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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061924 ID=TCONS_00061924|Name=TCONS_00061924|organism=Clytia hemisphaerica|type=transcript|length=478bp
AGTTAACTTGCATTTTTAGCTAAACCTTTTGATTTAGGTGTTATATAATA
TGTCTTTTTTAAAGATCTAATGTAAATACATAAGAAATGGCATCAAAAAG
TCAAACTTTGAGGTTGATAAGAAATTTATTGGTTGAGTTGAAACATCATG
AAGAATTGAAGAAAAGCACGGCAGAGCATCTATGTTGGCGCAAATCACCA
ATTTACAATGAAATTAGAAATCCCTCAACATTTTCAGATTTGGCCAATGT
TGAAAATATAAAGATTTACACAACAGTGCTTCATGGGAGCAGAAGAGCGC
AGGAGCTGATAGTGCAATATAGAGGGGTAGGTGAACGATCGGTGGAAGAA
ACTGCTCGCATGGTTGGATTAAAACTTCCCAAAAAGtatgaagataaaaa
tgaaacttagatatttagatttttaacataGCTGGCGTGTAAATTCTGAT
Attagtattttttaattttgtaatttag Run BLAST on NCBI protein sequence of TCONS_00061924-protein >TCONS_00061924-protein ID=TCONS_00061924-protein|Name=TCONS_00061924-protein|organism=Clytia hemisphaerica|type=polypeptide|length=107bp
MASKSQTLRLIRNLLVELKHHEELKKSTAEHLCWRKSPIYNEIRNPSTFS
DLANVENIKIYTTVLHGSRRAQELIVQYRGVGERSVEETARMVGLKLPKK
YEDKNET Run BLAST on NCBI transcript from alignment at scaffold_361:1173424..1174311+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061924 ID=TCONS_00061924|Name=TCONS_00061924|organism=Clytia hemisphaerica|type=transcript|length=888bp|location=Sequence derived from alignment at scaffold_361:1173424..1174311+ (Clytia hemisphaerica)
AGTTAACTTGCATTTTTAGCTAAACCTTTTGATTTAGGTGTTATATAATA
TGTCTTTTTTAAAGATCTAATGTAAATACATAAGAAATGGCATCAAAAAG
TCAAACTTTGAGGTTGATAAGAAATTTATTGGTTGAGTTGAAACATCATG
AAGAATTGAAGAAAAGCACGGCAGAGGTAAGAATTTAATTAGAATTTATC
CGTAAAAATTACCATTGATTTGAATTACGACACAAGAAGAGTTTAAATAA
GATTGGTTAGAGACCCACTGAGAGCCTAACTTGTAAATCTctgtaataaa
aaaaagttgatttgaCAATATACCttggatttttctttttattgttaaaa
tgaCACTTTTTCTATTACACCTTCTTATAATGTATTTTTATTGCAGCATC
TATGTTGGCGCAAATCACCAATTTACAATGAAATTAGAAATCCCTCAACA
TTTTCAGATTTGGCCAATGTTGAAAATATAAAGATTTACACAACAGTGCT
TCATGGGAGCAGAAGAGCGCAGGTGAAAATTTTATTCATTGAATATTATT
ACCCAAATAATAGGAACAGGGTTTTTCAGTGGCACAAACTATGAACAATA
CATACATTTTAAAAACtactatttatttttatttgaacaCAGTTTCAGTT
CAGTTGGAACTGGAAGTTTACTAGAATTACTTTGATTAATATTGTTGGTT
ACAACTTTGTAGGAGCTGATAGTGCAATATAGAGGGGTAGGTGAACGATC
GGTGGAAGAAACTGCTCGCATGGTTGGATTAAAACTTCCCAAAAAGtatg
aagataaaaatgaaacttagatatttagatttttaacataGCTGGCGTGT
AAATTCTGATAttagtattttttaattttgtaatttag Coding sequence (CDS) from alignment at scaffold_361:1173424..1174311+ >TCONS_00061924 ID=TCONS_00061924|Name=TCONS_00061924|organism=Clytia hemisphaerica|type=CDS|length=972bp|location=Sequence derived from alignment at scaffold_361:1173424..1174311+ (Clytia hemisphaerica)
ATGGCATCAAAAAGTCAAACTTTGAGGTTGATAAGAAATTTATTGGTTGA
