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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061929 ID=TCONS_00061929|Name=TCONS_00061929|organism=Clytia hemisphaerica|type=transcript|length=4375bpRun BLAST on NCBI protein sequence of TCONS_00061929-protein >TCONS_00061929-protein ID=TCONS_00061929-protein|Name=TCONS_00061929-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1077bp MSSEDLSNGTGVVNGGLEIDSMVPSSKIDGVPRFRISKTPAANDVTDMLDRun BLAST on NCBI transcript from alignment at scaffold_361:1325205..1335176+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061929 ID=TCONS_00061929|Name=TCONS_00061929|organism=Clytia hemisphaerica|type=transcript|length=9972bp|location=Sequence derived from alignment at scaffold_361:1325205..1335176+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_361:1325205..1335176+ >TCONS_00061929 ID=TCONS_00061929|Name=TCONS_00061929|organism=Clytia hemisphaerica|type=CDS|length=29106bp|location=Sequence derived from alignment at scaffold_361:1325205..1335176+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061929 vs. Swiss-Prot (Human)
Match: S12A2 (Solute carrier family 12 member 2 OS=Homo sapiens GN=SLC12A2 PE=1 SV=1) HSP 1 Score: 768.459 bits (1983), Expect = 0.000e+0 Identity = 474/1029 (46.06%), Postives = 641/1029 (62.29%), Query Frame = 1
Query: 463 THTNT---QTMGYLTHDAVPLSVFYRNQESMENIAGGK--RPTLDQLH---KGEGLEHAKKRHWDASKTVEPVKGISDIESTGENKKGAVKLGWIKGVLFPTLLNIWGVILFLRMPWIVANAGIGLSSVVVILATCVTTITALSMSAICTNGEVKGGGAYFLISRSLGPEXXXXXXXXXXXANAVAVALYLVGFGETVQALMGKDGIFMVDVKNDVRIIGLIALVLCFIITQVGLDWVIHTQXXXXXXXXXXXXXXXXXTAYPNPQSSRDTMEQYGLPGYSGELFKTNFGPDYENGVGFFDVFSIFFPAATGIMAGANLSGDLKNPSQAVPWGTLIAIVVTSAVYVLLCWLLGSSTMRFAQGPISLMASGXXXXXXXXXXXXXXXXXXXXXXXANVEDYEFGARNDLQIIERISLWGPLVLIGIFXXXXXXXXXXXXXXPKVFQAVSKDKIFPGIEIFAKGYGRSNEPRNGYFLTLIIAAGFIAIGELNVIAPIISNFFLMAYALINYAVFASSLSKSPGWRPAFKYYNMWISFIGFLLCMAIMFMINWWAALITLLAVAGLYKWVDVRKPDINWGSSGQAHTFLKALRFTRRLEEIEDHVKNFRIQCLCLTGQPSLRPNLVHFASHITKHLGMLVCGEVVI-----TDKISQTTQHNEAKWLKKHKVKAFHQIVQNTTLRGGVNSMLQTLGLGKLRPNTLLLGYMNCWQNADSSKVDEFYNMLHDAFDLKYGVGILRLQDGFDIT-----DGIVDDQIEN-GVVDNHEPDWYTE--DWDESQK-QQNPDNQQGSDNSSDPGKDGSRLKESELPNIVM------------AFDKKR-KGYIDVWWLYDDGGXXXXXXXXXXXXXXWRGCKLRIFTPASDKKIKANQIRMANLLKKFRIDFSSVVEFRGINKHPRDDSVTHFKRMRGGAHLPPDG----VLDK-------------------KTLRQIRLGELLHEHSSEAKLIVLTLPIPKKSVVTSLMYMSWLEVLSADLPPIMMVRGNQTSVLTFYS 3375
