061953 ID=TCONS_00061953|Name=TCONS_00061953|organism=Clytia hemisphaerica|type=transcript|length=9870bp|location=Sequence derived from alignment at scaffold_361:1650912..1660781+ (Clytia hemisphaerica)
TGTAAGGGTTGTACTAAACAGTGGAATCTTTTGGATATGGTAGATATCTT
TTACTGCTTGATGAATACTAAAaactttcttcaatttttattactACTAC
CATAGAATTTTGtactttattctttttttgattaCTAATCTGAGAGAACT
TTACTCAATAGAAGTTTTGTTACAAGAAAGGATACTTCACACACCTTGAA
AATACAATAATTTGATGATATATTTATTATTACGTATATAGATCGCATCG
TACGGTGGTCAGAACGTTCATCAATTTGTGGCAGACAATCAACTGGAAAT
GGGTGAATGGATCGTCTGCATACAAGCTACTATACATAAACTGGTAAGAA
CACTCTTTAAAGTCAATGTTTGATGAGCAGAATCACCCTATTAAGTGTTT
TACATAATAATAATGCATTGCAACAACCTCCAAATCTAATGCCAGCACTT
AATTTTGCCCAAATTATCCTTTTCAATTGCACTTCGAGCTAATTTAAAAG
TATTGGATCTCAAATTCAAAGTCATTGGTCGTGACGTCATCAGCAAATTC
TTTTAAGATGACGTAGTGTCATAAAATCTCTCTTTGTTTACATGAGGTAT
CAACTCTATAGTAGGCTCTTTAATTTTCAAATCCAAATGTACAAGTTCGA
GCATGCAGCCAACTTAATATGGCCAAGCTCTTTAACTATTTGACATCATG
CTGTTTGTGCTCTCTGCCCACcagttatttcaaaattcagtttCACTATC
CAAAATATGATAACTATACGATAACAGATAATTCACTGGACAACATTGAT
AAATAAGTACCTCAAGTCACTGAGAAACTGTTTTAAGCTTAAAGCTTTCT
TACCTGACATCATTGTCCACCATCTTTCTTTGTTGTCTCCATGGCAACTT
GTTACATACCATCAACAATTTTGCATTATATCCTGTTCTTTTAACCATtg
acatatttttattttatcttctctaaaagtaagaaaatatatCAACCCAT
ACACTATTATACTTACTATCTTGCATGATATAAAGTGGTTTTTCTTACTT
TCTATAACTTTACAAAAGAATTTAGACTGTACGACTTGTTATAATGTATA
ACTCTTTTGCATTTTATACCATACAAACAAAGATACAAATGCAAGCGTTA
GAGAGCTCAGTTTACAAGGTCAACATTCACTGCTACTTCGCCAATTTACA
GTATATCTTTATACTGCATCTTTTGTGTGTACGATGGATATTTGTGCTGG
AAAAAGTACAGTTACAGTTTATAGTTATTATCGATATCAAAGTTGAGAGC
TTTATTATTCAGTCTTGATTAAAGGCTtacatttttgatttattaGAGTC
GTGTAGAAATATCTATATACTATAGAACATACAATGTATtggacggagga
tcgagacaaaaataccattatatGCTAGTGTTGTTGGTAACATCTCAATT
AGGTTCCACTAACATTCAAGTTTTTATATCACTAAAAGATATCTTCGATC
CCACACGACTCTATCCACGATCACATCCCAACATATAAGGAAGGATGACA
GCAGCTGACAACAATTTTTATTAAGATAGTTTGATATCCTACTAGACACG
ACAGTTATTTTAATGGTTTGGCGTGGAGTTAACAACTTGATTAAATGACT
TTATAATGGGTTAACGATGTTGTCATTCTCATTAAGAATACTACAGATTA
TGTTATGTTTTCATCTCTGTCAAACaacttgttttgaattttgtgaTACT
TTTCTCctcttgttttgatgttttcgtTTTGACTTGGTTTTTGTTGTTCT
TGACTTCTTTTTTTTAGAACCATGACTATGTTTCGACGGTTTTCGTCCTC
TTTATTTTATTCCTTTTAGGGATACAGAATATCCTCTCCCGCTCTTCTTG
TTTTTCGAGTGCAGCATATGTTTCAACTAAAGCAGACCAATGCAATTTTT
CTCACAAATAGCTACATATTCAACCCGTCCGTCTCTGCTCTCCTTTTCCC
