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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061940 ID=TCONS_00061940|Name=TCONS_00061940|organism=Clytia hemisphaerica|type=transcript|length=2130bp
CTCACTAAAAATGCACGATTATGAGCATGAAAATCTCCTTATATTTTTGG
ACGTAGGGTGTAGGGCGAGGATGGTTGTAAAAACATAcatctcctgtttt
tctttgtaCCTCCATGATTGGATGTTATTATGCTATTCCTTCCAGAAGTC
TGTAAAGGAACTTCTCAATAGATGACAGTAATTAAATCGCTTCTTTCAGT
TTCCTTTTCGTTTGTTTTCAATGTAGACACGATAATCCTGAACAAATCAG
AATTCTTGCCATCAATCAAACCTGGAGAAGTACCTTGCCGATCTGTTTCT
CTTGTTTTGACGTAAAGAGGAATTGATTTCCTCCttctttcaaaatgtga
aatagttggaaacaaaaaatcttgttttttcaCTATTCATTCTCTATCCT
TTTTGTTTCTGGTTAGTTTTCCATTTCAAAGTGAAAATCAGTTAATTATC
CCCACTACAATTTTTGAAATGCGATGCAATAGTCTACCACAGGAGTCACT
TGGGTCATGCGTTTTGCATCAGAAATGAGGGGCATCGTGAACTTATAAtc
gactggacgtctatcttctattgtgtctttgaagcgagcttcgttaccgc
ctgtatttcaaaattggtataaaaattgacctttttctttatcagtattt
catgctctttcgaatgaaacaaacaattttcaattttgacgactatttat
tttggttgccatagtaaccaatgacgtcagtttccatggcaacgggaGCA
agagattcctctctagccttTCCATAGGCTGTGCGCATCCCTAGAATAGG
TTATGATATAGGAGATGCGTAtcatgtataaaattcccgtcccaAAATTG
TTGAACACCCGTCTGTTACAGAGTTACCTTAAATTTGGGGTAACTTGTTT
CAATCTTcagaaatccaatgattgtattaacctctagccattcaaatttt
taattaaaattgaatgaaatttgaaaatctcaaaaacaaaaagacgCCCC
CgtgacgggaattttatacacgatacgcagCCATAGGGGCTaaaaaacat
atcagaggggatgtatGTAGCCTAGCCTTCCCGACGCATGCCCTTTTTTA
TCAAATCCATGTATCATTATGCTTATGTGTAGTTCGTCTAGTAAGATATA
AGACAATGGACCCAGCGGTCAAACCATCCGCAACTTGTGTTTGAAGTTGA
AGCTGAAACAGGAGGTACCAATCACGGTTTGTTCGTTCGACCTCCAGTGA
TGAAGAAACCAATCATTATCCTCGGTGCTGACGTCACTCATTCAGCGCCC
AGCGAGTCCAAGAAGCCTTCCATTGAAGCTATGGTGGGATCGTGCAACCC
CGAAGCATCGGAATATTTCTGTGAAGTTCGCGTTCAAAAAACAAGTCAAG
GTAATGGAGGAGATCGAAAAGACAGAGGAGATGATCAAAAGTCTCCTTTA
ACGATTCCACGAGAAGACGCGCGTCAAACCGTTGAAGATCATCTATTATC
GAGACGGTTTCAGTGAAGGACAGTTCGTTCAAGTCATCTTCTTCATTGCA
CAGGAACGTTGCAACACACGATTGTTCCCTTCAGACCCAAAAGATAGTTT
CGGCAAAGCGAGGAACGTACCTTCTGAAACAGTCATCGATCACTCATCCC
ACCAAACCTGACGTCTTCTTGGCATCTCATGAGGGACTCCAGGTAGGACC
ttcattattttctttataGTTTGTTTGGTACCGCCAAACCAACGCACTAC
CATTTGCTTTGGGACGATAGCAACTTCTCCAATGACGAACTTCAAAGTTT
GACCTAGAACCTATGTCATCTTTGCTCTCACTGTGAACGAAGCGTTAGTT
ACCCAACACCAACATATTATGCGCATTTGGCCACCGCCCGTGCTCGCGAA
CATCACAATGCTATGTTGCTTCGCAACCGAAATCGTATTAACTTTATTCC
AAAGGAGGActtgagaaaaatcaaaaaatgcaCTAAATCTAATAAGAAAg
ccaattttattttatcttaaatttttttatcaatttcacGAGTTTGACTT
TCTCAATCATAAAATATAGGAGCAGTCTCGACCATTTTCAGTCCCCAAAA
