|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061949 ID=TCONS_00061949|Name=TCONS_00061949|organism=Clytia hemisphaerica|type=transcript|length=944bp
gaaaaattgaatttttgaagatttatgGATATTTATAAATCAGAAAGTTT
TGTTGAAATTTCGAAATGGTTCTCCAATTTTCGTTTATATGCTTGATCGT
TTTCAGTGGAGGATCTGCTGAAATTCTTGGTGTGCCACCGAACAACCATG
GGAAGGAGGCCATCATTCTGGTTGGTGAACAAGAAGAGACATTAACTGCA
AACAATTTGAAGTTGACGCTTCCCATCCTTTCAACAGAGTGGTCCCTAGA
ACTCTCATTCAAATTATCACCAACGCCTGGCGGTAACTGGTGCAATATTC
TCCATTTTACACAAAACGGCAATCAAGGTAGTGTAGGGGATCGAATTCCT
GCCGTCTATTGGAGAACCTCGACTAAATCTTTCACAGTGTCACTTTCCAT
GAATGGAAATGTCAAAGAGGTTTTCAACCCCATACCAGACTTGGTTGTCG
ATCAAACATACAATATGGAGCTTCACCATCGATACGCGAGTGGAGgtgtt
tacaaattttcaatttttgtaaatgGTGAGATGACAGACACACAAGAAAA
CACTCAAGCACGGCAACTTTATGATGTGAAAGCATATATTGGTGGGCCCT
TCTCTCTAGCTTGTCAAGGAAAGATCAAAAACGTCAAATGGACAAACTTT
TTATAATAATGTAACTTTTCTAAACACGCAATTGTAAAGAAATGTTatat
tttggctaaaatttaTAACATTGTGACGCAATAAAAGTACATTTTCCCTT
TCTCTTGTCAAAATGTAGCGAACTACAAGCACTCTCgggaaaaaatatat
aattataTGTAGTTACGGCATTTGTATATTAGCATGTATTATTACGGATT
TTACTGTCCTCTTGTAATCTTTTGAATTAACTTTTAGTTGTGACTGCAGC
CAGATAAAGTCTGTATGTAAAGCTATTTGTATAACTTTCCGTCA Run BLAST on NCBI protein sequence of TCONS_00061949-protein >TCONS_00061949-protein ID=TCONS_00061949-protein|Name=TCONS_00061949-protein|organism=Clytia hemisphaerica|type=polypeptide|length=196bp
MVLQFSFICLIVFSGGSAEILGVPPNNHGKEAIILVGEQEETLTANNLKL
TLPILSTEWSLELSFKLSPTPGGNWCNILHFTQNGNQGSVGDRIPAVYWR
TSTKSFTVSLSMNGNVKEVFNPIPDLVVDQTYNMELHHRYASGGVYKFSI
FVNGEMTDTQENTQARQLYDVKAYIGGPFSLACQGKIKNVKWTNFL Run BLAST on NCBI transcript from alignment at scaffold_361:1627891..1629834+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061949 ID=TCONS_00061949|Name=TCONS_00061949|organism=Clytia hemisphaerica|type=transcript|length=1944bp|location=Sequence derived from alignment at scaffold_361:1627891..1629834+ (Clytia hemisphaerica)
gaaaaattgaatttttgaagatttatgGATATTTATAAATCAGAAAGTTT
TGTTGAAATTTCGAAATGGTTCTCCAATTTTCGTTTATATGCTTGATCGT
TTTCAGTGGAGGATCTGCTGAAATTCTTGGTGTAAGTGGATATTATTGTT
GATTTTACATAACCACTGGTAGAGGATGAGTCAGGGGCGCGGCCGAGCGG
TAAAGCGTTTGTCTCTTGACAGGAAGGTTGTCGTGCAAACGAATCGACTT
AAAGGGGCATATAAAAggagtaaaatgtaaacattgcgcgataTAAAACA
Atcgaaacaatcaaaatcagccatatttgttttgattttgtatcccgctg
catacggtttgtttacaaatttcgtcagtacttttatgtctcTTTAATAT
AATTTGCAGTGAAGACAAAATAACTGTAtatattttgatagaatttgaat
tagataACGGTTTTTtactcgttgaaaagatatctAGGAGTTTAATCAAA
TAGAAAAACCACACAATGGAACTTTTTCGTCTACGCTGCAAATTATGTTG
ATATGAACTCTACATTTGACATTCTGATTTGTTTCGCTTTAGGTGCCACC
GAACAACCATGGGAAGGAGGCCATCATTCTGGTTGGTGAACAAGGTACGG
