TCONS_00061901 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061901
Unique NameTCONS_00061901
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1664

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061901 ID=TCONS_00061901|Name=TCONS_00061901|organism=Clytia hemisphaerica|type=transcript|length=1664bp
GGCACGCcaaggcacgttggcacgcaggcacgcatggcacgtaggcacgc
tggcacgcatagcacgctggcacgcgtggcacgcgatttagcagactcgc
tTCGAGAGCATCTGGCAAGTTCAACTCTGCTCGTTGTTCGTTAATGGAGA
CCTACCCAACTGGCTCTAACGGTGGCGGCGTCGCAGAAGCCACCGAAGCG
GTCCACAGTGACGAACAGAGCGACGTATTCTTAAAAGACACGAAAAGTAA
ATcgaatttatcaatttttcgacATGGCGATTTTCGATATCGTAAATCGA
TTTATGCGACATTATTTGCAGTATTTTTCATCGCttcgattttgtttttg
atgttgTACTTGAGGTGTTACGATTCTTATGTTCAATTGGCTGAACAAAA
AGaaattttcgaGTTGCGATATCAAGGGTGTATCGGTTGTTCGAGTTCTC
GATCGTATTGTTCGAATCAAACGGGTGAATATCGATGTCATTGCAAACGA
GGTTACTTCGACGACAATGGGGTGTGTCAATATACATCATTTTCGATGAA
ACTCGGTAACAAAACACACAATCTGCccatcaaagatgaagagaaaGACA
AACAAACTTCTATTCTATCTGTTTGTTTTTGGATACGCGCTGAGAAAGGA
AGTTCAGATTCGACTCTTCAAATTCTACAGTCTAAAGATACAGACTTCTC
ACTCAGTGTAGACGGGGCTGGAAATCTTCAAGTTAAATTTCCTTCCTTTC
GAACGCCGAGGGTCGTCGATTTGCGTTCTCCTTTGAATCGGTGGACACAT
TTATGTGTTTCAATGAGAAGACTTTTATCTGTTTACGTCAACGGAAAATC
ACATCGTAGTATGACCATTGATGTGCTAGGAATGACCAGTATTGAATCAC
TTTTACACTTTGGTCAACGGAATAAGGGTACATATAATTGGGACATTTCA
GACTATTACCTCTTGCGACAAGAACTTCAAGGGAgagatgttttgaattt
ttttccatccAACACAGGGATACATCCCTATGAATACCTTGTCACTTGGA
ATGATGTGGTTTCTTACGCTCAAAATAATTCCATACCTTTGAGGAAATTT
CTTTTGTGAGTATCTACTTTGAAAATGATCGAAGCTTGTATTTGGTGTGG
CTAATATCGAATTTGTCATTACTTTGATATATACCATTGAAGATTAAAGA
TCGAAACGTTAAAAAAAACCTTGTGTGAAGTTTTTGCTTCCTTGTGAAGA
CATTTCAACAAGTAAAAGTGTTTGAATTTGTTAATCACTGTTATTTTTCT
GGTATACAATCATGTTGTTGTAGATATGTTCAATATGGAAACTTTAGACG
CCACGTGCGCAAACTAGAAAACTTTGTTACTACTTATAAACACTATCTGT
TGCCGGAAAGTGCTGATGGCCTTATAGGATCCTCATATGTCAATCAAGAA
CAATTTGTGTCAAGGGTAGTTTTTCCTCCCAATGAGGTATCACTCATCCT
AAATGTGGCAATGAAGAAGTCCTTGGATTTAAAgatttgtattttgtttt
attccggtctgttatttatttgaatttatcacaaaataatcatattttat
tacaaaaatttatatatttatattaATTGTCAAGTTATTTCATAAACCAT
GTGTAGTCCaagct
Run BLAST on NCBI

protein sequence of TCONS_00061901-protein

>TCONS_00061901-protein ID=TCONS_00061901-protein|Name=TCONS_00061901-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
METYPTGSNGGGVAEATEAVHSDEQSDVFLKDTKSKSNLSIFRHGDFRYR
KSIYATLFAVFFIASILFLMLYLRCYDSYVQLAEQKEIFELRYQGCIGCS
