TCONS_00061900 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061900
Unique NameTCONS_00061900
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1614

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061900 ID=TCONS_00061900|Name=TCONS_00061900|organism=Clytia hemisphaerica|type=transcript|length=1614bp
AAACAAGGAAACTAACATGATCCCGCTTTCAGAATTAGTCTGATTGATCA
GTTTGGCAATCTTTTATGGACAATATCTACACATAACTGAATTTGATTTC
CTTACTAGTGGCATATCGTTTTATCTTTTAGACTAAAAAAtactaaagaa
aaaaaacattcaatggTATTACTCAAAATCCTGAAACCAATTCAAACACC
ACTGTTATGGCGTAATTTACAAATACAAAATGGTACTTTAGCTGTGGTGA
CAACCTGCTTGTTATGTCAACAGCAGAAACGTTATGCAGGCCATTCGAAA
TGGGCCAAcatcaaattcaagaaaatgcacaaaGATAATGCAAGGGCCAA
AGTTTTCGGACAATTATCACGTGAGATCATACAAGCTGTTAAAGAGAAAG
GTGCTGATCCAGTTTACAATGCGAAGTTAGAGGGTCTGGTGTTGAAAGCA
AGATCCTCAAGCATGCCAAAAGAACGCATcgaaaattcaatcaaaaatgc
TTTAAGGAGCTCCTACGAGAAAGCCACGCAATCGCTATTTCAAGCAAGGG
GACCCATGAAATGTGGTCTTATGATCGACGTCTTGGCGCCAAATGTCATT
CGAACGaaaaacgaaatcaaaacaatccTAAAGAAGAACGAtGCGACATT
CATTTCTGACGGTTCTGTTGCCTTCATGTTCGATCATAAAGGTGTGGTGA
CAATCAAAGATAAATTGTCCAAACCTTCTGAGAACGGTGGTGATATCGTT
GAAGTCGTGGCTGATGAACATGCGATCGATCAAGCGGAAGAGATAGCGAT
CGAAGTAGGTGCAGAAGACGTCCATTTTTCGTACAATGAACAACTTGATC
AACGAGTCATTCAGTTCTTATGTCAACCATTGGAGATTCAAACTATTCGT
AAGGAGATGGAAGAAAAACACCAGCAACTTGAAATCTTATCAGCTGATGT
CCAATATCTCGCCAAATCATTGGTCGATCTTGATGAACACAATATGACTC
AAGCAGATCGATTGATTGAACTGATAACCAATCACCCTGATGTTCTCAAT
GTTTATGATAATATAGTCGGTTATCCGAGCTCTACTATCAAAATTGACCA
AACTTTCACCTAGAAATCacagtaaaatgtaaacattgtgttAAAAATGC
TAATTAAATTATTCAAAAGTAGGAAAACAAATCGCAGCACAATGTGTCAA
AAACGCTAATGGATTCGTTCCAAAGTAGAGCAAACATGATGTTCCACCTA
TAATTCAATCACCAAAAAAtatacatttcaaattttttatactTGTTTTA
GTAAAAGTAATGCaatgaaattttatcaaaatagatTAATTTTCAGAATC
TTGCTCGAGAACAATATAAGTCCGATCCCAACTCAAATGGTTTCCAAACA
AGACCCAAGTTTCTGTTTGAATGACTGAGTAATGAATCGAAACTGAATTT
TAAACCAGTAaaaatttgcttgaaaaaggcTTAATATTAGCATGATCTTG
TCATTTCTGGAAATATTAGGGGGGTTATTCCTtatttgtttttaggtttt
tgtaaaatttaggtttcattttcttctaaaaaaatTTTAGGGTCTCTCTA
CTCtggcaataaat
Run BLAST on NCBI

protein sequence of TCONS_00061900-protein

>TCONS_00061900-protein ID=TCONS_00061900-protein|Name=TCONS_00061900-protein|organism=Clytia hemisphaerica|type=polypeptide|length=316bp
MVLLKILKPIQTPLLWRNLQIQNGTLAVVTTCLLCQQQKRYAGHSKWANI
KFKKMHKDNARAKVFGQLSREIIQAVKEKGADPVYNAKLEGLVLKARSSS
MPKERIENSIKNALRSSYEKATQSLFQARGPMKCGLMIDVLAPNVIRTKN
EIKTILKKNDATFISDGSVAFMFDHKGVVTIKDKLSKPSENGGDIVEVVA
DEHAIDQAEEIAIEVGAEDVHFSYNEQLDQRVIQFLCQPLEIQTIRKEME
EKHQQLEILSADVQYLAKSLVDLDEHNMTQADRLIELITNHPDVLNVYDN
IVGYPSSTIKIDQTFT
Run BLAST on NCBI

transcript from alignment at scaffold_361:620735..635822+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061900 ID=TCONS_00061900|Name=TCONS_00061900|organism=Clytia hemisphaerica|type=transcript|length=15088bp|location=Sequence derived from alignment at scaffold_361:620735..635822+ (Clytia hemisphaerica)
AAACAAGGAAACTAACATGATCCCGCTTTCAGAATTAGTCTGATTGATCA
GTTTGGCAATCTTTTATGGACAATATCTACACATAACTGAATTTGATTTC
CTTACTAGTGGCATATCGTTTTATCTTTTAGACTAAAAAAtactaaagaa
aaaaaacattcaatggTATTACTCAAAATCCTGAAACCAATTCAAACACC
ACTGTTATGGCGTAATTTACAAATACAAAATGGTACTTTAGCTGTGGTGA
CAACCTGCTTGTTATGTCAACAGCAGAAACGTTATGCAGGCCATTCGAAA
TGGGCCAAcatcaaattcaagaaaatgcacaaaGATAATGCAAGGGCCAA