AAATATGTATGACTTCTCCGGGGGTGCTCGATTTAAAAAGTGCCGTTTAT
GTGGATAAGAAATAGCGTCTCAAAGTTATTAAGTTACAGTACAAAGACAa
cataccttattacacgaatattactagtcattttattaacacgaattgaa
aaacttcgtgttaataaaaacccccttaattaaaataAGCtatggtgtcc
ttgaaaaagcaataaaattcttgttattttttggtgtgttaatttcaagg
ccatTAAATACTTCCATACTTATATTCGTGTAAGAAGGTAGTCAAATTTG
AGTCAATAAGGGCTGGCGTCCAAAGACGGATACAGTACATTATGATATTG
TCAAATTTTCCTAATTCAAACCTCTATATTACtggaatctttctgtaatt
cgaagagAATTTTGTTCCCTTGAGGATCGAATTAGAGGATAAATGTCAAA
GCAAAGTAAGACGTTCAGACAGAAAGATTTAATAAACTCTGAGTCTGGAT
GAATACTTTTCACTATACATCTTTCGTTTTCAGAAGAGACATTAACTGCA
AACAATTTGAAGTTGACGCTTCCCATCCTTTCAACAGAGTGGTCCCTAGA
ACTCTCATTCAAATTATCACCAACGCCTGGCGGTAACTGGTGCAATATTC
TCCATTTTACACAAAACGGCAATCAAGGTAGTGTAGGGGATCGAATTCCT
GCCGTCTATTGGAGAACCTCGACTAAATCTTTCACAGTGTCACTTTCCAT
GAATGGAAATGTCAAAGAGGTTTTCAACCCCATACCAGACTTGGTTGTCG
ATCAAACATACAATATGGAGCTTCACCATCGATACGCGAGTGGAGgtgtt
tacaaattttcaatttttgtaaatgGTGAGATGACAGACACACAAGAAAA
CACTCAAGCACGGCAACTTTATGATGTGAAAGCATATATTGGTGGGCCCT
TCTCTCTAGCTTGTCAAGGAAAGATCAAAAACGTCAAATGGACAAACTTT
TTATAATAATGTAACTTTTCTAAACACGCAATTGTAAAGAAATGTTatat
tttggctaaaatttaTAACATTGTGACGCAATAAAAGTACATTTTCCCTT
TCTCTTGTCAAAATGTAGCGAACTACAAGCACTCTCgggaaaaaatatat
aattataTGTAGTTACGGCATTTGTATATTAGCATGTATTATTACGGATT
TTACTGTCCTCTTGTAATCTTTTGAATTAACTTTTAGTTGTGACTGCAGC
CAGATAAAGTCTGTATGTAAAGCTATTTGTATAACTTTCCGTCA Coding sequence (CDS) from alignment at scaffold_361:1627891..1629834+ >TCONS_00061949 ID=TCONS_00061949|Name=TCONS_00061949|organism=Clytia hemisphaerica|type=CDS|length=1773bp|location=Sequence derived from alignment at scaffold_361:1627891..1629834+ (Clytia hemisphaerica)
ATGGTTCTCCAATTTTCGTTTATATGCTTGATCGTTTTCAGTGGAGGATC
TGCTGAAATTCTTGGTGTGCCACCGAACAACCATGGGAAGGAGGCCATCA
TTCTGGTTGGTGAACAAGAAGAGACATTAACTGCAAACAATTTGAAGTTG
ACGCTTCCCATCCTTTCAACAGAGTGGTCCCTAGAACTCTCATTCAAATT
ATCACCAACGCCTGGCGGTAACTGGTGCAATATTCTCCATTTTACACAAA
ACGGCAATCAAGGTAGTGTAGGGGATCGAATTCCTGCCGTCTATTGGAGA
ACCTCGACTAAATCTTTCACAGTGTCACTTTCCATGAATGGAAATGTCAA
AGAGGTTTTCAACCCCATACCAGACTTGGTTGTCGATCAAACATACAATA
TGGAGCTTCACCATCGATACGCGAGTGGAGgtgtttacaaattttcaatt
tttgtaaatgGTGAGATGACAGACACACAAGAAAACACTCAAGCACGGCA
ACTTTATGATGTGAAAGCATATATTGGTGGGCCCTTCTCTCTAGCTTGTC
AAGGAAAGATCAAAAACGTCAAATGGACAAACTTTTTATAAATGGTTCTC
CAATTTTCGTTTATATGCTTGATCGTTTTCAGTGGAGGATCTGCTGAAAT
TCTTGGTGTGCCACCGAACAACCATGGGAAGGAGGCCATCATTCTGGTTG
GTGAACAAGAAGAGACATTAACTGCAAACAATTTGAAGTTGACGCTTCCC
ATCCTTTCAACAGAGTGGTCCCTAGAACTCTCATTCAAATTATCACCAAC
GCCTGGCGGTAACTGGTGCAATATTCTCCATTTTACACAAAACGGCAATC
