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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061942 ID=TCONS_00061942|Name=TCONS_00061942|organism=Clytia hemisphaerica|type=transcript|length=1996bp
CTATATTGAGCTCCAATGAATGGGATATAATAAATCCAATCCACATTTAC
TTCATCAACTTTGGAGTAATTTCCCGAACATCTCTTAATtcacacttttt
tcttcagttgtAAGAGACTTTTCTGTTCTGTAAATTAAACGTGGAAAAGa
tttcaatttctgaaaattgacgtcaaataatattttcaccAAGACTTGAA
CCATTTAAGAGTTTAGAGCGGAAGAGAGAAGTCATGGTTCTTTAGTTCAG
CAAATATGAAGAAACTAAAAAGCcattttagtaaatttttcaGTGTCATT
TTTTGCTGCTTTTTGAAAAAGAGTGACGAAGACGCTCCAGAAGCTGGTAa
gcctttaaatatttttctttcattgttttttcattattttagacgttatt
taaataaagctttttatcTAACTACCTTCTATGTCTAATTACCCTCCCTC
AGATAGAACCGCACCATAGAGAGTGGCGCCATTAGAATATAACGTCATAC
CTTTTAGCTTCTACCGTGGctgggtagctcagtcggtagagcaagCGCCT
TACAATCCAAGGGTTGTGAGTTCGATcgccggtcaccgccaactcagcgg
atgagtagatTAGATTGGGCTATCTGATCTAGGtcgtaagttactgggag
ctgagagtagatGTGGTGCTCCACCTCCCTCGTTCCCGGCTctgccgaca
gccaccagatgaatatacttacacTTATTTAACCATaatttgcaatattt
tctttagattttggTGATGGGAAAGcagcaaaaaaagtttcctcTGTGAT
TGAAGCAGAGGAAGCAGcaaagaaagaaaatacttttgttcagcgaaaaa
atgaaaaggaatATTTGAGGCTTAAAGatatatTTAGAAATTACGGATAT
GAAAAACTAACCGAGATGAGGGACACCCTTCAAAAGATGCTTATGAAGCa
aaagtttatgaaaaatgtcgaTCAAAGTCGCCAAGACTTTGAGATGGATA
ATTACGAGATAAAACGGTTTTTTGGCCGTGCTGGAGGGCTGAGACGAAAT
CTCATTGATATGGATGATTACGAAATAAAGCGATTTTTCGGTCGTGCCGA
GGGCCTAAAACGAAGAAAAGCTTATTTCTCAGATCCCTTCAATATGTGGC
AAGTTAAGAAAGTTGAAAAGCAGGACCTTTGGGAATTCTTTATGTTGACG
GGTAAACTTCCATGGGAATGTTTGGACGAAATTGGATGGGACTACGATAC
GGTTGAGTCAATGAGAATTGAGACACTGTTTCCCATCCAGGAGAAGGAAT
TCGAGGACGAAGTAAACCACGACGATTTTTTTGATGAGAATTACGAAAGT
GAATATTCGTATTACACTGATAGTGAATCGGAATATGAAACAAACNGATT
TTTGTGATGAGAATTACGAAAGTGAATATTCGTATTACACTGATAGTGAA
TCGGAATATGAAACAAACGCCGAGATCGaaactgaaagtgaaagtggcgT
CGAAGGGAACAATGTTGAAGAGGATGGCGAAAGTGAAGATGAAGGACGGN
GCGTCGAAGAGAACAATGTTGAAGAGGATAGCGAAAGTGAAGATGAAGGA
CGTCGCGATCCGCATGCAGTTTTGTTGCGCCTCTTTCCACCCTCTCAACC
CGACCCTGAATGGGTAGAGCGGTACGGCCACATCGCCGCAGGAGCTTATG
CCAGTGACAGCGAAGAGGAGGAAAGCGAAGAATCGGAGGAGGAAAGCGAA
GACGAGGTGAGTGAATACGAACTTGATGACGAGAGTGAAGACGAAGAAGA
TGGAGATGTTTTCAACCCGTTCGCTCACGAACTCTAAATATCTTCTTTAT
AATATACAGATTGTTTTAAAGGAAATACATTGCGCAAAATAAATCAATAC
AGAAACTGGATATTTTATACAGGGTTTCGATGGCAAAATCATGagatttt
