|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061893 ID=TCONS_00061893|Name=TCONS_00061893|organism=Clytia hemisphaerica|type=transcript|length=5528bpRun BLAST on NCBI transcript from alignment at scaffold_361:592586..620646+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061893 ID=TCONS_00061893|Name=TCONS_00061893|organism=Clytia hemisphaerica|type=transcript|length=28061bp|location=Sequence derived from alignment at scaffold_361:592586..620646+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00061893 vs. Swiss-Prot (Human)
Match: MDR1 (Multidrug resistance protein 1 OS=Homo sapiens GN=ABCB1 PE=1 SV=3) HSP 1 Score: 1145.18 bits (2961), Expect = 0.000e+0 Identity = 626/1273 (49.18%), Postives = 852/1273 (66.93%), Query Frame = 1
Query: 160 ISFGQLFSYADSVDYLLMTVATIASIGNGIAQPASFVVFGQLIEKFVKFGA---------------SPGAF-DISDDMKDFAIIYVIIGACMFVCSFFQAGFWSMTSIRQIHKIRLSFFDSILRQDIGWYDVEESGSLTTRLTDDLIKVQAGMGEKIGMALQALAMXXXXXXXXXXYSWELTLVILAVTPALIIVGAIFGKIMGNMSESEQTSYAEAGGIAEEAFSSIRTVVAFCGEQDTIKRYSEKLKDAERAGVKKALLLGGSMGAFHIVIFGCYALAFWHGSQMVADLKINAGELLIVFFCVMIGAAQLGQVGPSFEAISVSRGAAFKVFEIIKRVPTIDCTSDKGTKLESVTGNIQFNDVHFHYPSREEMKILDGFNLTIEEGTTVALVGESGCGKSTCIKLVQRFYDVMQGSVTLDGHDLKTLNVNWLRKNIGVVSQEPVLFDMTITENIKFGAIHQATQNEVEEAAKMANAHDFISKLPNKYNTNVGEGGAQLSGGQKQRIAIARALIRNPKILLFDEATSALDTESEAIVQAALDRASKGRTTIIIAHRLSTVRNADKIVAVKEGKVAEQGKHDVLMAAKGVYHQLVLLQTMVEEVAGELDSEELQNMSEAEKEKAVQAKLMRSLSTLSNESDEGKVLADKFQRQLSSETSIRKSLRNKKESDLAVSPKKSGHSTKXXXXXXXXXXXXXXXXXXXXXMGRVMKLNAPEWPYMAVGSFFAALVGAFPVLFAFILSELIEVFA--NPPEKIREDSKLWAXXXXXXXXXXXXXXXXXXXXXXKAGEVLTTRLRTKVFTALLRQNISYFDDPKNGTGHLTARLATDASNVKGATCSRLNIMIQTIVMGITALTIAFYYSWKXXXXXXXXXXXXXXXXXXHMKVFTNFAADESSNLIDASAIATEAIMNIRTVASIGKEKYFLAKYEEKLDEPFKKSVRNSNIFGLTFGTSTSXXXXXXXXXXXXGGKLVQDGDLVFDDMFKVILSTVFGAMIAGQIASMAPDYLAAKVSAARCFAILDHEPEIDSYSTEGKKLDNVNGNINFQDVAFNYPNRPDVTVLKSLSFDIKSGQKIALVGSSGCGKSTSIGLLERFYNPKEGRISIDGHEVKSFNLKWLRQQLGLVSQEPVLFARSIRDNIVYGLD-RQVSDEEITKVCQNANVHSFIHSLPMGYDTLVGDKGTLISGGQKQRIAIARALIRDPKIMLLDEATSALDSESEKIVQNALDVAMEGRTSIIIAHRLSTIQNSDVICVIQDGGVVEMGTHQELIAKKG 3921
+S +F Y++ +D L M V T+A+I +G P +VFG++ + F G G F ++ +DM +A Y IGA + V ++ Q FW + + RQIHKIR FF +I+RQ+IGW+DV + G L TRLTDD+ K+ G+G+KIGM Q++A FF GF +GF W+LTLVILA++P L + A++ KI+ + ++ E +YA+AG +AEE ++IRTV+AF G++ ++RY++ L++A+R G+KKA+ S+GA ++I+ YALAFW+G+ +V + + G++L VFF V+IGA +GQ PS EA + +RGAA+++F+II P+ID S G K +++ GN++F +VHF YPSR+E+KIL G NL ++ G TVALVG SGCGKST ++L+QR YD +G V++DG D++T+NV +LR+ IGVVSQEPVLF TI ENI++G T +E+E+A K ANA+DFI KLP+K++T VGE GAQLSGGQKQRIAIARAL+RNPKILL DEATSALDTESEA+VQ ALD+A KGRTTI+IAHRLSTVRNAD I +G + E+G HD LM KG+Y +LV +QT EV EL+N ++ K + + +L SN+S + L + S R+S+R + D +S K++ + P R+MKLN EWPY VG F A + G FA I S++I VF + PE R++S L++LLFL LG + F F + FGKAGE+LT RLR VF ++LRQ++S+FDDPKN TG LT RLA DA+ VKGA SRL ++ Q I T + I+F Y W+LTLL+L P++ AG MK+ + A + L + IATEAI N RTV S+ +E+ F Y + L P++ S+R ++IFG+TF + ++M + A F G LV + F+D+ V + VFGAM GQ++S APDY AK+SAA I++ P IDSYSTEG + + GN+ F +V FNYP RPD+ VL+ LS ++K GQ +ALVGSSGCGKST + LLERFY+P G++ +DG E+K N++WLR LG+VSQEP+LF SI +NI YG + R VS EEI + + AN+H+FI SLP Y T VGDKGT +SGGQKQRIAIARAL+R P I+LLDEATSALD+ESEK+VQ ALD A EGRT I+IAHRLSTIQN+D+I V Q+G V E GTHQ+L+A+KG