AGTTTTCGGACAATTATCACGTGAGATCATACAAGCTGTTAAAGGTAAGG
TAGTAAATATTCTTCATTTGACGAAAACTAGGCAAATAGTACTGGGTACT
TGGTGCTGGTTTCGAGTAACGATATGAggtagaatctggtcattttgtgt
ctcgttttaagaaaacttttacttgtttcgaGTAACGATATGAagtagaa
tctggtcattttgtGTCTCTTTTTANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagaatctggtcatttt
gtgtctctttttaagaaaacttttacttgtttcgaGTAACGATATGAagt
agaatctggtcattttgtgtctctttttaagaaacttttacttgtttcga
GTAACGATATGAagtagaatctggtcattttgtgtctctttttaagaaaa
tttttacttatttCGAGTAACGATTTGAGAtagaatctggtcattttgtg
tctcgttttaagaaaacttttacttgtttcgaCTAACGATATGAAGTAAA
ATCTGGTCATTTTATGTCtcattttaagaaaacttttacttgtttcgaGT
ACCGATATGAAGTAGAATCTGGCCATTTTGTGTCtcgttttaagaaaact
tttacttgtttcgaGTAACGATATGAAGTAAAATCTTCTCATTTTGTGTC
TcgtttaagaaaacttttacttgtttcgaGTAACGATTTGAGAtagaatc
tggtcattttgtgtctcgttttaagaaaatttttacttgTTTCGAGTAAC
GATATGAAGTaaaatcttgtcattttgtgtctcgttttaagaaaattttt
acttgTTTCGAGTAACGATATGAAGTAGAATCTGGCCATTTTGTGTCtcg
ttttaagaaaacttttacttgtttcgaGTAACGATATGAAGTAAAATCTT
CTCATTTTGTGTCTCGTTTTAAGATaacttttacttgtttcgaGTAACGA
TTTGAGAtagaatctggtcattttgtgtctcgttttaagaaaatttttac
ttgTTTCGAGTACCGATATGAAGTAGAATCTGGCCATTTTGTGTCtcgtt
ttaagaaaacttttacttgaTTCAAGTAACGATTTGAGAtagaatctggt
cattttgtgtctcgttttaagaaaatttttacttgTCTCGAGTAACGATA
TGAAGTAAAATCTGGCCATTTTGTGTCtcgttttaagaaaacttttactt
gaTTCGAGTAACGATTTGAGAtagaatctggtcattttgtgtctcgtttt
aagaaaatttttacttgTCTCGAGTAACGATATGAAGTAAAATCTGGTCA
TTTTGTGTCTCTTTTTAAGaaacttttacttgtttcgaGTAACGATATGA
agtagaatctggtcattttgtgtctctttttaagaaaacttttacttgtt
tcgaGTAACGATTTGAGATAGAATCTTGTCATTTTGTGTCtcgttttaag
aaaacttttacttgtttcgaGTAACGATTTGAGAtagaatctggtcattt
tgtgtctcgttttaagaaaatttttacttgTTTCGAGTAACGATATGAag
tagaatctggtcattttgtgtctcgttttaagaaaatttttacttgTCTC
GAGTAACGATATGAagtagaatctggtcattttgtgtctctttttaagaa
aacttttactagTTTCgaCTAACGATATGAAGTAAAATCTGGTCATTTTG
TGTccctttttaagaaaacttttacttgtttcgaCTAACGATATGAAGTA
AAATCTGGTCATTTTGTGTccctttttaagaaaacttttacttgtttcga
CTAACGATATGAAGTAAAATCTGGTCATTTTGTGTccctttttaagaaaa
cttttacttgtttcgaCTAACGATATGAAGTAAAATCTGGTCATTTTGTG
TccctttttaagaaaacttttacttgtttcgaCTAACGATATGAAGTAAA
ATCTGGTCATTTTGTGTccctttttaagaaaacttttacttgtttcgaGT
AACGATATGAagtagaatctggtcattttgtgtctctttttaagaaaact
tttacttgtttcgagtaacgatttgaggtaaaatctggtcattttgtgtc
tctttttaagaaaacttttacttgtttcgaCTAACGATATGAAGTAAAAT
CTGGTCATTTTTTGcctatttataagaaaacttttactagTTTCGAGTTA
CGATATGAAGTAGGATCTTGTCATTTTGTGcctatttataagaaaacttt
tacttgtttcgaGCAACGATTTGAGAtagaatctggtcattttgtGTCTC
GTCTCgagaaaacttttacttgtttcgaGTAGCGATATGAAGTAGGATCT
GGTCATTTTGTGTCTCGTTTTAAGATTACTTGTTTCGAGTAGCGATATGA
agtagaatctggtcattttgtgtctcattttaagaaaacttttacttgtt
tcgaGTAACGATATGAAGTAGGATCTTGTCATTTTGTGTCtcattttaag
aaaacttttacttgtttcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNGACTTCGCTTCCCCGGGGGCGGGCTCATAGAT
CCGCTACAGGGCCTATCCGTATGGAAGTATGATATGCCCTAGGGAAAGCC
AGGTCATCTGGCTTACCCGTATAGAATAAAAAGGGAATCACCTAGGATGA
GCCCGCTAATATTGTCACTTAACAAAGAAACTGTGATTCCCTGACCTGTA
TGGGAGTAAAACCTCGatagaaatcaaaatcaaaatcaaaacaaaaggta
GTAAAAACCCAGGAGTAAAATCTCANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGgagtaa
aatctcaaaaaccaaCAACAGacctcaaaaaatcaaaacaaagtataAGA
GAGGGATACTCTGGTCTGGTTGGTGTATGTAGAGAATTAGCTGCAATAGC
TGAGGATAAACATAAGGCCTAGAGACACTGACAAGGGGAGAGCAGGGGTA
GAAGATAAGGAGAGAAAAAGTCTCTACAGACCTGACTGTGAGTCCACAGT