taggtttaaatttTTGCTCATCACTCTTTGGTCAAAACTCCTAATA Run BLAST on NCBI transcript from alignment at scaffold_361:1457445..1460011+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061942 ID=TCONS_00061942|Name=TCONS_00061942|organism=Clytia hemisphaerica|type=transcript|length=2567bp|location=Sequence derived from alignment at scaffold_361:1457445..1460011+ (Clytia hemisphaerica)
CTATATTGAGCTCCAATGAATGGGATATAATAAATCCAATCCACATTTAC
TTCATCAACTTTGGAGTAATTTCCCGAACATCTCTTAATtcacacttttt
tcttcagttgtAAGAGACTTTTCTGTTCTGTAAATTAAACGTGGAAAAGa
tttcaatttctgaaaattgacgtcaaataatattttcaccAAGACTTGAA
CCATTTAAGAGTTTAGAGCGGAAGAGAGAAGTCATGGTTCTTTAGTTCAG
CAAATATGAAGAAACTAAAAAGCcattttagtaaatttttcaGTGTCATT
TTTTGCTGCTTTTTGAAAAAGAGTGACGAAGACGCTCCAGAAGCTGGTAa
gcctttaaatatttttctttcattgttttttcattattttagacgttatt
taaataaagctttttatcTAACTACCTTCTATGTCTAATTACCCTCCCTC
AGATAGAACCGCACCATAGAGAGTGGCGCCATTAGAATATAACGTCATAC
CTTTTAGCTTCTACCGTGGctgggtagctcagtcggtagagcaagCGCCT
TACAATCCAAGGGTTGTGAGTTCGATcgccggtcaccgccaactcagcgg
atgagtagatTAGATTGGGCTATCTGATCTAGGtcgtaagttactgggag
ctgagagtagatGTGGTGCTCCACCTCCCTCGTTCCCGGCTctgccgaca
gccaccagatgaatatacttacacTTATTTAACCATaatttgcaatattt
tctttagattttggTGATGGGAAAGcagcaaaaaaagtttcctcTGTGAT
TGAAGCAGAGGAAGCAGcaaagaaagaaaatacttttgttcagcgaaaaa
atgaaaaggaatATTTGAGGCTTAAAGGtttgttgactttttttttttgg
tgaacCATAAATTTTTACAGTtcaaaaaacttattttgagtgcaacccTG
TTAGTGTTTCACTTCTCTTGGAAATCCAAActatttcaataaaaagtttT
CACCTCTACTTCATGGAACGCATGGAACGCAAggaaatcaaacaaaatat
tttgcattgtCCGAGCGCTAACGCTTTTCCAcactattttttctttttta
gatatatTTAGAAATTACGGATATGAAAAACTAACCGAGATGAGGGACAC
CCTTCAAAAGATGCTTATGAAGCaaaagtttatgaaaaatgtcgaTCAAA
GTCGCCAAGACTTTGAGATGGATAATTACGAGATAAAACGGTTTTTTGGC
CGTGCTGGAGGGCTGAGACGAAATCTCATTGATATGGATGATTACGAAAT
AAAGCGATTTTTCGGTCGTGCCGAGGGCCTAAAACGAAGAAAAGGTGAGG
AAAAagaaacatgtttttttcttttataagcattacatttataagaatat
ttagaCTCATGGAAAGATTTAAGCGTGTGCTAAATATTACATTTAAGAGC
TcacgaaaaattaattttcctgttcttttttgtttttggctaGGATTTTA
CGGATTTTTCGGATTTTAggaatttccctaaaattttgcacggGATATAA
GCTTCCATGCTGTCGGTTATTTCAAGGGTGGAACAATAAAAAGATGTCCC
CGAAGGAGTACTCAATTTCTCTCAAATAGTAATGAACAATGCTTAAATCA
AGAATTTACCAATTCTGATCTTTCTCGCTCTTTTTATTTAGCTTATTTCT
CAGATCCCTTCAATATGTGGCAAGTTAAGAAAGTTGAAAAGCAGGACCTT
TGGGAATTCTTTATGTTGACGGGTAAACTTCCATGGGAATGTTTGGACGA
AATTGGATGGGACTACGATACGGTTGAGTCAATGAGAATTGAGACACTGT
TTCCCATCCAGGAGAAGGAATTCGAGGACGAAGTAAACCACGACGATTTT
TTTGATGAGAATTACGAAAGTGAATATTCGTATTACACTGATAGTGAATC