ACAAACATTAAAGTgcacaaaaataatcaaaaatggTGTGGTTTTCCAAG
AACCATTCCCTAATAACTTGACGCTGACCAATCTTAAACTCAATTCAAGG
TTTAATAccaaacttattttcaatatatcAATGTGAGTTAAGTATAAACA
TTGATAACTCATTAATACTGAGAACCATGCAACATCAGCAAACTTCCATC
TCCTCCTCCTCTTAATTCGAAAGTGAAAGTTAAAAGAAATATGTCAAGTA
CAATTTGTCATTTAATAGTTATGCATTTATCAGCATTTTCCCCTGGTTTT
ACGTTGAATCCAACCTCTATTTGGTgtattcaaaaattatatgaaatgtA
ATGATACAGGTagtatatacattttaaaatatCGCAAAATTACCTGTTGA
CTTTTTGTGAATATAGTTTTACGCTggtttggaatatttttgtcgttttt
tgaagttaaaaaaGCTGTAGGACAATCAATGACAAACTAAAGTTTGGGAG
CAGTTTTACTTCtactttctttttgctataGCCCTCAGCTCAGATTTTCT
GTTTTTATGATATAATGGTTCTAACTATTGAATCACAGAAAGTAAAGAAG
CCAAACTTTGGTGTTTAAACGATAAATTAGTTTTTGTTTGACTTCAATGT
CATTTTAATGGTATCAAAATAAAAGTGACGATTTTCATGGAgagattaga
aaaaaattcGTTGGTTTTTAAAACACGcaacaaaaacaacattaaAAACA
ACAGAAATATGTTAGTAGGGACCTTTCTCTCCTCAAAACACAAGTGGATA
ATTTTGCTCTGTTAAAAAGCTTGTCAACTATAAGTTAATGTGCTGCGAAT
ACAAGTTGTCGTcttatttgaaagcttttgatagCTCCTGGTATATTTTT
GGGGgtgatttgtttgtttgtttgttaatGCAAAGATATGAAAGTTCAAT
TGTTGAAGTTCAgaagaatatcttcaaattcGAATGTAAGTTTCCTTTTC
ATCGAAACACATTTTGAAGGCTTATTCAATGAAAGTATGTActgttgact
ctctctaattcgatctttatggaaccaaagttgttttttttcaaattaga
gaaaaattcaaattttaaccaCTTTCGAGGgatcaatattttagttcgaa
ttacaaaaaaattcgaataatagaggttcgaattagagtgaGTTGATTTC
AATGGAAGGATGATTTAACCCTTTGTGCGCGCtggtttttttttaagttg
aaGTGTGTCAGGTGCTATAGCCCGAACTAGAAActaaatttcatcaaaac
aaGTACATCCATACCAAATTCATGAAAACGTTCTACTGCATGCCCTCAAT
CCCTCTTCTTAAAGCTGAGTAATTCAGTTATAGTTCCCTTGTATGACTCA
GATTTATGCATTATTAATAACCTAAAAAAGTACCTTTTTACAGATTTTGT
TACTAGTACTTTCACAGTAAGTATTTTTCCGAAAACTTTCTAACACACAA
CAAAGCATAGCCATCTGCCATGCGATGCTTACTTTAAATACCGTGGAAGC
TGTCACTCTTACTCACTCTTACAAGGCAAAAGAGACGATCAACTGAAAAT
GCTTTAttcgttttgtttttttaattctcgGATGTAATGTATCTTACCAa
cacataactttttgaaaactaATAATGCCAGTGGCCAATTCAAATCTCTG
CGTTCTTGTTTATAACACTTTATTTTCCACCGAATCTGCCACGAAACGAA
GATTTCTCAAGCTACCAGATTGTGATGCATGATACTCACAAACTTTTCCT
TTCCTCGTTCTCCTTATGCAAATGATTGAGCTTGCACTTCTTTTATTTAC
tttctttctttggtttttatttgaCGAATATTCTCTTTTGCTTGCTTTCA
TCAGATTCCAAAAGTTTCTTTGACATTTGAATGTCTTTTAAAAGAGGAGT
TTACTCGATGTTATGTTTTAACAAAAACTTCAGGTAGATATTGGTTGTTG
GTTGTTTTGGATAGGTTTGTTGGTAAATTAGAAGTTCAATCGACACTAAG
ACTTGTTATTTTTAGATCTAGCTCCCTAAGGAATCTATTTTAAAAGTAGT
TTTCAAACTTGAGGGCGGTGGTTTTTGCATGGGAGGGAGCAATAACAGTT
TGACAATTTCGTATTTCTACTTGTATATCCAATCTTCGACATACTTGATC
GAGCCTTCTGTCTACTGACTAATAATCTAATTTAAAGTGATAGAACTAAC