TACTGACAGCTATATATCTAGTAGATAAAAAAGTGTAGTTTTATGCACCA
GGGATATAGTGTTCTTTAATAGTATTCTGTTTTTATTGATATGCCAGTTC
tctattaaagtctattcacgataagtgtgcactcttttttcatttaccta
taacttttgaaggaattcttcaatctttataaatttggtatcattggaaa
gatNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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CATAAGCAATTATTGAAGTGTTGAAGTCATTTGGGAGGAATGTTCCAATA
TTTGAAGATTGAATGGAGTTCAGTAGGTCTTCAGTATATATATTGAATAA
GTATGGTGACAAAACACTTCCCTGGCGTACACCTTGAGTCAGAGGGAACA
AGGCTGAGAAATTTGAGGCGTAGTGAACGATTGCAGTACCATTTAAGTAG
AGTCTGATTAAAAATGCTATGACTGTGTTGGAAATGTTTTTGTCGGCCAG
TTTTTTGAAGAGTGTATGCCAATTACAACAGTCAAAGGCTTTTTCCGCAT
CGAGACTGCATATGTAGACTGGGGTGTTTCGACTGTTGTAGTATTTTACT
GTGTCCAGAATAATCGTTTCTGCGTGAATCGTTGATGAATTGGAAGTAAA
ACCGAATTGAGTGTTACTGTTTTCCTTTAACGTTGGGCATTTTTCCACAA
TGATGAGTTCTAAAAGCTTTGTAATCATCGGGATCAAGCTTATCCCACGG
TAATTGTTGGGATCGTTAAGGGACTTTTTGTACGATTTCACGAGAGGTAT
AATGATTGACGAGCTAAGGTCTGATGGGATTTCCTCCGCTGCGAAGATGT
CATTTGCTAGACGGGTTAGATAGGTAACGAAGGTAGGTGATGTTGCCAGT
AAGTAGTGCTCCCCTTTTAGTTGAAAAGGATCTCTGGATTTTCCTCGTTT
TAATTTATTCAAACAGTTCATAATTTCAGTTTCAGTAACATAAAAGTCAG
ATTCGCTGGTGTCTATTGAATGGAGATAGCCTTTGAGTTCTTCATTAGAC
GCGGTGTTGTCCACTCCTTCAACGCGGGGAGTATTCAGCAGGTGATCAAA
GTGATTCTTAAATTCGTTGGTTATatctcttttgtccgttttgtTGTTGA
TTGTGAAGAGTTTCTGTGTGGTGTTTTTGTTGAGACGCATTTGGGTCCAA
AATGATTTCGGTTTAAAGCTTTTCATTTGATCTATTTTCACATAGTGATC
AACAGTGGCCTGGTGTTTTGCCTGTTTGACGAGTAATCTGAATTTCTTCC
TGGCAAATTTGTATCTGTTGTATGAGATGCAGGTTGTGTCTTTATTAAAA
TTATCCTCCCTCCAGGTATTGAACATTTTCTGTAAGATATCACGAGCAGA
GCGAAGGTCAGAATTCCACCAGGGTTTGGCAGGGAAGGTGTagaattttt
tctcaatttctgtGAAAGCAGCTGTAGCAGAGTTTTTCAGGATAGAGTGA
AGCTCATCTATCTGGGAATGAAGCTTTGTTTCTGAGGTAAGACAGATGGA
TGCAGCAACTTTCTCGCGGTAGGAATTTACAAACTTTTCATTGTGCCACA
TGTAGTCTGGAATATAATCATTCTCAGTGTCTATGGACGTAGTTAGCAGC
GTAGGCGAGTTTGGTAGTTGAAAGGATGCTGATACTGGAAGGTGATCAGC
GGTGTTGTCTGGATGGGGGTTCATGACAAGGGTATCCGTAAGGAAGTCCA
GTAGTATCGGTTGTATCATGATATGGTCAATGTAAGACTTGTTTGGGAGG
GAAAAATGGTTGTAAGTATAGCAGGGGCCANNNNNNNNNNNNNNNNNNNN
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taagaaaacttttacttgtttcgaGTAACGATATGAagtagaatctggtc
attttttgcctatttataagaaaacttttactagTTTCGAGTTACGATAT
GAAGTAGGATCTTGTCATTTTGTGcctatttataagaaaacttttacttg
tttcgaGTAACGATTTGAGAtagaatctggtcattttgtGTCTCGTCTCg
agaaaacttttacttgtttcgaGTAGCGATATGAAGTAGGATCTGGTCAT
TTTGTGTCtcgttttaagaaaacttttacttgtttcgaGCAACGATATGA
agtagaatctggtcattttgtgtctcgttttaagaaaacttttacttgtt
tcgaGTAACGATATGAagtagaatctggtcattttgtgcctacttataag
aaaacttttactagTTTCGAGTTACAATATGAAGTAGGATCTTGTCATTT
TGTGcctatttataagaaaacttttacttgtttcgaGCAACGATTTGAGG
TAAAATCTGGTCATTTTGTGtctctttttaagaaaacttttacttgtttc
gaCTAACGATATGAAGTAAAATCTGGTCATTTTGTGTCtcattttaagaa
aacttttacttgtttcgaGTAACGATATGAagtagaatctggtcattttT
TGTCtcgttttaagaaaacttttacttgtttcgaGTAACGATATGAAGTA
AAATCTTCTCATTTTGTGTCTcgtttaagaaaacttttacttgtttcgaG
CAACGATATGAAATAAAATCTTCTCATTTTGTGTCtcgttttaagaaaac
ttttacttgttttaAGTAACAACATGAggtagaatctggtcattttgtgt
cttgttttaagaaaacttttacttgtttcgagtaacgatttgaggtagaa
tcttgtcattttgtgtctcgttttaagaaaacttttaattgTTTCGAGTA
AAGATATGAAGTAAAATCTGGTCACGTTGTGtatctttttaagaaaactt
ataCTAGTTTCAAAGCTCTATCAAAGCTCTCATAAATTTTATCTTTTGTT
GTAGAATGGGTCGTAAATTGTTCTCTAAAAGATTTCACACTCTTGAAAAT
TCGTACTGAATATTCCTTTCTTGTGAGGTATCTCTGTTAACCATAATCAT
TTTTCGACAAATCTGGTCCGAAAAGATCCATCCGTTTTGAGCTTGTCTAG
