|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061928 ID=TCONS_00061928|Name=TCONS_00061928|organism=Clytia hemisphaerica|type=transcript|length=2873bpRun BLAST on NCBI protein sequence of TCONS_00061928-protein >TCONS_00061928-protein ID=TCONS_00061928-protein|Name=TCONS_00061928-protein|organism=Clytia hemisphaerica|type=polypeptide|length=751bp MFASINGQAQLTSLLNETYTSIGQLKSCLCSRSSRYAKTKIKGKRQERALRun BLAST on NCBI transcript from alignment at scaffold_361:1282598..1317643+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061928 ID=TCONS_00061928|Name=TCONS_00061928|organism=Clytia hemisphaerica|type=transcript|length=35046bp|location=Sequence derived from alignment at scaffold_361:1282598..1317643+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_361:1282598..1317643+ >TCONS_00061928 ID=TCONS_00061928|Name=TCONS_00061928|organism=Clytia hemisphaerica|type=CDS|length=36096bp|location=Sequence derived from alignment at scaffold_361:1282598..1317643+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061928 vs. Swiss-Prot (Human)
Match: YMEL1 (ATP-dependent zinc metalloprotease YME1L1 OS=Homo sapiens GN=YME1L1 PE=1 SV=2) HSP 1 Score: 540.036 bits (1390), Expect = 6.036e-178 Identity = 278/439 (63.33%), Postives = 343/439 (78.13%), Query Frame = 3
Query: 1191 KKFRFTDVQGCDEAKAELQEVVEFLKSPEKFERLGAKXXXXXXXXXXXXXXKTLLARAIAGEADVPFFFASGSEFDEMFVGVGASRVRKLFAAAKERAPCIIFIDELDAIGGTRVTNDHQPYSRMTLNQLLVELDGFDQTEGIIVIGATNFPEILDKALTRPGRFDSKVHVLLPDVRGRKEILNLYLAKSPVAQDVDSGVLARGTPGLSGADLYNLINQAALRAAGLDKELITMDDLEWAKDKIYMGPERKSAVIEEKNRTLVAFHESGHAIVAIFTPDASPVHKATVIPRGSALGYVMQLPEKDELSWSKKQLLAKMDVCMGGRVAEEMIFGEDSITTGASSDMQQATKIARAMVTQYGMSEKVGTVLIDEQQEKLSPELQAVIESEVKRLINEAYNRAKKILSTKAKEHKRLAEGLLKYETLNADELKLVIQGKALE 2507
K F V+G +EAK ELQEVVEFLK+P+KF LG KLP G+LL+GPPGTGKTLLARA+AGEADVPF++ASGSEFDEMFVGVGASR+R LF AK APC+IFIDELD++GG R+ + PYSR T+NQLL E+DGF EG+I+IGATNFPE LD AL RPGRFD +V V PDV+GR EIL YL K Q VD ++ARGT G SGA+L NL+NQAAL+AA KE++TM +LE++KDKI MGPER+S I+ KN+T+ A+HESGHAI+A +T DA P++KAT++PRG LG+V LPE D + ++ QLLA+MDV MGGRVAEE+IFG D ITTGASSD ATKIA+ MVT++GMSEK+G V+ KLSPE Q+ IE E++ L+ ++Y RAK IL T AKEHK LAE LL YETL+A E+++V++GK LE
Sbjct: 334 KNVTFEHVKGVEEAKQELQEVVEFLKNPQKFTILGGKLPKGILLVGPPGTGKTLLARAVAGEADVPFYYASGSEFDEMFVGVGASRIRNLFREAKANAPCVIFIDELDSVGGKRIESPMHPYSRQTINQLLAEMDGFKPNEGVIIIGATNFPEALDNALIRPGRFDMQVTVPRPDVKGRTEILKWYLNKIKFDQSVDPEIIARGTVGFSGAELENLVNQAALKAAVDGKEMVTMKELEFSKDKILMGPERRSVEIDNKNKTITAYHESGHAIIAYYTKDAMPINKATIMPRGPTLGHVSLLPENDRWNETRAQLLAQMDVSMGGRVAEELIFGTDHITTGASSDFDNATKIAKRMVTKFGMSEKLG-VMTYSDTGKLSPETQSAIEQEIRILLRDSYERAKHILKTHAKEHKNLAEALLTYETLDAKEIQIVLEGKKLE 771 The following BLAST results are available for this feature:
BLAST of TCONS_00061928 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.