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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061935 ID=TCONS_00061935|Name=TCONS_00061935|organism=Clytia hemisphaerica|type=transcript|length=3436bpRun BLAST on NCBI transcript from alignment at scaffold_361:1404424..1412299+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061935 ID=TCONS_00061935|Name=TCONS_00061935|organism=Clytia hemisphaerica|type=transcript|length=7876bp|location=Sequence derived from alignment at scaffold_361:1404424..1412299+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00061935 vs. Swiss-Prot (Human)
Match: SEM5B (Semaphorin-5B OS=Homo sapiens GN=SEMA5B PE=2 SV=4) HSP 1 Score: 235.343 bits (599), Expect = 2.917e-63 Identity = 190/719 (26.43%), Postives = 304/719 (42.28%), Query Frame = 3
Query: 174 VCIPAKHRKFTKEDLKKDFNTKEISKSAAFQSIVTNEKTNKLYTGGRNSITVLDGTNLNNISHISWKV--DNER-CLSEGLVPKEYCNNHVTLINLYKDKIVACGTGSTRPVYRVFSQDSLNVTREG-NRLCASP-NPEHRVIGQITSLGEMIVATYKDQKGRDSEVH---GSFMPEKLPVYRAKLKTGADDVKPSADFIKSFYIGNSVYKFFIEEAEEN--GNQQTPTVGRFCQTDNGGPSFISNRLWTTFRKARLNCFYNRADNKMVFRHLVDVDYDATKKIFYAIYTMTKHESLASAICTFKFEDLQEAFSGNFLAKNENNKEWNEIQNPKIFYGCKVNRTKLSSSINPTSPGKEPT-NSLNLESSMFVSSHRIMAKTISTQPDIFQYMKPVTRFSKIAIDQFSGENKAQETLLNII---DDQGNIFTLHANLGNTKESCIIEEI---ATGMENP-KLFQMNHKERMLYITTSDGSRLMTYNVDSCARYNGKSDCISAHNPRCGWSMQTSQCLSVRSSGNETLL-QDLNKCP----NRLDIFSAWSSWKAQEQ-EGGQEKYCLVRHRQCHS----CDLKLCDVASTEVINCTANAVTDIDRWLKEGAIDGSWSTWQEWSECGNHVKCGNDTKIRYRQCGSPKPANGGRECIGRDFECTTCPKKKEI-INIIWTQWSKWSNCPDK-SVKYETRARTCSKPGQCNGKDTEKRDCPEEG 2240
+C +KH EDL+ + + F + + N+L G RN + L N++ + W D R C S+G +E C N+V ++ + K+ CGT + P+ +L+ T E N + P +P H I+S GE+ AT D GRD ++ GS P + Y +K +F+ ++ IG Y F E A E+ G V R C+ D GG F+ WTTF KARLNC + + L + + + Y ++T + ASA+C F + +AF+G F + W I NP + C ++ T P + T SL +F+ S + + ++ +P + Q RFS + +D +A++TL +++ + G I + + C +EE+ G P + ++ H R L++ DG ++ ++ CA Y + C+ A +P CGW + +C ++ S N +L Q++ CP R F WS W+ E +G CL R R C S C C + + NC+ N G+W+ W W+ C CG ++R R C +P P +GGR C+G+ E C + + I W W WS C ++R R C C G E + C EG
Sbjct: 97 LCALSKHPTVAFEDLQPWVSNFTYPGARDFSQLALDPSGNQLIVGARNYLFRLSLANVSLLQATEWASSEDTRRSCQSKGKT-EEECQNYVRVLIVAGRKVFMCGTNAFSPMCTSRQVGNLSRTIEKINGVARCPYDPRHNSTAVISSQGELYAATVIDFSGRDPAIYRSLGSGPPLRTAQYNSKWLN-------EPNFVAAYDIGLFAYFFLRENAVEHDCGRTVYSRVARVCKNDVGG-RFLLEDTWTTFMKARLNC-SRPGEVPFYYNELQSAFHLPEQDLIYGVFTTNVNSIAASAVCAFNLSAISQAFNGPFRYQENPRAAWLPIANPIPNFQC--------GTLPETGPNENLTERSLQDAQRLFLMSEAV--QPVTPEPCVTQDS---VRFSHLVVDLV----QAKDTLYHVLYIGTESGTILKALSTASRSLHGCYLEELHVLPPGRREPLRSLRILHSARALFVGLRDG--VLRVPLERCAAYRSQGACLGARDPYCGWDGKQQRCSTLEDSSNMSLWTQNITACPVRNVTRDGGFGPWSPWQPCEHLDGDNSGSCLCRARSCDSPRPRCGGLDCLGPAIHIANCSRN---------------GAWTPWSSWALCS--TSCGIGFQVRQRSCSNPAPRHGGRICVGKSREERFCNENTPCPVPIFWASWGSWSKCSSNCGGGMQSRRRACENGNSCLGCGVEFKTCNPEG 769 The following BLAST results are available for this feature:
BLAST of TCONS_00061935 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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