AGGTTGTATTTAGCAGAGAACCCCAAATCGAAGTGATAACAAAACACGAT
ATGTTCTCCTAATTTTCAAGCAGCAGagttaaattttattttgttttcaa
tattttatNACAAAACACGATATGTTCTCCAAATTTTCGGGCAGTGaagt
taaattttattttgttttcaatatttACAGAGAAAGGTGCTGATCCAGTT
TACAATGCGAAGTTAGAGGGTCTGGTGTTGAAAGCAAGATCCTCAAGCAT
GCCAAAAGAACGCATcgaaaattcaatcaaaaatgcTTTAAGGGTAATAT
ATCTTTTCATGGTTTGTCAGGAGAATCTTCAAGGTTTTATCGAGATCCTC
TATCTCGAGTTCGAAAGGGACCGAAAATTGGTTCGAACTTTCGAGATATA
GAGAGGAATTTAACCTATAACAATGTTTAAGCAACTGGCCTTCTTCAATT
AAGATATTCCACTCGAAATTACATCTCCATCTTTCCCAGAGCTCTGNTCG
AGTTCGAAAGGGACCGAAAATTGGTTCGAACTTTCGAGATATAGAGAGGA
ATTTAACCTATAACAATGTTTAAGCAACTGGCCTTCTTCTATTAAGATAT
TCCACTCGAAATTACATCCCCATCTTTCCCAGAGCTCCTACGAGAAAGCC
ACGCAATCGCTATTTCAAGCAAGGGGACCCATGAAATGTGGTCTTATGAT
CGACGTCTTGGCGCCAAATGTCATTCGAACGaaaaacgaaatcaaaacaa
tccTAAAGAAGAACGAGTAGGTATCCGTTTTCTTGAACAGGGAGTGGTCA
AGCACGTGATTACTACAACAAAATCAGCCGACTGCACGAAAATATGGTTT
TTTGTATAAAGTACACGACACCAACTCTCAATTTAACACCATGCATCGAT
CACAATAATGTGCCGTATTGAAATAAAagacttaaaaattaaaaattgta
acaaatCTGCAGCCTTGTGAATTACTTGCGTGTATAGTGAACTGTATTTG
ACCTATAATCTGTAGACAGGGAAAGTTGCCTTTTTTTATGATTACTAAAT
CATCTGTACCCATAAGATGGCCGAAAAAGATTTTCTGACGCCGCCTCCAA
CAAGCATCAGGAATACCAAAATACCCAACCAATCACccctttattatttt
atttcagtGCGACATTCATTTCTGACGGTTCTGTTGCCTTCATGTTCGAT
CATAAAGGTACCATTGACCATCTGTTTTACTTCGACCTGATCTCTACAAT
CTCTATTGTTTAAAAACGTAACAACAAGATTGGATTCATTTTCGTCAGAA
CTGTTTTCGGTTCCTCGAACTAATTTTCATCGTTAAATCTTTGACGAAAt
agatatttttcatttctgagAAGTACCtacttgaaattttgtaatatttc
agctttggaaaaagaaaaataggtCAAGTTTTTTTGTAGGTTCTTTCAGA
GATCTGTCTTTTCAGCGTTCCAGACGGATACTTTTTATCGGATCGCAAAA
AgttgcctaattttttttttctttcaacctTAAGGACGAGGGACTGGTTA
TCATTCGTTAGGGTCATGGTTGGAGCTTGAGAGTATCTCGGTATTTAGTC
ATTTTGAATTGCGGAATCTGCTCTGCTACGACAGTTatcaaaacttagaa
aatttgttagaaaatgagaaacaaaGTCTCAGACAGTCATAAAAGAGAAA
GATAGGGTATGAAATATGAAACGAAAAAAGATGACTTTAGGCGATCCGAT
ATAACCTCTTCCACAATCGACCTCGACCAGGCAACCGTTAGAAATTATGC
TGAAAAACCTTAAATTTTTCTAGGAAAAGTTTATAAGTCACAGGCCGCAG
GTTGTTCAATATGTTGTAACTTGTAACCCCTTGGTCTAGTAATGGTTTTG
GCTCACAAATATATGATTGTCTTTAACTCACGGATCGTTTCACTAATAAG
ATTAAAACCACGGTTATTTTTCTCAAACGCTGAAGACATTGCGATTGTTT
GATTTGCAGGTGTGGTGACAATCAAAGATAAATTGTCCAAACCTTCTGAG
AACGGTGGTGATATCGTTGAAGTCGTGGCTGATGAACATGCGATCGATCA
AGTATATTGAATTTGATAGTGTACCTTTATTAAATTTCACAGTTGAGAGG
CAATAACCTGGGAGAGCTTGAAGATCTTTCCTCTAGCCTTCGACTTGAAA
CTCgatagttgaaagttttttttttcaaataagctATTAAAAGAAGGGAC
TAGTGGTTCAAATCTGTCCGCTATGTATAATACATGAAAAAATGCATCAT
TTTGTGTTATCACTTCACATCGATTTGAAGTTCATTGATTTTAAGCGTGC
ACTTTTTTTTGCTAACATGTggaaacatgaaaatatttcactctatagta
agaaaaatattttgtggaGTAGCTTTCACATAGGCgcaaaaaagagtgca
cacttaaaatgaattgaattgatttgaatttctttctttcGTACAGGCGG
AAGAGATAGCGATCGAAGTAGGTGCAGAAGACGTCCATTTTTCGTACAAT
GAACAACTTGATCAACGAGTCATTCAGGTATGAGTTTTGTATCCTCTCTA
CAATACATATTTAGTCTCATTGACTGGACAAACCACCACTAAGCACTGTT
TCAGCTCATTTGAAATCGAGTCTTTCGTTGAATTCATTAAATTAACGgaa
agcgaccgtagtgcagtggtagagcatccggctatgagccgggtcatacc
aaagattcccaaaatggtacttgatacctctctgATTGaagctcagcaat
taagagaagggtcaagggtaagtggggcaatccagggagaaagagtgccA
CCCTCTCCTACCTtagggtagatagctatcgaaagaggagccttcttGTC
GCCTCGGACTGCGgtcacagacttacttactacaaGTGGAAAGCAAAAGA
TGGAAATTAATCTCAACGACTTCTTTCACCTCTCATAGTTCTTATGTCAA
CCATTGGAGATTCAAACTATTCGTAAGGAGATGGAAGAAAAACACCAGCA
ACTTGAAATCTTATCAGCTGATGTCCAATATCTCGCCAAATCATTGGTCG
ATCTTGATGAACACAATATGACTCAAGCAGATCGATTGATTGAACTGATA