GGAATATGAAACAAACNGATTTTTGTGATGAGAATTACGAAAGTGAATAT
TCGTATTACACTGATAGTGAATCGGAATATGAAACAAACGCCGAGATCGa
aactgaaagtgaaagtggcgTCGAAGGGAACAATGTTGAAGAGGATGGCG
AAAGTGAAGATGAAGGACGGNGCGTCGAAGAGAACAATGTTGAAGAGGAT
AGCGAAAGTGAAGATGAAGGACGTCGCGATCCGCATGCAGTTTTGTTGCG
CCTCTTTCCACCCTCTCAACCCGACCCTGAATGGGTAGAGCGGTACGGCC
ACATCGCCGCAGGAGCTTATGCCAGTGACAGCGAAGAGGAGGAAAGCGAA
GAATCGGAGGAGGAAAGCGAAGACGAGGTGAGTGAATACGAACTTGATGA
CGAGAGTGAAGACGAAGAAGATGGAGATGTTTTCAACCCGTTCGCTCACG
AACTCTAAATATCTTCTTTATAATATACAGATTGTTTTAAAGGAAATACA
TTGCGCAAAATAAATCAATACAGAAACTGGATATTTTATACAGGGTTTCG
ATGGCAAAATCATGagatttttaggtttaaatttTTGCTCATCACTCTTT
GGTCAAAACTCCTAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061942-exon-scaffold_361-1491911889:1457445..1458321 | TCONS_00061942-exon-scaffold_361-1491911889:1457445..1458321 | Clytia hemisphaerica | exon |
| TCONS_00061942-exon-scaffold_361-1510915933:1457445..1458321 | TCONS_00061942-exon-scaffold_361-1510915933:1457445..1458321 | Clytia hemisphaerica | exon |
| TCONS_00061942-exon-scaffold_361-1575043694:1457445..1458321 | TCONS_00061942-exon-scaffold_361-1575043694:1457445..1458321 | Clytia hemisphaerica | exon |
| TCONS_00061942-exon-scaffold_361-1491911889:1458546..1458788 | TCONS_00061942-exon-scaffold_361-1491911889:1458546..1458788 | Clytia hemisphaerica | exon |
| TCONS_00061942-exon-scaffold_361-1510915933:1458546..1458788 | TCONS_00061942-exon-scaffold_361-1510915933:1458546..1458788 | Clytia hemisphaerica | exon |
| TCONS_00061942-exon-scaffold_361-1575043694:1458546..1458788 | TCONS_00061942-exon-scaffold_361-1575043694:1458546..1458788 | Clytia hemisphaerica | exon |
| TCONS_00061942-exon-scaffold_361-1491911889:1459136..1460011 | TCONS_00061942-exon-scaffold_361-1491911889:1459136..1460011 | Clytia hemisphaerica | exon |
| TCONS_00061942-exon-scaffold_361-1510915933:1459136..1460011 | TCONS_00061942-exon-scaffold_361-1510915933:1459136..1460011 | Clytia hemisphaerica | exon |
| TCONS_00061942-exon-scaffold_361-1575043694:1459136..1460011 | TCONS_00061942-exon-scaffold_361-1575043694:1459136..1460011 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:1457445..1460011 + |
Blast
The following BLAST results are available for this feature:
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