TAAACTAAAGTTGAACCTCTGGGCTTTTACGTTCCTACAAGTCTAGTTTG
AGCACATGTAACGATATAAACTTAGATTCATAAAATGGAATTGCGTCTAC
ACTAGTGACTCTATACCAGAACATACAAATCaaataaagttttcaaaaga
atgACTGGAGCAAAGTTTAAGATATTTTTTGGCTTCAAGGAGGATGTTTG
TGCAGATCCTGTTCTCTTGAATTGCTCTCAAAGAATCGTGGTAAGAAGAA
CTCCTGATGAAATTTCTATTGGGCCGCTCTACATTCATGACTTTTTTACC
TTTCCCATGTCTAACATTCAGGCGATTAATTTTTCACCAAACGTGCTCTC
CTAAATATGTTTTGGAGCattgtttttcaaacttactttTCCTCCTTCAA
ACGTTAAACTTCTGAATTTCATTGGTCGAAAATATTTAACAGTGTTAGAA
GTTGCTTCTTTTGCGAACGAAAGATCCAAGCTCTTCGCTTTTATTCTCAA
CGTATTTCAACTCGTTTGTGTGCAATTTTAAACGAAGCATGGCATCGTCG
TTGCTAGGGAACATTATATCACGTGCTTACACATTCGTTACCATTCTCCT
ACAGGAAGAAGAAGAGCCTCTGCCTCCGCATCCGCTACAACATCAAATCT
CCAATGGAGGGGGCGGAGAGCGCCTCGCCTCACCCACCAGCACCATCGCT
CCACCCAATGATTTATCACCGCCCCCTTCGACTTCAAGTAACAAAGCTGC
CTCCCCGATGATGCCGAAAAAACTTTTAGGATCGGAAAGCAAAAGCGGTG
GCTTCAAAGGTTTCAGTCGCCGACTGTCGAAACGAGGTACAGTAAACTTA
TTACTTATtacttattcgaacttctaccGTATTATTTGTCCCCAGTCCCC
GTCACGGAGAAATCCTCCTAATAtgctttttataattcgaatccctctat
aattcgaacaaataatatTCCCCGTTccagttcgaattagcgaggtactt
ctttcttattttcctttttgtgcaTCGGAGTTTTTAAATCGGGGATTTCA
CAAGGGTGcggaaatcaaaatttttagaatatctGCCTGTTTGACAAGGA
ATTTTCCAGTAATGATTGCACAGTGTAGCAAATAtgatttcatttctttt
gaCATCAGTTACGGGAGGTACCGACGAGGAGAAAGATAAAACGAGGATCA
AAGACAAgctgaaaaaatatttatccaaaCGACCTTCGTTCAACGAACTC
GAAAGTAAAGGAATTATCGCAGGTAGGAATCATGTGAAGATCCTGTCTGT
CtgcctgtctgtctgtctgtcttgTTTGCTGGTCTACATGTAGTGACATT
AAGGAGACTTTATTTGAGAGTTCTTTTTAGCGATAAATCTCTGTAAACTT
TCTTGTAGCTGACTTCTAAATTTGATGGTATGCCATTATCTTGCTGTTTC
tgagctctagtttagacggccctcTTTTAaggtcaatgcaatgtcttttt
tcaatcttttccaagcaaagattttaactgccaactttgtgcccactttG
TGCCTACTCTAATAATTAGAATAGGCtaggcagaaagtcggccgtctaaa
ctagagctgaGATTTTTTACtcttatatttttcagattttgttttTGGCT
ATCCGCTCGAGAAACTTTGCGAACGTGAAGATAATTTGGTACCTCGATTC
ATTGTTCAAATTGTTCATGAGGTCGAAAAGAGAGGTCAGTGAAAAAAAAg
ctttcagatttttcaaaagctCACCTATTAAGTAAAGAGTCAGGAGAGTT
GAACCTTTCATCAATAAAGTGTATTATCAAAGGAAATAGTCcctcaaatt
tttccaaaagaattaGTCCAAAACTGAGAGAACTGTTGTTCCTACATACA
AATTAAAAGGAGCAAAATTGAAGTGATGAATTTGTATCATTATCATTTGT
TTGTTAACAGGACTTGATGTGGATGGCATATATCGTGTCTCTGGTAATTT
ATCGTCAGTCAATAAACTACGTGGACTAATCGACAATGGTATGCTTAAat
catttcttttttattattggATAACTTACTCCGGTGGGTTCATTGGAAGA
TATGCATTCTTAGAATCTTTTGCTAGAACCCTTTGTTTTGCATAATGTGG
AAGCGTGGAAAAACTCAGTGCTACTGACAGCGCAAGATCTTTGGCCTGAT