ACCAATCACCCTGATGTTCTCAATGTTTATGATAATATAGTCGGTTATCC
GAGCTCTACTATCAAAATTGACCAAACTTTCACCTAGAAATCacagtaaa
atgtaaacattgtgttAAAAATGCTAATTAAATTATTCAAAAGTAGGAAA
ACAAATCGCAGCACAATGTGTCAAAAACGCTAATGGATTCGTTCCAAAGT
AGAGCAAACATGATGTTCCACCTATAATTCAATCACCAAAAAAtatacat
ttcaaattttttatactTGTTTTAGTAAAAGTAATGCaatgaaattttat
caaaatagatTAATTTTCAGAATCTTGCTCGAGAACAATATAAGTCCGAT
CCCAACTCAAATGGTTTCCAAACAAGACCCAAGTTTCTGTTTGAATGACT
GAGTAATGAATCGAAACTGAATTTTAAACCAGTAaaaatttgcttgaaaa
aggcTTAATATTAGCATGATCTTGTCATTTCTGGAAATATTAGGGGGGTT
ATTCCTtatttgtttttaggtttttgtaaaatttaggtttcattttcttc
taaaaaaatTTTAGGGTCTCTCTACTCtggcaataaat

Coding sequence (CDS) from alignment at scaffold_361:620735..635822+

>TCONS_00061900 ID=TCONS_00061900|Name=TCONS_00061900|organism=Clytia hemisphaerica|type=CDS|length=6657bp|location=Sequence derived from alignment at scaffold_361:620735..635822+ (Clytia hemisphaerica)
atggTATTACTCAAAATCCTGAAACCAATTCAAACACCACTGTTATGGCG
TAATTTACAAATACAAAATGGTACTTTAGCTGTGGTGACAACCTGCTTGT
TATGTCAACAGCAGAAACGTTATGCAGGCCATTCGAAATGGGCCAAcatc
aaattcaagaaaatgcacaaaGATAATGCAAGGGCCAAAGTTTTCGGACA
ATTATCACGTGAGATCATACAAGCTGTTAAAGAGAAAGGTGCTGATCCAG
TTTACAATGCGAAGTTAGAGGGTCTGGTGTTGAAAGCAAGATCCTCAAGC
ATGCCAAAAGAACGCATcgaaaattcaatcaaaaatgcTTTAAGGAGCTC
CTACGAGAAAGCCACGCAATCGCTATTTCAAGCAAGGGGACCCATGAAAT
GTGGTCTTATGATCGACGTCTTGGCGCCAAATGTCATTCGAACGaaaaac
gaaatcaaaacaatccTAAAGAAGAACGAtGCGACATTCATTTCTGACGG
TTCTGTTGCCTTCATGTTCGATCATAAAGGTGTGGTGACAATCAAAGATA
AATTGTCCAAACCTTCTGAGAACGGTGGTGATATCGTTGAAGTCGTGGCT
GATGAACATGCGATCGATCAAGCGGAAGAGATAGCGATCGAAGTAGGTGC
AGAAGACGTCCATTTTTCGTACAATGAACAACTTGATCAACGAGTCATTC
AGTTCTTATGTCAACCATTGGAGATTCAAACTATTCGTAAGGAGATGGAA
GAAAAACACCAGCAACTTGAAATCTTATCAGCTGATGTCCAATATCTCGC
CAAATCATTGGTCGATCTTGATGAACACAATATGACTCAAGCAGATCGAT
TGATTGAACTGATAACCAATCACCCTGATGTTCTCAATGTTTATGATAAT
ATAGTCGGTTATCCGAGCTCTACTATCAAAATTGACCAAACTTTCACCTA
GatggTATTACTCAAAATCCTGAAACCAATTCAAACACCACTGTTATGGC
GTAATTTACAAATACAAAATGGTACTTTAGCTGTGGTGACAACCTGCTTG
TTATGTCAACAGCAGAAACGTTATGCAGGCCATTCGAAATGGGCCAAcat
caaattcaagaaaatgcacaaaGATAATGCAAGGGCCAAAGTTTTCGGAC
AATTATCACGTGAGATCATACAAGCTGTTAAAGAGAAAGGTGCTGATCCA
GTTTACAATGCGAAGTTAGAGGGTCTGGTGTTGAAAGCAAGATCCTCAAG
CATGCCAAAAGAACGCATcgaaaattcaatcaaaaatgcTTTAAGGAGCT
CCTACGAGAAAGCCACGCAATCGCTATTTCAAGCAAGGGGACCCATGAAA
TGTGGTCTTATGATCGACGTCTTGGCGCCAAATGTCATTCGAACGaaaaa
cgaaatcaaaacaatccTAAAGAAGAACGAtGCGACATTCATTTCTGACG
GTTCTGTTGCCTTCATGTTCGATCATAAAGGTGTGGTGACAATCAAAGAT
AAATTGTCCAAACCTTCTGAGAACGGTGGTGATATCGTTGAAGTCGTGGC
TGATGAACATGCGATCGATCAAGCGGAAGAGATAGCGATCGAAGTAGGTG
CAGAAGACGTCCATTTTTCGTACAATGAACAACTTGATCAACGAGTCATT
CAGTTCTTATGTCAACCATTGGAGATTCAAACTATTCGTAAGGAGATGGA
AGAAAAACACCAGCAACTTGAAATCTTATCAGCTGATGTCCAATATCTCG
CCAAATCATTGGTCGATCTTGATGAACACAATATGACTCAAGCAGATCGA
TTGATTGAACTGATAACCAATCACCCTGATGTTCTCAATGTTTATGATAA
TATAGTCGGTTATCCGAGCTCTACTATCAAAATTGACCAAACTTTCACCT
AGatggTATTACTCAAAATCCTGAAACCAATTCAAACACCACTGTTATGG
CGTAATTTACAAATACAAAATGGTACTTTAGCTGTGGTGACAACCTGCTT
GTTATGTCAACAGCAGAAACGTTATGCAGGCCATTCGAAATGGGCCAAca
tcaaattcaagaaaatgcacaaaGATAATGCAAGGGCCAAAGTTTTCGGA
CAATTATCACGTGAGATCATACAAGCTGTTAAAGAGAAAGGTGCTGATCC
AGTTTACAATGCGAAGTTAGAGGGTCTGGTGTTGAAAGCAAGATCCTCAA
GCATGCCAAAAGAACGCATcgaaaattcaatcaaaaatgcTTTAAGGAGC