TTTGCGGAGCATAATCGTTTTGAATCGACA Run BLAST on NCBI transcript from alignment at scaffold_361:1454244..1456470+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061940 ID=TCONS_00061940|Name=TCONS_00061940|organism=Clytia hemisphaerica|type=transcript|length=2227bp|location=Sequence derived from alignment at scaffold_361:1454244..1456470+ (Clytia hemisphaerica)
CTCACTAAAAATGCACGATTATGAGCATGAAAATCTCCTTATATTTTTGG
ACGTAGGGTGTAGGGCGAGGATGGTTGTAAAAACATAcatctcctgtttt
tctttgtaCCTCCATGATTGGATGTTATTATGCTATTCCTTCCAGAAGTC
TGTAAAGGAACTTCTCAATAGATGACAGTAATTAAATCGCTTCTTTCAGT
TTCCTTTTCGTTTGTTTTCAATGTAGACACGATAATCCTGAACAAATCAG
AATTCTTGCCATCAATCAAACCTGGAGAAGTACCTTGCCGATCTGTTTCT
CTTGTTTTGACGTAAAGAGGAATTGATTTCCTCCttctttcaaaatgtga
aatagttggaaacaaaaaatcttgttttttcaCTATTCATTCTCTATCCT
TTTTGTTTCTGGTTAGTTTTCCATTTCAAAGTGAAAATCAGTTAATTATC
CCCACTACAATTTTTGAAATGCGATGCAATAGTCTACCACAGGAGTCACT
TGGGTCATGCGTTTTGCATCAGAAATGAGGGGCATCGTGAACTTATAAtc
gactggacgtctatcttctattgtgtctttgaagcgagcttcgttaccgc
ctgtatttcaaaattggtataaaaattgacctttttctttatcagtattt
catgctctttcgaatgaaacaaacaattttcaattttgacgactatttat
tttggttgccatagtaaccaatgacgtcagtttccatggcaacgggaGCA
agagattcctctctagccttTCCATAGGCTGTGCGCATCCCTAGAATAGG
TTATGATATAGGAGATGCGTAtcatgtataaaattcccgtcccaAAATTG
TTGAACACCCGTCTGTTACAGAGTTACCTTAAATTTGGGGTAACTTGTTT
CAATCTTcagaaatccaatgattgtattaacctctagccattcaaatttt
taattaaaattgaatgaaatttgaaaatctcaaaaacaaaaagacgCCCC
CgtgacgggaattttatacacgatacgcagCCATAGGGGCTaaaaaacat
atcagaggggatgtatGTAGCCTAGCCTTCCCGACGCATGCCCTTTTTTA
TCAAATCCATGTATCATTATGCTTATGTGTAGTTCGTCTAGTAAGATATA
AGACAATGGACCCAGCGGTCAAACCATCCGCAACTTGTGTTTGAAGTTGA
AGCTGAAACAGGAGGTACCAATCACGGTTTGTTCGTTCGACCTCCAGTGA
TGAAGAAACCAATCATTATCCTCGGTGCTGACGTCACTCATTCAGCGCCC
AGCGAGTCCAAGAAGCCTTCCATTGAAGCTATGGTGGGATCGTGCAACCC
CGAAGCATCGGAATATTTCTGTGAAGTTCGCGTTCAAAAAACAAGTCAAG
GTAATGGAGGAGATCGAAAAGACAGAGGAGATGATCAAAAGTCTCCTTTA
ACGATTCCACGAGAAGACGCGCGTCAAACCGTTGAAGATCATCTATTATC
GAGACGGTTTCAGTGAAGGACAGTTCGTTCAAGTCATCTTCTTCATTGCA
CAGGAACGTTGCAACACACGATTGTTCCCTTCAGACCCAAAAGATAGTTT
CGGCAAAGCGAGGAACGTACCTTCTGAAACAGTCATCGATCACTCATCCC
ACCAAACCTGACGTCTTCTTGGCATCTCATGAGGGACTCCAGGTAGGACC
ttcattattttctttataGTTTGTTTGTAAGCATTATGATTGATCTCCAA
CCATccaaggtttttttttcatttgaaagacATTTTTCGCAGATCGGCAT
TTTCTTTCTATTTGTATTTTAAGGGTACCGCCAAACCAACGCACTACCAT
TTGCTTTGGGACGATAGCAACTTCTCCAATGACGAACTTCAAAGTTTGAC
CTAGAACCTATGTCATCTTTGCTCTCACTGTGAACGAAGCGTTAGTTACC
CAACACCAACATATTATGCGCATTTGGCCACCGCCCGTGCTCGCGAACAT
CACAATGCTATGTTGCTTCGCAACCGAAATCGTATTAACTTTATTCCAAA
GGAGGActtgagaaaaatcaaaaaatgcaCTAAATCTAATAAGAAAgcca
attttattttatcttaaatttttttatcaatttcacGAGTTTGACTTTCT
CAATCATAAAATATAGGAGCAGTCTCGACCATTTTCAGTCCCCAAAATTT
GCGGAGCATAATCGTTTTGAATCGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061940-exon-scaffold_361-1491911889:1454244..1455969 | TCONS_00061940-exon-scaffold_361-1491911889:1454244..1455969 | Clytia hemisphaerica | exon |
| TCONS_00061940-exon-scaffold_361-1510915933:1454244..1455969 | TCONS_00061940-exon-scaffold_361-1510915933:1454244..1455969 | Clytia hemisphaerica | exon |
| TCONS_00061940-exon-scaffold_361-1575043694:1454244..1455969 | TCONS_00061940-exon-scaffold_361-1575043694:1454244..1455969 | Clytia hemisphaerica | exon |
| TCONS_00061940-exon-scaffold_361-1491911889:1456067..1456470 | TCONS_00061940-exon-scaffold_361-1491911889:1456067..1456470 | Clytia hemisphaerica | exon |
| TCONS_00061940-exon-scaffold_361-1510915933:1456067..1456470 | TCONS_00061940-exon-scaffold_361-1510915933:1456067..1456470 | Clytia hemisphaerica | exon |
| TCONS_00061940-exon-scaffold_361-1575043694:1456067..1456470 | TCONS_00061940-exon-scaffold_361-1575043694:1456067..1456470 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:1454244..1456470 + |
Blast
BLAST of TCONS_00061940 vs. Swiss-Prot (Human)
Match: AGO2 (Protein argonaute-2 OS=Homo sapiens GN=AGO2 PE=1 SV=3) HSP 1 Score: 83.9593 bits (206), Expect = 8.678e-45 Identity = 37/59 (62.71%), Postives = 43/59 (72.88%), Query Frame = 2
Query: 1727 GTAKPTHYHLLWDDSNFSNDELQSLT*NLCHLCSHCERSVSYPTPTYYAHLATARAREH 1903
GT++P+HYH+LWDD+ FS+DELQ LT LCH C RSVS P P YYAHL RAR H
Sbjct: 758 GTSRPSHYHVLWDDNRFSSDELQILTYQLCHTYVRCTRSVSIPAPAYYAHLVAFRARYH 816 HSP 2 Score: 64.6994 bits (156), Expect = 8.678e-45 Identity = 32/71 (45.07%), Postives = 44/71 (61.97%), Query Frame = 2
Query: 1184 LVFEVEAETGGTNHGLF--VRPPVMKKPIIILGADVTHSAPSESKKPSIEAMVGSCNPEASEYFCEVRVQK 1390
L ++ + GG N+ L RPPV ++P+I LGADVTH + KKPSI A+VGS + + Y VRVQ+
Sbjct: 563 LCLKINVKLGGVNNILLPQGRPPVFQQPVIFLGADVTHPPAGDGKKPSIAAVVGSMDAHPNRYCATVRVQQ 633 HSP 3 Score: 63.929 bits (154), Expect = 8.678e-45 Identity = 34/91 (37.36%), Postives = 50/91 (54.95%), Query Frame = 3
Query: 1437 KSLL*RFHEKTRVKPLKIIYYRDGFSEGQFVQVI-----------------------FFIAQERCNTRLFPSDPKDSFGKARNVPSETVID 1640
+ LL +F++ TR KP +II+YRDG SEGQF QV+ F + Q+R +TRLF +D + GK+ N+P+ T +D
Sbjct: 647 RELLIQFYKSTRFKPTRIIFYRDGVSEGQFQQVLHHELLAIREACIKLEKDYQPGITFIVVQKRHHTRLFCTDKNERVGKSGNIPAGTTVD 737 HSP 4 Score: 28.4906 bits (62), Expect = 8.678e-45 Identity = 11/20 (55.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query: 1633 SSITHPTKPDVFLASHEGLQ 1692
+ ITHPT+ D +L SH G+Q
Sbjct: 738 TKITHPTEFDFYLCSHAGIQ 757
The following BLAST results are available for this feature:
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