TCGgcaatacagttgactcttCATGAATCAAACACGCACGGAGAACACAA
GTTTGATCGAGTAATGGAAATGTTGAGTTATGGAGTAACTTAtataagac
attgttaactgaagggaccggAAAACGTGTCCAAGTTATTGAGACCCGat
ttaaagagactccactctAGTGCcaaataccgagtttatgtatgtgtgtt
ttctgCAAcagagacggtaaggttctaatttgactagatcctgaccagct
gaggacgacggtgaatcagcacttttaccgtcctcgatattgcgggtcag
aactgcgggttattccaaatcgcttcagtgactttaccgtcctcaaaagt
gcaaatacataaactcgctaatgtgtGTAGCGGTAACGTTACCAAATTCT
TGACATTCTAttgctcttctttttttttgaaggtGAGATGCCGGACTACT
CTCAACCAGAATGGAATGACATTCACTTACTGACTGGttgtttgaaattg
tatttTCGCGAACTCCCCGAACCTCTTCTACCCTTTCACCTGTTCGATCG
ATTTGTTGGTGCTATGAGTAAGTCACCGACCTTTTCTGTTCACCAAACTA
TAGTCCTTCCAAACAAATAGAAGCTCAGAGATGAGGTTGTCCCTAATTAG
TTggaaatataaatttctaccatgtaacacccctgtctcagtgccccggt
ggtaccttttccctcagtggggatgaaaacttctatcgaaatcccaatgg
ggatagaaaatctattgtttccagctcgaaaatttcagtggggatggttt
tggagtccaattttttccattcaattttcaatggggatagaatcatAGGG
CAATTTCCCAGTTGGGTTGAAAATGTAGGCTATTTTTTCCACTGgagacg
attttttggcctatttttccaccggggcgggggtccaccgggtctgtgac
acaggggtgtcatgTAAAAAGAGTGCAGGAACTTACAGGACTTTTCATAT
cgatttctttctttgtttagaaAGCCCTTTCAAGCCTGAGAAGCTGAAAC
TGATGAGGGAAGTCGTCTCAGAGCTAAAAGCTGAACGCAAAGAGACTTTA
AATCTGCTACTCACGCATTTTAACAGGTAGTGTATATTATGCTGAAGAGG
TCTGTTGTGAAGGCATTAAATGTTGAAATGGACACGTAAAGCTAGCATTT
CATTGGTTCTAAACAAGCAACCGTAGCTTGAAGGTAGAGCATCTGGCTAC
GGTGTGCAAGGTCTTAGGTTCAAACCCTgaccgggtcataccaaagactt
cttaaaaatggtacttgatgcctctctgcttgatgctcagcaattaaggg
aaggatcaagggtaagtggaggaatccagagagaaagagtggcgccctcc
cctactttcgggtagacagctatcgaaagagaagccttcagggtcgcctc
cgactgcggtcgcagattTACTTACTACTAAACAAGcgaaatgttttatt
ttcaatctcTAATCTCGTGTTTAAATTTAGCCCTATCGTTGTGGAATATT
AATTGAATTTGTTGTTTTTCCAGGGTGATGTCTATGTCTTCGAAGAATCG
AATGCATTCACAAAACATTGCTATTGTTTTCGGACCGACGCTGATGTGGC
CTGAAACGGACTCTATAAATGTTGCTATGACGAcggtttttcaaaatcaa
gtcATTGAATTTCTTGTGCAAGAGTGGAACGATGTTTATACGATGTAACA
CAAATTGCTTGGTGCTAATGAAATGGTTTTGTTACGAATTACTTCGTTTG
TTTTAAAGTGAGGCTAATTTGTATGGGAGTGAGGCTGAGTTGTTTATTTC
AGATGAATGGTTCCTGAAGACTTCCGAGGTCTTGTGTATGCCAACGAACT
GGTTTGCCACCGAACCTGGATCTTAATCAGTTAGAGTATTGACACAACTG
GACATCATTTtccccccaataattttggGTGTGGTCTATGACAACGTGTG
AATGACATCAATGCGAACATTTCTGGTGCAGGTGACAGAACCTTGCTGCA
ACTGCTAGATGCTTGCCTTGTTCAATAAATAATGAATAAATGTTGTATTG
ATTTCGCTTTTCCAATAACACAATAACTCGCTCACCAACAGCCTGAGTTT
GATTTCTCACTGTTTTTAAGAACGGTCGATGAAGTGACAGAAAAATGAtg