SSRSYCSNQTGEYRCHCKRGYFDDNGVCQYTSFSMKLGNKTHNLPIKDEE
KDKQTSILSVCFWIRAEKGSSDSTLQILQSKDTDFSLSVDGAGNLQVKFP
SFRTPRVVDLRSPLNRWTHLCVSMRRLLSVYVNGKSHRSMTIDVLGMTSI
ESLLHFGQRNKGTYNWDISDYYLLRQELQGRDVLNFFPSNTGIHPYEYLV
TWNDVVSYAQNNSIPLRKFLL
Run BLAST on NCBI

transcript from alignment at scaffold_361:701924..705192+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061901 ID=TCONS_00061901|Name=TCONS_00061901|organism=Clytia hemisphaerica|type=transcript|length=3269bp|location=Sequence derived from alignment at scaffold_361:701924..705192+ (Clytia hemisphaerica)
GGCACGCcaaggcacgttggcacgcaggcacgcatggcacgtaggcacgc
tggcacgcatagcacgctggcacgcgtggcacgcgatttagcagactcgc
tTCGAGAGCATCTGGCAAGTTCAACTCTGCTCGTTGTTCGTTAATGGAGA
CCTACCCAACTGGCTCTAACGGTGGCGGCGTCGCAGAAGCCACCGAAGCG
GTCCACAGTGACGAACAGAGCGACGTATTCTTAAAAGACACGAAAAGTAA
ATcgaatttatcaatttttcgacATGGCGATTTTCGATATCGTAAATCGA
TTTATGCGACATTATTTGCAGTATTTTTCATCGCttcgattttgtttttg
atgttgTACTTGAGGTGTTACGATTCTTATGTTCAATTGGCTGAACAAAA
AGGTATATCTTCTTATCCTTAACTcttcttatttatttttgttggTTTAT
TCTGAGGAGCAATTATATTTGGTtacagaaattttttaaaattggagtat
aattttccaaagGAAATATCGTCCATATTTTGGCTAAATCTTTGGAATGG
GAATGGGTCCCAACAGGCCTATGAGAAGGGTTTTACAAATGAAATTTATC
ACATAGTATTTTCGTTTGTTTGTCTATTTCATTCGGATTATGGTTTTTAT
AAGCACTAAATGGTCGTTGTTTTAATAGTGAATGCAAGGTCTTTGACTTT
CAAGTCGTGTCAACTCTTGAAAtacgtaagtcatttttctagcggaagcA
ACCGAAAAAAGCCAGGATTTCACCCCTCTCTGTTACGGTtttttttgggt
gcttctgttaaaaattatgacgtcattttgactTACGCATATATTAAGAA
TTACCCAGATGATAATGGACAGaccttaatttttctttgaaatcttAATA
TTAAATAtctttcgtttattttgaatattattGAGATGGGACTGACCTTA
GTGAAATGAGTCATttagaaaaacttcaaaagtaaCAGGATAAACTCGAC
AAAGTCTCACCTcgtgaaaaagttcaaaaaagaaAGGTCTTATTCTGTGT
tataaaattaagtaaaataaTAACCAATCTCCCCTTAATATTAAAATTTG
ACCCTAACCCAGATCATAAAAAGCCGAGAGGGAGGTCAGTGTTTATCAAT
TCAATTTATCTCTTGTCACTGaatatataaattatttttaatgtccCTCT
CATCTTGACTCccttttcttgaaaaaacgtGTTTTCATCAAATGGGATAT
TTTACAAATTCTTCTACTCCCTCCTTGTTCGcttatttaaaatgaaaact
aTTGCAAACTCTTATCTGGAGAATCTATTTGGGATAGTTATactgtcttt
ttattttcaccagGACTCGACAAATAAGTAACTTGGAGTAGTCAAGGGGA
TGGCCTGTTTCGGAAGAATTGTCTTTGAGGATAGGGACTTTTTCtagcgt
gattgcgtgatttgaaatttttttcttcgtgattgcgtgatcagaggtca
aaacgtgatcgtgatttaaaagacttttgagccgtgatgcgtgatttagA
CATTTCCAAAGGGGTGCGTGATCAtccaatttttttgctgttttatgcgt
gatatcgtgatcagagttactgCTGGGGGGAGGGGGGCTCTAAGCTTACC
AAAAAAAATAGTTTAGATAATAGTCATGAGAAGGTAAGATAAGGCACGTT
