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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061948 ID=TCONS_00061948|Name=TCONS_00061948|organism=Clytia hemisphaerica|type=transcript|length=835bp
aaaattcACATTGGGCCAGCCGGTGCCACCGAACAACCATGGGAAGGAGG
CCATCATTCTGGTTGGTGAACAAGAAGAGACATTAACTGCAAACAATTTG
AAGTTGACGCTTCCCATCCTTTCAACAGAGTGGTCCCTAGAACTCTCATT
CAAATTATCACCAACGCCTGGCGGTAACTGGTGCAATATTCTCCATTTTA
CACAAAACGGCAATCAAGGTAGTGTAGGGGATCGAATTCCTGCCGTCTAT
TGGAGAACCTCGACTAAATCTTTCACAGTGTCACTTTCCATGAATGGAAA
TGTCAAAGAGGTTTTCAACCCCATACCAGACTTGGTTGTCGATCAAACAT
ACAATATGGAGCTTCACCATCGATACGCGAGTGGAGgtgtttacaaattt
tcaatttttgtaaatgGTGAGATGACAGACACACAAGAAAACACTCAAGC
ACGGCAACTTTATGATGTGAAAGCATATATTGGTGGGCCCTTCTCTCTAG
CTTGTCAAGGAAAGATCAAAAACGTCAAATGGACAAACTTTTTATAATAA
TGTAACTTTTCTAAACACGCAATTGTAAAGAAATGTTatattttggctaa
aatttaTAACATTGTGACGCAATAAAAGTACATTTTCCCTTTCTCTTGTC
AAAATGTAGCGAACTACAAGCACTCTCgggaaaaaatatataattataTG
TAGTTACGGCATTTGTATATTAGCATGTATTATTACGGATTTTACTGTCC
TCTTGTAATCTTTTGAATTAACTTTTAGTTGTGACTGCAGCCAGATAAAG
TCTGTATGTAAAGCTATTTGTATAACTTTCCGTCA Run BLAST on NCBI transcript from alignment at scaffold_361:1627386..1629834+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061948 ID=TCONS_00061948|Name=TCONS_00061948|organism=Clytia hemisphaerica|type=transcript|length=2449bp|location=Sequence derived from alignment at scaffold_361:1627386..1629834+ (Clytia hemisphaerica)
aaaattcACATTGGGCCAGCCGGTAAGCTTTTGcacttttcagtttttct
ttttgtggaCTTCAGTTGGCTCAACTCTGCTAGGTTTTACATCCGCCCTT
TTGCCACAGGCTTATCACTTCTTTATCAGTGGCCACTTAGGTTAGGATAG
TTTTTTCTTAATTATgtttatttctgattttcattttctaggGGGTTTCT
AAAATTCAATCAATTAAAGTTAGATCAATTCATTTATAAAGACTTATTGT
Catctaatttcaatttttacttcaattttgtcaatcaaatatttattagt
cttcatttattttcattcagtttgaAGGCTAAATACATTCACATCGCAGT
CAAATTCATTGTCTGTTTCAAACCTGTCAAGTGTGCTGCACTGAGACTAT
ATGCGGTGGCAATGAATAATTCATCATTGAAAAGCTCATATTGTTTTGCT
accaaaatagtaaaaataatttgtcaaaATGCGATGATGAATAATTTACt
aatatgaaaaattgaatttttgaagatttatgGATATTTATAAATCAGAA
AGTTTTGTTGAAATTTCGAAATGGTTCTCCAATTTTCGTTTATATGCTTG
ATCGTTTTCAGTGGAGGATCTGCTGAAATTCTTGGTGTAAGTGGATATTA
TTGTTGATTTTACATAACCACTGGTAGAGGATGAGTCAGGGGCGCGGCCG
AGCGGTAAAGCGTTTGTCTCTTGACAGGAAGGTTGTCGTGCAAACGAATC
GACTTAAAGGGGCATATAAAAggagtaaaatgtaaacattgcgcgataTA
AAACAAtcgaaacaatcaaaatcagccatatttgttttgattttgtatcc
cgctgcatacggtttgtttacaaatttcgtcagtacttttatgtctcTTT
AATATAATTTGCAGTGAAGACAAAATAACTGTAtatattttgatagaatt
tgaattagataACGGTTTTTtactcgttgaaaagatatctAGGAGTTTAA
TCAAATAGAAAAACCACACAATGGAACTTTTTCGTCTACGCTGCAAATTA
TGTTGATATGAACTCTACATTTGACATTCTGATTTGTTTCGCTTTAGGTG
CCACCGAACAACCATGGGAAGGAGGCCATCATTCTGGTTGGTGAACAAGG
TACGGAAATATGTATGACTTCTCCGGGGGTGCTCGATTTAAAAAGTGCCG
TTTATGTGGATAAGAAATAGCGTCTCAAAGTTATTAAGTTACAGTACAAA
GACAacataccttattacacgaatattactagtcattttattaacacgaa
ttgaaaaacttcgtgttaataaaaacccccttaattaaaataAGCtatgg