TCCTACGAGAAAGCCACGCAATCGCTATTTCAAGCAAGGGGACCCATGAA
ATGTGGTCTTATGATCGACGTCTTGGCGCCAAATGTCATTCGAACGaaaa
acgaaatcaaaacaatccTAAAGAAGAACGAtGCGACATTCATTTCTGAC
GGTTCTGTTGCCTTCATGTTCGATCATAAAGGTGTGGTGACAATCAAAGA
TAAATTGTCCAAACCTTCTGAGAACGGTGGTGATATCGTTGAAGTCGTGG
CTGATGAACATGCGATCGATCAAGCGGAAGAGATAGCGATCGAAGTAGGT
GCAGAAGACGTCCATTTTTCGTACAATGAACAACTTGATCAACGAGTCAT
TCAGTTCTTATGTCAACCATTGGAGATTCAAACTATTCGTAAGGAGATGG
AAGAAAAACACCAGCAACTTGAAATCTTATCAGCTGATGTCCAATATCTC
GCCAAATCATTGGTCGATCTTGATGAACACAATATGACTCAAGCAGATCG
ATTGATTGAACTGATAACCAATCACCCTGATGTTCTCAATGTTTATGATA
ATATAGTCGGTTATCCGAGCTCTACTATCAAAATTGACCAAACTTTCACC
TAGatggTATTACTCAAAATCCTGAAACCAATTCAAACACCACTGTTATG
GCGTAATTTACAAATACAAAATGGTACTTTAGCTGTGGTGACAACCTGCT
TGTTATGTCAACAGCAGAAACGTTATGCAGGCCATTCGAAATGGGCCAAc
atcaaattcaagaaaatgcacaaaGATAATGCAAGGGCCAAAGTTTTCGG
ACAATTATCACGTGAGATCATACAAGCTGTTAAAGAGAAAGGTGCTGATC
CAGTTTACAATGCGAAGTTAGAGGGTCTGGTGTTGAAAGCAAGATCCTCA
AGCATGCCAAAAGAACGCATcgaaaattcaatcaaaaatgcTTTAAGGAG
CTCCTACGAGAAAGCCACGCAATCGCTATTTCAAGCAAGGGGACCCATGA
AATGTGGTCTTATGATCGACGTCTTGGCGCCAAATGTCATTCGAACGaaa
aacgaaatcaaaacaatccTAAAGAAGAACGAtGCGACATTCATTTCTGA
CGGTTCTGTTGCCTTCATGTTCGATCATAAAGGTGTGGTGACAATCAAAG
ATAAATTGTCCAAACCTTCTGAGAACGGTGGTGATATCGTTGAAGTCGTG
GCTGATGAACATGCGATCGATCAAGCGGAAGAGATAGCGATCGAAGTAGG
TGCAGAAGACGTCCATTTTTCGTACAATGAACAACTTGATCAACGAGTCA
TTCAGTTCTTATGTCAACCATTGGAGATTCAAACTATTCGTAAGGAGATG
GAAGAAAAACACCAGCAACTTGAAATCTTATCAGCTGATGTCCAATATCT
CGCCAAATCATTGGTCGATCTTGATGAACACAATATGACTCAAGCAGATC
GATTGATTGAACTGATAACCAATCACCCTGATGTTCTCAATGTTTATGAT
AATATAGTCGGTTATCCGAGCTCTACTATCAAAATTGACCAAACTTTCAC
CTAGatggTATTACTCAAAATCCTGAAACCAATTCAAACACCACTGTTAT
GGCGTAATTTACAAATACAAAATGGTACTTTAGCTGTGGTGACAACCTGC
TTGTTATGTCAACAGCAGAAACGTTATGCAGGCCATTCGAAATGGGCCAA
catcaaattcaagaaaatgcacaaaGATAATGCAAGGGCCAAAGTTTTCG
GACAATTATCACGTGAGATCATACAAGCTGTTAAAGAGAAAGGTGCTGAT
CCAGTTTACAATGCGAAGTTAGAGGGTCTGGTGTTGAAAGCAAGATCCTC
AAGCATGCCAAAAGAACGCATcgaaaattcaatcaaaaatgcTTTAAGGA
GCTCCTACGAGAAAGCCACGCAATCGCTATTTCAAGCAAGGGGACCCATG
AAATGTGGTCTTATGATCGACGTCTTGGCGCCAAATGTCATTCGAACGaa
aaacgaaatcaaaacaatccTAAAGAAGAACGAtGCGACATTCATTTCTG
ACGGTTCTGTTGCCTTCATGTTCGATCATAAAGGTGTGGTGACAATCAAA
GATAAATTGTCCAAACCTTCTGAGAACGGTGGTGATATCGTTGAAGTCGT
GGCTGATGAACATGCGATCGATCAAGCGGAAGAGATAGCGATCGAAGTAG
GTGCAGAAGACGTCCATTTTTCGTACAATGAACAACTTGATCAACGAGTC
ATTCAGTTCTTATGTCAACCATTGGAGATTCAAACTATTCGTAAGGAGAT
GGAAGAAAAACACCAGCAACTTGAAATCTTATCAGCTGATGTCCAATATC
TCGCCAAATCATTGGTCGATCTTGATGAACACAATATGACTCAAGCAGAT
CGATTGATTGAACTGATAACCAATCACCCTGATGTTCTCAATGTTTATGA
TAATATAGTCGGTTATCCGAGCTCTACTATCAAAATTGACCAAACTTTCA
CCTAGatggTATTACTCAAAATCCTGAAACCAATTCAAACACCACTGTTA
TGGCGTAATTTACAAATACAAAATGGTACTTTAGCTGTGGTGACAACCTG
CTTGTTATGTCAACAGCAGAAACGTTATGCAGGCCATTCGAAATGGGCCA
AcatcaaattcaagaaaatgcacaaaGATAATGCAAGGGCCAAAGTTTTC
GGACAATTATCACGTGAGATCATACAAGCTGTTAAAGAGAAAGGTGCTGA
TCCAGTTTACAATGCGAAGTTAGAGGGTCTGGTGTTGAAAGCAAGATCCT
CAAGCATGCCAAAAGAACGCATcgaaaattcaatcaaaaatgcTTTAAGG
AGCTCCTACGAGAAAGCCACGCAATCGCTATTTCAAGCAAGGGGACCCAT
GAAATGTGGTCTTATGATCGACGTCTTGGCGCCAAATGTCATTCGAACGa
aaaacgaaatcaaaacaatccTAAAGAAGAACGAtGCGACATTCATTTCT
GACGGTTCTGTTGCCTTCATGTTCGATCATAAAGGTGTGGTGACAATCAA
AGATAAATTGTCCAAACCTTCTGAGAACGGTGGTGATATCGTTGAAGTCG
TGGCTGATGAACATGCGATCGATCAAGCGGAAGAGATAGCGATCGAAGTA