TTGCTCTTGATACCTACAAACTTACTGTCtaacagaattgaaaatgtgtt
gtttgttttcagaaattttcgaGTTGCGATATCAAGGGTGTATCGGTTGT
TCGAGTTCTCGATCGTATTGTTCGAATCAAACGGGTGAATATCGATGTCA
TTGCAAACGAGGTTACTTCGACGACAATGGGGTGTGTCAATGTGAGTCGT
TTTAAAGTCGTTTTAGAATCGTTTTAAAGTCGTTTTAGAATCATTTTAAA
ATCGTTTTAACTCATTCTAATAATCAGGGTCAATAGATCTTAtaggagtt
tttgatttttctaagaaaaatgcATCATttcattgtgggattgtttttgg
agtattacaatagaattctctCGAGGatgaattcctaagagattcaaatt
ccaaagattcaaattgaattttcttcttctttctagATACATCATTTTCG
ATGAAACTCGGTAACAAAACACACAATCTGCccatcaaagatgaagagaa
aGACAAACAAACTTCTATTCTATCTGTTTGTTTTTGGATACGCGCTGAGA
AAGGAAGTTCAGATTCGACTCTTCAAATTCTACAGTCTAAAGATACAGAC
TTCTCACTCAGTGTAGACGGGGCTGGAAATCTTCAAGTTAAATTTCCTTC
CTTTCGAACGCCGAGGGTCGTCGATTTGCGTTCTCCTTTGAATCGGTGGA
CACATTTATGTGTTTCAATGAGAAGACTTTTATCTGTTTACGTCAACGGA
AAATCACATCGTAGTATGACCATTGATGTGCTAGGAATGACCAGTATTGA
ATCACTTTTACACTTTGGTCAACGGAATAAGGGTACATATAATTGGGACA
TTTCAGACTATTACCTCTTGCGACAAGAACTTCAAGGGAgagatgttttg
aatttttttccatccAACACAGGGATACATCCCTATGAATACCTTGTCAC
TTGGAATGATGTGGTTTCTTACGCTCAAAATAATTCCATACCTTTGAGGA
AATTTCTTTTGTGAGTATCTACTTTGAAAATGATCGAAGCTTGTATTTGG
TGTGGCTAATATCGAATTTGTCATTACTTTGATATATACCATTGAAGATT
AAAGATCGAAACGTTAAAAAAAACCTTGTGTGAAGTTTTTGCTTCCTTGT
GAAGACATTTCAACAAGTAAAAGTGTTTGAATTTGTTAATCACTGTTATT
TTTCTGGTATACAATCATGTTGTTGTAGATATGTTCAATATGGAAACTTT
AGACGCCACGTGCGCAAACTAGAAAACTTTGTTACTACTTATAAACACTA
TCTGTTGCCGGAAAGTGCTGATGGCCTTATAGGATCCTCATATGTCAATC
AAGAACAATTTGTGTCAAGGGTAGTTTTTCCTCCCAATGAGGTATCACTC
ATCCTAAATGTGGCAATGAAGAAGTCCTTGGATTTAAAgatttgtatttt
gttttattccggtctgttatttatttgaatttatcacaaaataatcatat
tttattacaaaaatttatatatttatattaATTGTCAAGTTATTTCATAA
ACCATGTGTAGTCCaagct

Coding sequence (CDS) from alignment at scaffold_361:701924..705192+

>TCONS_00061901 ID=TCONS_00061901|Name=TCONS_00061901|organism=Clytia hemisphaerica|type=CDS|length=2898bp|location=Sequence derived from alignment at scaffold_361:701924..705192+ (Clytia hemisphaerica)
ATGGAGACCTACCCAACTGGCTCTAACGGTGGCGGCGTCGCAGAAGCCAC
CGAAGCGGTCCACAGTGACGAACAGAGCGACGTATTCTTAAAAGACACGA
AAAGTAAATcgaatttatcaatttttcgacATGGCGATTTTCGATATCGT
AAATCGATTTATGCGACATTATTTGCAGTATTTTTCATCGCttcgatttt
gtttttgatgttgTACTTGAGGTGTTACGATTCTTATGTTCAATTGGCTG
AACAAAAAGaaattttcgaGTTGCGATATCAAGGGTGTATCGGTTGTTCG
AGTTCTCGATCGTATTGTTCGAATCAAACGGGTGAATATCGATGTCATTG
CAAACGAGGTTACTTCGACGACAATGGGGTGTGTCAATATACATCATTTT