THTNT +T G+ T DAVP YR+ + G K RP+L +LH + E E +++ T + V + T E+K G VK GWIKGVL +LNIWGV+LF+R+ WIV AGIGLS +V+++AT VTTIT LS SAI TNG V+GGGAY+LISRSLGPEFGG+IG+IF+ ANAVAVA+Y+VGF ETV L+ + I M+D ND+RIIG I +V+ I+ G++W Q LL +L AI + GT P ++ + G GY E+F NFGPD+ FF VF+IFFPAATGI+AGAN+SGDL +P A+P GTL+AI++T+ VYV + +GS +R A G ++ T S + +G N+ Q++ +S + PL+ GIF+ATLSSALASLVSAPK+FQA+ KD I+P ++FAKGYG++NEP GY LT +IA GFI I ELNVIAPIISNFFL +YALIN++VF +SL+KSPGWRPAFKYYNMWIS +G +LC +MF+INWWAAL+T + V GLY +V +KPD+NWGSS QA T+L AL+ + RL +EDHVKNFR QCL +TG P+ RP L+H TK++G+++CG V + K Q +WL K+K+KAF+ V LR G ++Q GLG+++PNTL+LG+ W AD VD + N+ HDAFD++YGV ++RL++G DI+ + ++ Q ++ G D Y++ D D S+ + P + + KES+ P + + F KK+ K IDVWWL+DDGGLT+L+P+LL+ W+ CK+R+F +I ++ MA LL KFRIDFS ++ IN P+ +++ F+ + L D + DK KT RQIRL ELL EHSS A +IV++LP+ +K V+S +YM+WLE LS DLPPI++VRGN SVLTFYS
Sbjct: 203 THTNTYYLRTFGHNTMDAVPRIDHYRHTAAQ---LGEKLLRPSLAELHDELEKEPFEDGFANGEESTPTRDAV-----VTYTAESK-GVVKFGWIKGVLVRCMLNIWGVMLFIRLSWIVGQAGIGLSVLVIMMATVVTTITGLSTSAIATNGFVRGGGAYYLISRSLGPEFGGAIGLIFAFANAVAVAMYVVGFAETVVELLKEHSILMIDEINDIRIIGAITVVILLGISVAGMEWEAKAQIVLLVILLLAIGDFVIGTFIP-----LESKKPKGFFGYKSEIFNENFGPDFREEETFFSVFAIFFPAATGILAGANISGDLADPQSAIPKGTLLAILITTLVYVGIAVSVGSCVVRDATGNVN-----DTIVTELTNCTSAACKLNFDFSSCESSPCSYGLMNNFQVMSMVSGFTPLISAGIFSATLSSALASLVSAPKIFQALCKDNIYPAFQMFAKGYGKNNEPLRGYILTFLIALGFILIAELNVIAPIISNFFLASYALINFSVFHASLAKSPGWRPAFKYYNMWISLLGAILCCIVMFVINWWAALLTYVIVLGLYIYVTYKKPDVNWGSSTQALTYLNALQHSIRLSGVEDHVKNFRPQCLVMTGAPNSRPALLHLVHDFTKNVGLMICGHVHMGPRRQAMKEMSIDQAKYQRWLIKNKMKAFYAPVHADDLREGAQYLMQAAGLGRMKPNTLVLGFKKDWLQADMRDVDMYINLFHDAFDIQYGVVVIRLKEGLDISHLQGQEELLSSQEKSPGTKDVVVSVEYSKKSDLDTSKPLSEKPITHKVEEEDGKTATQPLLKKESKGPIVPLNVADQKLLEASTQFQKKQGKNTIDVWWLFDDGGLTLLIPYLLTTKKKWKDCKIRVFIGGKINRIDHDRRAMATLLSKFRIDFSDIMVLGDINTKPKKENIIAFEEIIEPYRLHEDDKEQDIADKMKEDEPWRITDNELELYKTKTYRQIRLNELLKEHSSTANIIVMSLPVARKGAVSSALYMAWLEALSKDLPPILLVRGNHQSVLTFYS 1212 The following BLAST results are available for this feature:
BLAST of TCONS_00061929 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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