GGTGCAGAAGACGTCCATTTTTCGTACAATGAACAACTTGATCAACGAGT
CATTCAGTTCTTATGTCAACCATTGGAGATTCAAACTATTCGTAAGGAGA
TGGAAGAAAAACACCAGCAACTTGAAATCTTATCAGCTGATGTCCAATAT
CTCGCCAAATCATTGGTCGATCTTGATGAACACAATATGACTCAAGCAGA
TCGATTGATTGAACTGATAACCAATCACCCTGATGTTCTCAATGTTTATG
ATAATATAGTCGGTTATCCGAGCTCTACTATCAAAATTGACCAAACTTTC
ACCTAGatggTATTACTCAAAATCCTGAAACCAATTCAAACACCACTGTT
ATGGCGTAATTTACAAATACAAAATGGTACTTTAGCTGTGGTGACAACCT
GCTTGTTATGTCAACAGCAGAAACGTTATGCAGGCCATTCGAAATGGGCC
AAcatcaaattcaagaaaatgcacaaaGATAATGCAAGGGCCAAAGTTTT
CGGACAATTATCACGTGAGATCATACAAGCTGTTAAAGAGAAAGGTGCTG
ATCCAGTTTACAATGCGAAGTTAGAGGGTCTGGTGTTGAAAGCAAGATCC
TCAAGCATGCCAAAAGAACGCATcgaaaattcaatcaaaaatgcTTTAAG
GAGCTCCTACGAGAAAGCCACGCAATCGCTATTTCAAGCAAGGGGACCCA
TGAAATGTGGTCTTATGATCGACGTCTTGGCGCCAAATGTCATTCGAACG
aaaaacgaaatcaaaacaatccTAAAGAAGAACGAtGCGACATTCATTTC
TGACGGTTCTGTTGCCTTCATGTTCGATCATAAAGGTGTGGTGACAATCA
AAGATAAATTGTCCAAACCTTCTGAGAACGGTGGTGATATCGTTGAAGTC
GTGGCTGATGAACATGCGATCGATCAAGCGGAAGAGATAGCGATCGAAGT
AGGTGCAGAAGACGTCCATTTTTCGTACAATGAACAACTTGATCAACGAG
TCATTCAGTTCTTATGTCAACCATTGGAGATTCAAACTATTCGTAAGGAG
ATGGAAGAAAAACACCAGCAACTTGAAATCTTATCAGCTGATGTCCAATA
TCTCGCCAAATCATTGGTCGATCTTGATGAACACAATATGACTCAAGCAG
ATCGATTGATTGAACTGATAACCAATCACCCTGATGTTCTCAATGTTTAT
GATAATATAGTCGGTTATCCGAGCTCTACTATCAAAATTGACCAAACTTT
CACCTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038816XLOC_038816Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061900-proteinTCONS_00061900-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061900-exon-scaffold_361-1491911889:620735..621128TCONS_00061900-exon-scaffold_361-1491911889:620735..621128Clytia hemisphaericaexon
TCONS_00061900-exon-scaffold_361-1510915933:620735..621128TCONS_00061900-exon-scaffold_361-1510915933:620735..621128Clytia hemisphaericaexon
TCONS_00061900-exon-scaffold_361-1575043694:620735..621128TCONS_00061900-exon-scaffold_361-1575043694:620735..621128Clytia hemisphaericaexon
TCONS_00061900-exon-scaffold_361-1491911889:632265..632377TCONS_00061900-exon-scaffold_361-1491911889:632265..632377Clytia hemisphaericaexon
TCONS_00061900-exon-scaffold_361-1510915933:632265..632377TCONS_00061900-exon-scaffold_361-1510915933:632265..632377Clytia hemisphaericaexon
TCONS_00061900-exon-scaffold_361-1575043694:632265..632377TCONS_00061900-exon-scaffold_361-1575043694:632265..632377Clytia hemisphaericaexon
TCONS_00061900-exon-scaffold_361-1491911889:632717..632850TCONS_00061900-exon-scaffold_361-1491911889:632717..632850Clytia hemisphaericaexon
TCONS_00061900-exon-scaffold_361-1510915933:632717..632850TCONS_00061900-exon-scaffold_361-1510915933:632717..632850Clytia hemisphaericaexon
TCONS_00061900-exon-scaffold_361-1575043694:632717..632850TCONS_00061900-exon-scaffold_361-1575043694:632717..632850Clytia hemisphaericaexon
TCONS_00061900-exon-scaffold_361-1491911889:633242..633291TCONS_00061900-exon-scaffold_361-1491911889:633242..633291Clytia hemisphaericaexon
TCONS_00061900-exon-scaffold_361-1510915933:633242..633291TCONS_00061900-exon-scaffold_361-1510915933:633242..633291Clytia hemisphaericaexon
TCONS_00061900-exon-scaffold_361-1575043694:633242..633291TCONS_00061900-exon-scaffold_361-1575043694:633242..633291Clytia hemisphaericaexon
