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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061926 ID=TCONS_00061926|Name=TCONS_00061926|organism=Clytia hemisphaerica|type=transcript|length=3137bpRun BLAST on NCBI protein sequence of TCONS_00061926-protein >TCONS_00061926-protein ID=TCONS_00061926-protein|Name=TCONS_00061926-protein|organism=Clytia hemisphaerica|type=polypeptide|length=444bp MDVADAAVGVPKVKDELAERCQKLFQDFLEEFTVDGEVKYLSEAQELIRPRun BLAST on NCBI transcript from alignment at scaffold_361:1186443..1200482+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061926 ID=TCONS_00061926|Name=TCONS_00061926|organism=Clytia hemisphaerica|type=transcript|length=14040bp|location=Sequence derived from alignment at scaffold_361:1186443..1200482+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_361:1186443..1200482+ >TCONS_00061926 ID=TCONS_00061926|Name=TCONS_00061926|organism=Clytia hemisphaerica|type=CDS|length=10680bp|location=Sequence derived from alignment at scaffold_361:1186443..1200482+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00061926 vs. Swiss-Prot (Human)
Match: MCM6 (DNA replication licensing factor MCM6 OS=Homo sapiens GN=MCM6 PE=1 SV=1) HSP 1 Score: 609.372 bits (1570), Expect = 0.000e+0 Identity = 288/399 (72.18%), Postives = 343/399 (85.96%), Query Frame = 3
Query: 216 MDVADAA---VGVP--KVKDELAERCQKLFQDFLEEF-TVDGEVKYLSEAQELIRPERNTLTVDFRDVETYKSELATTIQEEYYRVYPFLCRAVRNYARDRGEVPLTKEFYVSFISLPTRHKIRELSTQKIGSLLRISGQVVRTHPVHPELVSGTFKCLDCQTIIKEVDQQFKYTQPSICRNQVCQNRQRFELDIDKSRFVDFQKVRIQETQAELPRGCIPRSVEIVLRAEAVEKAQAGDKCDFTGSLIVVPDVAQINMPGSRAETRGRNKQGAG-DVEGVRGLKSLGVRDLTYRLAFLACSVTATNPRFGGKDLSAEDMTAEAIKSQMTEQEWHKIYEMSQDKNLYHHLITSMFPTIHGNDEVKRGVLLMLFGGVPKTTGEGTTLRGDINVCIVGDPS 1391
MD+A AA G +V+DE+AE+CQKLF DFLEEF + DGE+KYL A+ELIRPERNTL V F D+E + +L+TTIQEE+YRVYP+LCRA++ + +DR E+PL K+FYV+F LPTRHKIREL++ +IG L RISGQVVRTHPVHPELVSGTF CLDCQT+I++V+QQFKYTQP+ICRN VC NR+RF LD +KSRFVDFQKVRIQETQAELPRG IPRS+E++LRAEAVE AQAGDKCDFTG+LIVVPDV++++ PG+RAET R G + EG+RGL++LGVRDL+YRL FLAC V TNPRFGGK+L E+ TAE+IK+QMT +EW K++EMSQDKNLYH+L TS+FPTIHGNDEVKRGVLLMLFGGVPKTTGEGT+LRGDINVCIVGDPS
Sbjct: 1 MDLAAAAEPGAGSQHLEVRDEVAEKCQKLFLDFLEEFQSSDGEIKYLQLAEELIRPERNTLVVSFVDLEQFNQQLSTTIQEEFYRVYPYLCRALKTFVKDRKEIPLAKDFYVAFQDLPTRHKIRELTSSRIGLLTRISGQVVRTHPVHPELVSGTFLCLDCQTVIRDVEQQFKYTQPNICRNPVCANRRRFLLDTNKSRFVDFQKVRIQETQAELPRGSIPRSLEVILRAEAVESAQAGDKCDFTGTLIVVPDVSKLSTPGARAETNSRVSGVDGYETEGIRGLRALGVRDLSYRLVFLACCVAPTNPRFGGKELRDEEQTAESIKNQMTVKEWEKVFEMSQDKNLYHNLCTSLFPTIHGNDEVKRGVLLMLFGGVPKTTGEGTSLRGDINVCIVGDPS 399 HSP 2 Score: 567.77 bits (1462), Expect = 0.000e+0 Identity = 300/455 (65.93%), Postives = 358/455 (78.68%), Query Frame = 2
Query: 1394 KTTGEGTTLRGDINVCIVGDPSTAKSQFLKQIEQFSPRAVYTSGKASSAAGLTAAVVKDEESAEFVIEAGALMLADNGVCCIDEFDKMETKDQVAIHEAMEQQTISITKAGVKATLNARTSILAAANPIGGRYDRTKSLKQNITLSAPIMSRFDLFFILVDECNEVTDYAIARRIVDLHSRNEESVERVYSVDEVQRYLTFARLFKPTITKEAQDYMVTQYKHLRQRDSSGVAKSAWRITVRQLESMIRLSESLTRLHCQDMVTPKHVKEAYRLLNKSIIRVETPDIQXXXXXXXXXXXXDVEMTEEQXXXXXXXXXXXXXXXXS------KTNGEKAAARKVTLSYEKYRRIANTLILFMRQEEDKPTESETGIRRMDVVNWYLKENEKDIDSAAELEEHTFLIGKIIDRLVKSDGVLLALKEPFLXXXXXXXXXXXXXXNPYLVVHPNYIIDE 2740
KTTGEGT+LRGDINVCIVGDPSTAKSQFLK +E+FSPRAVYTSGKASSAAGLTAAVV+DEES EFVIEAGALMLADNGVCCIDEFDKM+ +DQVAIHEAMEQQTISITKAGVKATLNARTSILAAANPI G YDR+KSLKQNI LSAPIMSRFDLFFILVDECNEVTDYAIARRIVDLHSR EES++RVYS+D+++RYL FAR FKP I+KE++D++V QYKHLRQRD SGV KS+WRITVRQLESMIRLSE++ R+HC D V PKHVKEA+RLLNKSIIRVETPD+ E+++M ++ + A +PA N E A + L + +Y RI+N ++L +R+ E++ E E+ ++R ++VNWYLKE E +IDS EL +I K+I RL D VL+ L + L G E +E E +PYLVV+PNY++++
Sbjct: 378 KTTGEGTSLRGDINVCIVGDPSTAKSQFLKHVEEFSPRAVYTSGKASSAAGLTAAVVRDEESHEFVIEAGALMLADNGVCCIDEFDKMDVRDQVAIHEAMEQQTISITKAGVKATLNARTSILAAANPISGHYDRSKSLKQNINLSAPIMSRFDLFFILVDECNEVTDYAIARRIVDLHSRIEESIDRVYSLDDIRRYLLFARQFKPKISKESEDFIVEQYKHLRQRDGSGVTKSSWRITVRQLESMIRLSEAMARMHCCDEVQPKHVKEAFRLLNKSIIRVETPDVN-------LDQEEEIQMEVDEGAGGINGHADSPAPVNGINGYNEDINQESAPKASLRLGFSEYCRISNLIVLHLRKVEEE--EDESALKRSELVNWYLKEIESEIDSEEELINKKRIIEKVIHRLTHYDHVLIELTQAGL--KGSTEGSESYEEDPYLVVNPNYLLED 821 The following BLAST results are available for this feature:
BLAST of TCONS_00061926 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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