actttcaaaaaacaatgataaagaaTGAATGAtgttgaatgaatgaatga
atgaaaataaTACAGCAAGTTTAGAATTTGATAATTAAAGAAatagcaat
aatttcaaaatttttaatataaCGTCTATATAAATATGTCTAGAATTTtt
agttaatttttttattactacTGATGGTCGGTTTTTGCTACATGTGAATT
TATTATATTATTGTTATTGATGGATTTATATGAAAATTATCTTGTCCAAT
GTTTTTAGGGGAGGGCACCTGTTTTTCTGAGATGTTCCTTTTTTTCTGCG
TTTTAAGttacttttttatgttttttaaggTTTATTTATTACTGTCACTT
TCGCCAACCGATACCTACAGCGTTTCAAAAGAAGCCTGTGTTTTCTCGTT
GATTTCCTCTGTACAAAGTcaactgttttcaaattttaaacttttttttt
tcgttcagttctttttttttttgttcgttctCTTATTGgacattttttta
tgtttttttgtactttttgctATTTGTTATTTCACAACGACATAATTcaa
tttcgaaaataatttgTTCAATCATAGACAAGGACAACAAATAATTCATT
ATAAAAGTAGTCCTGAAACCATTTGTTTTAGGTGTGCACTAGTTTTTGTT
ATCCCTGCTACTTTTGAACAAATGTTTTAATGtaatcttaaaaagttata
aacctttgaaaaacctttgaaaagataattcagaggtCTTTAACTGACAA
AAGATGATgataaatttgcgaaaaaacagagaagaaaaagaatttaatAT
CCCTTGATTCTAGAAACTTTATTTTTGGTACTAAATTACTTTGAAGCCCT
GATTTCaactaaataattatttttccctGCATTATTGCATCTAAAGTTGC
AGCCTTCAACGAGCTACCTTTTGGAGACtgtaatttttgaaacattcatt
caaaaatggcaagcaaaacaaGGATAAGTGCAAACTTAAAAGCGAATTGA
CtctagtttttaatttttgttggaatgatctttttgattttatctGCTAC
CAGTGATCGAATTTCCTATTATGTAATATACTTAAATCATCCGACTACCA
GTCGTCTACTACTAAACTTGAAACTAAAACTGTGTAAATTTTCTTGCTTT
TGCTTAATATCAAattgtttttgtataaaaaagatATAATTATCAAACCT
AACCATTTGTTACGTCGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038839XLOC_038839Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061953-exon-scaffold_361-1491911889:1650912..1650950TCONS_00061953-exon-scaffold_361-1491911889:1650912..1650950Clytia hemisphaericaexon
TCONS_00061953-exon-scaffold_361-1510915933:1650912..1650950TCONS_00061953-exon-scaffold_361-1510915933:1650912..1650950Clytia hemisphaericaexon
TCONS_00061953-exon-scaffold_361-1575043694:1650912..1650950TCONS_00061953-exon-scaffold_361-1575043694:1650912..1650950Clytia hemisphaericaexon
TCONS_00061953-exon-scaffold_361-1491911889:1651153..1651254TCONS_00061953-exon-scaffold_361-1491911889:1651153..1651254Clytia hemisphaericaexon
TCONS_00061953-exon-scaffold_361-1510915933:1651153..1651254TCONS_00061953-exon-scaffold_361-1510915933:1651153..1651254Clytia hemisphaericaexon
TCONS_00061953-exon-scaffold_361-1575043694:1651153..1651254TCONS_00061953-exon-scaffold_361-1575043694:1651153..1651254Clytia hemisphaericaexon