CGATGAAACTCGGTAACAAAACACACAATCTGCccatcaaagatgaagag
aaaGACAAACAAACTTCTATTCTATCTGTTTGTTTTTGGATACGCGCTGA
GAAAGGAAGTTCAGATTCGACTCTTCAAATTCTACAGTCTAAAGATACAG
ACTTCTCACTCAGTGTAGACGGGGCTGGAAATCTTCAAGTTAAATTTCCT
TCCTTTCGAACGCCGAGGGTCGTCGATTTGCGTTCTCCTTTGAATCGGTG
GACACATTTATGTGTTTCAATGAGAAGACTTTTATCTGTTTACGTCAACG
GAAAATCACATCGTAGTATGACCATTGATGTGCTAGGAATGACCAGTATT
GAATCACTTTTACACTTTGGTCAACGGAATAAGGGTACATATAATTGGGA
CATTTCAGACTATTACCTCTTGCGACAAGAACTTCAAGGGAgagatgttt
tgaatttttttccatccAACACAGGGATACATCCCTATGAATACCTTGTC
ACTTGGAATGATGTGGTTTCTTACGCTCAAAATAATTCCATACCTTTGAG
GAAATTTCTTTTGTGAATGGAGACCTACCCAACTGGCTCTAACGGTGGCG
GCGTCGCAGAAGCCACCGAAGCGGTCCACAGTGACGAACAGAGCGACGTA
TTCTTAAAAGACACGAAAAGTAAATcgaatttatcaatttttcgacATGG
CGATTTTCGATATCGTAAATCGATTTATGCGACATTATTTGCAGTATTTT
TCATCGCttcgattttgtttttgatgttgTACTTGAGGTGTTACGATTCT
TATGTTCAATTGGCTGAACAAAAAGaaattttcgaGTTGCGATATCAAGG
GTGTATCGGTTGTTCGAGTTCTCGATCGTATTGTTCGAATCAAACGGGTG
AATATCGATGTCATTGCAAACGAGGTTACTTCGACGACAATGGGGTGTGT
CAATATACATCATTTTCGATGAAACTCGGTAACAAAACACACAATCTGCc
catcaaagatgaagagaaaGACAAACAAACTTCTATTCTATCTGTTTGTT
TTTGGATACGCGCTGAGAAAGGAAGTTCAGATTCGACTCTTCAAATTCTA
CAGTCTAAAGATACAGACTTCTCACTCAGTGTAGACGGGGCTGGAAATCT
TCAAGTTAAATTTCCTTCCTTTCGAACGCCGAGGGTCGTCGATTTGCGTT
CTCCTTTGAATCGGTGGACACATTTATGTGTTTCAATGAGAAGACTTTTA
TCTGTTTACGTCAACGGAAAATCACATCGTAGTATGACCATTGATGTGCT
AGGAATGACCAGTATTGAATCACTTTTACACTTTGGTCAACGGAATAAGG
GTACATATAATTGGGACATTTCAGACTATTACCTCTTGCGACAAGAACTT
CAAGGGAgagatgttttgaatttttttccatccAACACAGGGATACATCC
CTATGAATACCTTGTCACTTGGAATGATGTGGTTTCTTACGCTCAAAATA
ATTCCATACCTTTGAGGAAATTTCTTTTGTGAATGGAGACCTACCCAACT
GGCTCTAACGGTGGCGGCGTCGCAGAAGCCACCGAAGCGGTCCACAGTGA
CGAACAGAGCGACGTATTCTTAAAAGACACGAAAAGTAAATcgaatttat
caatttttcgacATGGCGATTTTCGATATCGTAAATCGATTTATGCGACA
TTATTTGCAGTATTTTTCATCGCttcgattttgtttttgatgttgTACTT
GAGGTGTTACGATTCTTATGTTCAATTGGCTGAACAAAAAGaaattttcg
aGTTGCGATATCAAGGGTGTATCGGTTGTTCGAGTTCTCGATCGTATTGT
TCGAATCAAACGGGTGAATATCGATGTCATTGCAAACGAGGTTACTTCGA
CGACAATGGGGTGTGTCAATATACATCATTTTCGATGAAACTCGGTAACA
AAACACACAATCTGCccatcaaagatgaagagaaaGACAAACAAACTTCT
ATTCTATCTGTTTGTTTTTGGATACGCGCTGAGAAAGGAAGTTCAGATTC
GACTCTTCAAATTCTACAGTCTAAAGATACAGACTTCTCACTCAGTGTAG
ACGGGGCTGGAAATCTTCAAGTTAAATTTCCTTCCTTTCGAACGCCGAGG
GTCGTCGATTTGCGTTCTCCTTTGAATCGGTGGACACATTTATGTGTTTC
AATGAGAAGACTTTTATCTGTTTACGTCAACGGAAAATCACATCGTAGTA