GTTGAAACATCATGAAGAATTGAAGAAAAGCACGGCAGAGCATCTATGTT
GGCGCAAATCACCAATTTACAATGAAATTAGAAATCCCTCAACATTTTCA
GATTTGGCCAATGTTGAAAATATAAAGATTTACACAACAGTGCTTCATGG
GAGCAGAAGAGCGCAGGAGCTGATAGTGCAATATAGAGGGGTAGGTGAAC
GATCGGTGGAAGAAACTGCTCGCATGGTTGGATTAAAACTTCCCAAAAAG
tatgaagataaaaatgaaacttagATGGCATCAAAAAGTCAAACTTTGAG
GTTGATAAGAAATTTATTGGTTGAGTTGAAACATCATGAAGAATTGAAGA
AAAGCACGGCAGAGCATCTATGTTGGCGCAAATCACCAATTTACAATGAA
ATTAGAAATCCCTCAACATTTTCAGATTTGGCCAATGTTGAAAATATAAA
GATTTACACAACAGTGCTTCATGGGAGCAGAAGAGCGCAGGAGCTGATAG
TGCAATATAGAGGGGTAGGTGAACGATCGGTGGAAGAAACTGCTCGCATG
GTTGGATTAAAACTTCCCAAAAAGtatgaagataaaaatgaaacttagAT
GGCATCAAAAAGTCAAACTTTGAGGTTGATAAGAAATTTATTGGTTGAGT
TGAAACATCATGAAGAATTGAAGAAAAGCACGGCAGAGCATCTATGTTGG
CGCAAATCACCAATTTACAATGAAATTAGAAATCCCTCAACATTTTCAGA
TTTGGCCAATGTTGAAAATATAAAGATTTACACAACAGTGCTTCATGGGA
GCAGAAGAGCGCAGGAGCTGATAGTGCAATATAGAGGGGTAGGTGAACGA
TCGGTGGAAGAAACTGCTCGCATGGTTGGATTAAAACTTCCCAAAAAGta
tgaagataaaaatgaaacttag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061924-exon-scaffold_361-1491911889:1173424..1173599 | TCONS_00061924-exon-scaffold_361-1491911889:1173424..1173599 | Clytia hemisphaerica | exon |
| TCONS_00061924-exon-scaffold_361-1510915933:1173424..1173599 | TCONS_00061924-exon-scaffold_361-1510915933:1173424..1173599 | Clytia hemisphaerica | exon |
| TCONS_00061924-exon-scaffold_361-1575043694:1173424..1173599 | TCONS_00061924-exon-scaffold_361-1575043694:1173424..1173599 | Clytia hemisphaerica | exon |
| TCONS_00061924-exon-scaffold_361-1491911889:1173820..1173945 | TCONS_00061924-exon-scaffold_361-1491911889:1173820..1173945 | Clytia hemisphaerica | exon |
| TCONS_00061924-exon-scaffold_361-1510915933:1173820..1173945 | TCONS_00061924-exon-scaffold_361-1510915933:1173820..1173945 | Clytia hemisphaerica | exon |
| TCONS_00061924-exon-scaffold_361-1575043694:1173820..1173945 | TCONS_00061924-exon-scaffold_361-1575043694:1173820..1173945 | Clytia hemisphaerica | exon |
| TCONS_00061924-exon-scaffold_361-1491911889:1174136..1174311 | TCONS_00061924-exon-scaffold_361-1491911889:1174136..1174311 | Clytia hemisphaerica | exon |
| TCONS_00061924-exon-scaffold_361-1510915933:1174136..1174311 | TCONS_00061924-exon-scaffold_361-1510915933:1174136..1174311 | Clytia hemisphaerica | exon |
| TCONS_00061924-exon-scaffold_361-1575043694:1174136..1174311 | TCONS_00061924-exon-scaffold_361-1575043694:1174136..1174311 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:1173424..1174311 + |
Blast
The following BLAST results are available for this feature:
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