TCONS_00061953-exon-scaffold_361-1491911889:1655766..1655997TCONS_00061953-exon-scaffold_361-1491911889:1655766..1655997Clytia hemisphaericaexon
TCONS_00061953-exon-scaffold_361-1510915933:1655766..1655997TCONS_00061953-exon-scaffold_361-1510915933:1655766..1655997Clytia hemisphaericaexon
TCONS_00061953-exon-scaffold_361-1575043694:1655766..1655997TCONS_00061953-exon-scaffold_361-1575043694:1655766..1655997Clytia hemisphaericaexon
TCONS_00061953-exon-scaffold_361-1491911889:1656320..1656433TCONS_00061953-exon-scaffold_361-1491911889:1656320..1656433Clytia hemisphaericaexon
TCONS_00061953-exon-scaffold_361-1510915933:1656320..1656433TCONS_00061953-exon-scaffold_361-1510915933:1656320..1656433Clytia hemisphaericaexon
TCONS_00061953-exon-scaffold_361-1575043694:1656320..1656433TCONS_00061953-exon-scaffold_361-1575043694:1656320..1656433Clytia hemisphaericaexon
TCONS_00061953-exon-scaffold_361-1491911889:1656797..1656895TCONS_00061953-exon-scaffold_361-1491911889:1656797..1656895Clytia hemisphaericaexon
TCONS_00061953-exon-scaffold_361-1510915933:1656797..1656895TCONS_00061953-exon-scaffold_361-1510915933:1656797..1656895Clytia hemisphaericaexon
TCONS_00061953-exon-scaffold_361-1575043694:1656797..1656895TCONS_00061953-exon-scaffold_361-1575043694:1656797..1656895Clytia hemisphaericaexon
TCONS_00061953-exon-scaffold_361-1491911889:1657122..1657199TCONS_00061953-exon-scaffold_361-1491911889:1657122..1657199Clytia hemisphaericaexon
TCONS_00061953-exon-scaffold_361-1510915933:1657122..1657199TCONS_00061953-exon-scaffold_361-1510915933:1657122..1657199Clytia hemisphaericaexon
TCONS_00061953-exon-scaffold_361-1575043694:1657122..1657199TCONS_00061953-exon-scaffold_361-1575043694:1657122..1657199Clytia hemisphaericaexon
TCONS_00061953-exon-scaffold_361-1491911889:1657794..1657928TCONS_00061953-exon-scaffold_361-1491911889:1657794..1657928Clytia hemisphaericaexon
TCONS_00061953-exon-scaffold_361-1510915933:1657794..1657928TCONS_00061953-exon-scaffold_361-1510915933:1657794..1657928Clytia hemisphaericaexon
TCONS_00061953-exon-scaffold_361-1575043694:1657794..1657928TCONS_00061953-exon-scaffold_361-1575043694:1657794..1657928Clytia hemisphaericaexon
TCONS_00061953-exon-scaffold_361-1491911889:1658382..1658487TCONS_00061953-exon-scaffold_361-1491911889:1658382..1658487Clytia hemisphaericaexon