tgtccttgaaaaagcaataaaattcttgttattttttggtgtgttaattt
caaggccatTAAATACTTCCATACTTATATTCGTGTAAGAAGGTAGTCAA
ATTTGAGTCAATAAGGGCTGGCGTCCAAAGACGGATACAGTACATTATGA
TATTGTCAAATTTTCCTAATTCAAACCTCTATATTACtggaatctttctg
taattcgaagagAATTTTGTTCCCTTGAGGATCGAATTAGAGGATAAATG
TCAAAGCAAAGTAAGACGTTCAGACAGAAAGATTTAATAAACTCTGAGTC
TGGATGAATACTTTTCACTATACATCTTTCGTTTTCAGAAGAGACATTAA
CTGCAAACAATTTGAAGTTGACGCTTCCCATCCTTTCAACAGAGTGGTCC
CTAGAACTCTCATTCAAATTATCACCAACGCCTGGCGGTAACTGGTGCAA
TATTCTCCATTTTACACAAAACGGCAATCAAGGTAGTGTAGGGGATCGAA
TTCCTGCCGTCTATTGGAGAACCTCGACTAAATCTTTCACAGTGTCACTT
TCCATGAATGGAAATGTCAAAGAGGTTTTCAACCCCATACCAGACTTGGT
TGTCGATCAAACATACAATATGGAGCTTCACCATCGATACGCGAGTGGAG
gtgtttacaaattttcaatttttgtaaatgGTGAGATGACAGACACACAA
GAAAACACTCAAGCACGGCAACTTTATGATGTGAAAGCATATATTGGTGG
GCCCTTCTCTCTAGCTTGTCAAGGAAAGATCAAAAACGTCAAATGGACAA
ACTTTTTATAATAATGTAACTTTTCTAAACACGCAATTGTAAAGAAATGT
TatattttggctaaaatttaTAACATTGTGACGCAATAAAAGTACATTTT
CCCTTTCTCTTGTCAAAATGTAGCGAACTACAAGCACTCTCgggaaaaaa
tatataattataTGTAGTTACGGCATTTGTATATTAGCATGTATTATTAC
GGATTTTACTGTCCTCTTGTAATCTTTTGAATTAACTTTTAGTTGTGACT
GCAGCCAGATAAAGTCTGTATGTAAAGCTATTTGTATAACTTTCCGTCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061948-exon-scaffold_361-1491911889:1627386..1627407 | TCONS_00061948-exon-scaffold_361-1491911889:1627386..1627407 | Clytia hemisphaerica | exon |
| TCONS_00061948-exon-scaffold_361-1510915933:1627386..1627407 | TCONS_00061948-exon-scaffold_361-1510915933:1627386..1627407 | Clytia hemisphaerica | exon |
| TCONS_00061948-exon-scaffold_361-1575043694:1627386..1627407 | TCONS_00061948-exon-scaffold_361-1575043694:1627386..1627407 | Clytia hemisphaerica | exon |
| TCONS_00061948-exon-scaffold_361-1491911889:1628483..1628534 | TCONS_00061948-exon-scaffold_361-1491911889:1628483..1628534 | Clytia hemisphaerica | exon |
| TCONS_00061948-exon-scaffold_361-1510915933:1628483..1628534 | TCONS_00061948-exon-scaffold_361-1510915933:1628483..1628534 | Clytia hemisphaerica | exon |
| TCONS_00061948-exon-scaffold_361-1575043694:1628483..1628534 | TCONS_00061948-exon-scaffold_361-1575043694:1628483..1628534 | Clytia hemisphaerica | exon |
| TCONS_00061948-exon-scaffold_361-1491911889:1629074..1629834 | TCONS_00061948-exon-scaffold_361-1491911889:1629074..1629834 | Clytia hemisphaerica | exon |
| TCONS_00061948-exon-scaffold_361-1510915933:1629074..1629834 | TCONS_00061948-exon-scaffold_361-1510915933:1629074..1629834 | Clytia hemisphaerica | exon |
| TCONS_00061948-exon-scaffold_361-1575043694:1629074..1629834 | TCONS_00061948-exon-scaffold_361-1575043694:1629074..1629834 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:1627386..1629834 + |
Blast
The following BLAST results are available for this feature:
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