TGACCATTGATGTGCTAGGAATGACCAGTATTGAATCACTTTTACACTTT
GGTCAACGGAATAAGGGTACATATAATTGGGACATTTCAGACTATTACCT
CTTGCGACAAGAACTTCAAGGGAgagatgttttgaatttttttccatccA
ACACAGGGATACATCCCTATGAATACCTTGTCACTTGGAATGATGTGGTT
TCTTACGCTCAAAATAATTCCATACCTTTGAGGAAATTTCTTTTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038817XLOC_038817Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061901-proteinTCONS_00061901-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061901-exon-scaffold_361-1491911889:701924..702325TCONS_00061901-exon-scaffold_361-1491911889:701924..702325Clytia hemisphaericaexon
TCONS_00061901-exon-scaffold_361-1510915933:701924..702325TCONS_00061901-exon-scaffold_361-1510915933:701924..702325Clytia hemisphaericaexon
TCONS_00061901-exon-scaffold_361-1575043694:701924..702325TCONS_00061901-exon-scaffold_361-1575043694:701924..702325Clytia hemisphaericaexon
TCONS_00061901-exon-scaffold_361-1491911889:703686..703814TCONS_00061901-exon-scaffold_361-1491911889:703686..703814Clytia hemisphaericaexon
TCONS_00061901-exon-scaffold_361-1510915933:703686..703814TCONS_00061901-exon-scaffold_361-1510915933:703686..703814Clytia hemisphaericaexon
TCONS_00061901-exon-scaffold_361-1575043694:703686..703814TCONS_00061901-exon-scaffold_361-1575043694:703686..703814Clytia hemisphaericaexon
TCONS_00061901-exon-scaffold_361-1491911889:704060..705192TCONS_00061901-exon-scaffold_361-1491911889:704060..705192Clytia hemisphaericaexon
TCONS_00061901-exon-scaffold_361-1510915933:704060..705192TCONS_00061901-exon-scaffold_361-1510915933:704060..705192Clytia hemisphaericaexon
TCONS_00061901-exon-scaffold_361-1575043694:704060..705192TCONS_00061901-exon-scaffold_361-1575043694:704060..705192Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:701924..705192 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0276081	0.036989	0	0.0260403	2.19743	2.18455	2.2665	1.67	1.06701	1.3395	1.41025	1.16627	0.816707	0.519446	2.31345	2.94835	1.58033	1.89736	3.41913	2.56748	2.24222	2.38887	1.20898	2.35929	3.87125	2.99725	0.0276083	0.137313
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009030Growth_fac_rcpt_
IPR013320ConA-like_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061901 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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