TCONS_00061953-exon-scaffold_361-1510915933:1658382..1658487TCONS_00061953-exon-scaffold_361-1510915933:1658382..1658487Clytia hemisphaericaexon
TCONS_00061953-exon-scaffold_361-1575043694:1658382..1658487TCONS_00061953-exon-scaffold_361-1575043694:1658382..1658487Clytia hemisphaericaexon
TCONS_00061953-exon-scaffold_361-1491911889:1658935..1660781TCONS_00061953-exon-scaffold_361-1491911889:1658935..1660781Clytia hemisphaericaexon
TCONS_00061953-exon-scaffold_361-1510915933:1658935..1660781TCONS_00061953-exon-scaffold_361-1510915933:1658935..1660781Clytia hemisphaericaexon
TCONS_00061953-exon-scaffold_361-1575043694:1658935..1660781TCONS_00061953-exon-scaffold_361-1575043694:1658935..1660781Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:1650912..1660781 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00414918	0	0	0	0	0	0	0	8.62302	12.0854	3.6279	4.17202	0	0	0	0	0.73267	1.02769	4.47166e-06	0	4.38382	4.37103	2.93022	3.58606	0	0	0.867573	2.549e-06	0.00154223	0
Blast
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BLAST of TCONS_00061953 vs. Swiss-Prot (Human)
Match: RHG27 (Rho GTPase-activating protein 27 OS=Homo sapiens GN=ARHGAP27 PE=1 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 6.222e-53
Identity = 99/213 (46.48%), Postives = 142/213 (66.67%), Query Frame = 1 
Query:  433 YLSKRPSFNELESKGIIADFVFGYPLEKLCEREDNLVPRFIVQIVHEVEKRGLDVDGIYRVSGNLSSVNKLRGLIDNGEMPDYSQPEWNDIHLLTGCLKLYFRXXXXXXXXFHLFDRFVGAMKSPFKPEKLKLMREVVSELKAERKETLNLLLTHFNRVMSMSSKNRMHSQNIAIVFGPTLMWPETDSINVAMTTVFQNQVIEFLVQEWNDVY 1071
            +L +RP+   L  KG I D VFG  L  LCERE + VPRF+ Q +  VE RGLD+DG+YR+SGNL+++ KLR  +D+ E  D     W D+H++TG LKL+FRELPEPL PF  F +F+ A+K   +  + + +R++V  L A   +TL +L  H  RV+    +NRM  Q++AIVFGPTL+ PE +  ++ MT VFQNQV+E ++Q+  D++
Sbjct:  674 FLQRRPTLQSLREKGYIKDQVFGCALAALCERERSRVPRFVQQCIRAVEARGLDIDGLYRISGNLATIQKLRYKVDHDERLDLDDGRWEDVHVITGALKLFFRELPEPLFPFSHFRQFIAAIKLQDQARRSRCVRDLVRSLPAPNHDTLRMLFQHLCRVIEHGEQNRMSVQSVAIVFGPTLLRPEVEETSMPMTMVFQNQVVELILQQCADIF 886
The following BLAST results are available for this feature:
BLAST of TCONS_00061953 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RHG276.222e-5346.48Rho GTPase-activating protein 27 OS=Homo sapiens G... [more]
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