AAGGTAGTGTAGGGGATCGAATTCCTGCCGTCTATTGGAGAACCTCGACT
AAATCTTTCACAGTGTCACTTTCCATGAATGGAAATGTCAAAGAGGTTTT
CAACCCCATACCAGACTTGGTTGTCGATCAAACATACAATATGGAGCTTC
ACCATCGATACGCGAGTGGAGgtgtttacaaattttcaatttttgtaaat
gGTGAGATGACAGACACACAAGAAAACACTCAAGCACGGCAACTTTATGA
TGTGAAAGCATATATTGGTGGGCCCTTCTCTCTAGCTTGTCAAGGAAAGA
TCAAAAACGTCAAATGGACAAACTTTTTATAAATGGTTCTCCAATTTTCG
TTTATATGCTTGATCGTTTTCAGTGGAGGATCTGCTGAAATTCTTGGTGT
GCCACCGAACAACCATGGGAAGGAGGCCATCATTCTGGTTGGTGAACAAG
AAGAGACATTAACTGCAAACAATTTGAAGTTGACGCTTCCCATCCTTTCA
ACAGAGTGGTCCCTAGAACTCTCATTCAAATTATCACCAACGCCTGGCGG
TAACTGGTGCAATATTCTCCATTTTACACAAAACGGCAATCAAGGTAGTG
TAGGGGATCGAATTCCTGCCGTCTATTGGAGAACCTCGACTAAATCTTTC
ACAGTGTCACTTTCCATGAATGGAAATGTCAAAGAGGTTTTCAACCCCAT
ACCAGACTTGGTTGTCGATCAAACATACAATATGGAGCTTCACCATCGAT
ACGCGAGTGGAGgtgtttacaaattttcaatttttgtaaatgGTGAGATG
ACAGACACACAAGAAAACACTCAAGCACGGCAACTTTATGATGTGAAAGC
ATATATTGGTGGGCCCTTCTCTCTAGCTTGTCAAGGAAAGATCAAAAACG
TCAAATGGACAAACTTTTTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061949-exon-scaffold_361-1491911889:1627891..1628021 | TCONS_00061949-exon-scaffold_361-1491911889:1627891..1628021 | Clytia hemisphaerica | exon |
| TCONS_00061949-exon-scaffold_361-1510915933:1627891..1628021 | TCONS_00061949-exon-scaffold_361-1510915933:1627891..1628021 | Clytia hemisphaerica | exon |
| TCONS_00061949-exon-scaffold_361-1575043694:1627891..1628021 | TCONS_00061949-exon-scaffold_361-1575043694:1627891..1628021 | Clytia hemisphaerica | exon |
| TCONS_00061949-exon-scaffold_361-1491911889:1628483..1628534 | TCONS_00061949-exon-scaffold_361-1491911889:1628483..1628534 | Clytia hemisphaerica | exon |
| TCONS_00061949-exon-scaffold_361-1510915933:1628483..1628534 | TCONS_00061949-exon-scaffold_361-1510915933:1628483..1628534 | Clytia hemisphaerica | exon |
| TCONS_00061949-exon-scaffold_361-1575043694:1628483..1628534 | TCONS_00061949-exon-scaffold_361-1575043694:1628483..1628534 | Clytia hemisphaerica | exon |
| TCONS_00061949-exon-scaffold_361-1491911889:1629074..1629834 | TCONS_00061949-exon-scaffold_361-1491911889:1629074..1629834 | Clytia hemisphaerica | exon |
| TCONS_00061949-exon-scaffold_361-1510915933:1629074..1629834 | TCONS_00061949-exon-scaffold_361-1510915933:1629074..1629834 | Clytia hemisphaerica | exon |
| TCONS_00061949-exon-scaffold_361-1575043694:1629074..1629834 | TCONS_00061949-exon-scaffold_361-1575043694:1629074..1629834 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:1627891..1629834 + |
Blast
The following BLAST results are available for this feature:
|