TCONS_00061900-exon-scaffold_361-1491911889:634094..634185TCONS_00061900-exon-scaffold_361-1491911889:634094..634185Clytia hemisphaericaexon
TCONS_00061900-exon-scaffold_361-1510915933:634094..634185TCONS_00061900-exon-scaffold_361-1510915933:634094..634185Clytia hemisphaericaexon
TCONS_00061900-exon-scaffold_361-1575043694:634094..634185TCONS_00061900-exon-scaffold_361-1575043694:634094..634185Clytia hemisphaericaexon
TCONS_00061900-exon-scaffold_361-1491911889:634581..634661TCONS_00061900-exon-scaffold_361-1491911889:634581..634661Clytia hemisphaericaexon
TCONS_00061900-exon-scaffold_361-1510915933:634581..634661TCONS_00061900-exon-scaffold_361-1510915933:634581..634661Clytia hemisphaericaexon
TCONS_00061900-exon-scaffold_361-1575043694:634581..634661TCONS_00061900-exon-scaffold_361-1575043694:634581..634661Clytia hemisphaericaexon
TCONS_00061900-exon-scaffold_361-1491911889:635073..635822TCONS_00061900-exon-scaffold_361-1491911889:635073..635822Clytia hemisphaericaexon
TCONS_00061900-exon-scaffold_361-1510915933:635073..635822TCONS_00061900-exon-scaffold_361-1510915933:635073..635822Clytia hemisphaericaexon
TCONS_00061900-exon-scaffold_361-1575043694:635073..635822TCONS_00061900-exon-scaffold_361-1575043694:635073..635822Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:620735..635822 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.746	25.1655	32.5075	31.1601	12.6335	9.84859	18.4072	18.0836	21.1722	18.8716	29.4201	17.2879	15.7861	17.3532	12.8902	16.5259	15.885	18.3994	6.17376	8.11763	16.7237	16.3621	16.0107	17.2935	21.6616	25.8654	18.2816	17.5522	14.8542	12.8497
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR026564Transcrip_reg_TACO1-like_dom3
IPR017856Integrase_Zn-bd_dom-like_N
IPR002876Transcrip_reg_TACO1-like
IPR029072YebC-like
Blast
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BLAST of TCONS_00061900 vs. Swiss-Prot (Human)
Match: TACO1 (Translational activator of cytochrome c oxidase 1 OS=Homo sapiens GN=TACO1 PE=1 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.219e-33
Identity = 87/263 (33.08%), Postives = 141/263 (53.61%), Query Frame = 1 
Query:  286 AGHSKWANIKFKKMHKDNARAKVFGQLSREIIQAVKEKGADPVYNAKLEGLVLKARSSSMPKERIENSIKNALRSSYEKATQSLFQARGPMKCGLMIDVLAPNVIRTKNEIKTILKKNDATFISDGSVAFMFDHKGVVTIKDKLSKPSENGGDIVEVVADEHA---IDQAEEIAIEVGAEDVHFSYNEQLDQRVIQFLCQPLEIQTIRKEMEEKHQQLEILSADVQYLAKSLVDLDEHNMTQADRLIELITNHPDVLNVYDNI 1065
            AGH+KW+ ++  K  KD  R+++F +L   I  AVKE G +P +N+ L  ++   RS  MPK  IE     AL+    K T  L++ RGP    L+I+ L+ +  + + +I+ IL KN             FD KGV+               +VEV   E     +++A E+AIE GAEDV  + +E+ ++ V +F+C    +  +RK+++     L  +S  ++++  S V L E ++ QA  LI+ ++NH DV++VYDNI
Sbjct:   58 AGHNKWSKVRHIKGPKDVERSRIFSKLCLNIRLAVKEGGPNPEHNSNLANILEVCRSKHMPKSTIE----TALKMEKSKDTYLLYEGRGPGGSSLLIEALSNSSHKCQADIRHILNKNGGVMAV--GARHSFDKKGVI---------------VVEVEDREKKAVNLERALEMAIEAGAEDVKETEDEE-ERNVFKFICDASSLHQVRKKLDS--LGLCSVSCALEFIPNSKVQLAEPDLEQAAHLIQALSNHEDVIHVYDNI 296
The following BLAST results are available for this feature:
BLAST of TCONS_00061900 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TACO11.219e-3333.08Translational activator of cytochrome c oxidase 1 ... [more]
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