Sbjct: 34 VSVFSMFRYSNWLDKLYMVVGTLAAIIHGAGLPLMMLVFGEMTDIFANAGNLEDLMSNITNRSDINDTGFFMNLEEDMTRYAYYYSGIGAGVLVAAYIQVSFWCLAAGRQIHKIRKQFFHAIMRQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQSMATFFTGFIVGFTRGWKLTLVILAISPVLGLSAAVWAKILSSFTDKELLAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNKNLEEAKRIGIKKAITANISIGAAFLLIYASYALAFWYGTTLVLSGEYSIGQVLTVFFSVLIGAFSVGQASPSIEAFANARGAAYEIFKIIDNKPSIDSYSKSGHKPDNIKGNLEFRNVHFSYPSRKEVKILKGLNLKVQSGQTVALVGNSGCGKSTTVQLMQRLYDPTEGMVSVDGQDIRTINVRFLREIIGVVSQEPVLFATTIAENIRYGR-ENVTMDEIEKAVKEANAYDFIMKLPHKFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQVALDKARKGRTTIVIAHRLSTVRNADVIAGFDDGVIVEKGNHDELMKEKGIYFKLVTMQTAGNEV-------ELENAADESKSE------IDALEMSSNDS----------RSSLIRKRSTRRSVRGSQAQDRKLSTKEALDES-----------------IPPVSFWRIMKLNLTEWPYFVVGVFCAIINGGLQPAFAIIFSKIIGVFTRIDDPETKRQNSNLFSLLFLALGIISFITFFLQGFTFGKAGEILTKRLRYMVFRSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGAIGSRLAVITQNIANLGTGIIISFIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTQEQKFEHMYAQSLQVPYRNSLRKAHIFGITFSFTQAMMYFSYAGCFRFGAYLVAHKLMSFEDVLLVFSAVVFGAMAVGQVSSFAPDYAKAKISAAHIIMIIEKTPLIDSYSTEGLMPNTLEGNVTFGEVVFNYPTRPDIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPLAGKVLLDGKEIKRLNVQWLRAHLGIVSQEPILFDCSIAENIAYGDNSRVVSQEEIVRAAKEANIHAFIESLPNKYSTKVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVFQNGRVKEHGTHQQLLAQKG 1265 HSP 2 Score: 434.106 bits (1115), Expect = 5.480e-127 Identity = 235/588 (39.97%), Postives = 360/588 (61.22%), Query Frame = 1
Query: 148 PPAQISFGQLFSYADSVDYLLMTVATIASIGNGIAQPASFVVFGQLIEKFVKFGASPGAFDISDDMKDFAIIYVIIGACMFVCSFFQAGFWSMTSIRQIHKIRLSFFDSILRQDIGWYDVEE--SGSLTTRLTDDLIKVQAGMGEKIGMALQALAMXXXXXXXXXXYSWELTLVILAVTPALIIVGAIFGKIMGNMSESEQTSYAEAGGIAEEAFSSIRTVVAFCGEQDTIKRYSEKLKDAERAGVKKALLLGGSMGAFHIVIFGCYALAFWHGSQMVADLKINAGELLIVFFCVMIGAAQLGQVGPSFEAISVSRGAAFKVFEIIKRVPTIDCTSDKGTKLESVTGNIQFNDVHFHYPSREEMKILDGFNLTIEEGTTVALVGESGCGKSTCIKLVQRFYDVMQGSVTLDGHDLKTLNVNWLRKNIGVVSQEPVLFDMTITENIKFGAIHQA-TQNEVEEAAKMANAHDFISKLPNKYNTNVGEGGAQLSGGQKQRIAIARALIRNPKILLFDEATSALDTESEAIVQAALDRASKGRTTIIIAHRLSTVRNADKIVAVKEGKVAEQGKHDVLMAAKGVYHQLVLLQ 1902
PP +SF ++ + ++ V +I NG QPA ++F ++I F + P + ++ F+++++ +G F+ F Q + ++R F S+LRQD+ W+D + +G+LTTRL +D +V+ +G ++ + Q +A G I F Y W+LTL++LA+ P + I G + K++ + ++ +G IA EA + RTVV+ EQ Y++ L+ R ++KA + G + +++ YA F G+ +VA ++ ++L+VF V+ GA +GQV + ++ +A + II++ P ID S +G ++ GN+ F +V F+YP+R ++ +L G +L +++G T+ALVG SGCGKST ++L++RFYD + G V LDG ++K LNV WLR ++G+VSQEP+LFD +I ENI +G + +Q E+ AAK AN H FI LPNKY+T VG+ G QLSGGQKQRIAIARAL+R P ILL DEATSALDTESE +VQ ALD+A +GRT I+IAHRLST++NAD IV + G+V E G H L+A KG+Y +V +Q
Sbjct: 693 PP--VSFWRIMKL-NLTEWPYFVVGVFCAIINGGLQPAFAIIFSKIIGVFTRID-DPETKRQNSNL--FSLLFLALGIISFITFFLQGFTFGKAGEILTKRLRYMVFRSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGAIGSRLAVITQNIANLGTGIIISFIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTQEQKFEHMYAQSLQVPYRNSLRKAHIFGITFSFTQAMMYFSYAGCFRFGAYLVAHKLMSFEDVLLVFSAVVFGAMAVGQVSSFAPDYAKAKISAAHIIMIIEKTPLIDSYSTEGLMPNTLEGNVTFGEVVFNYPTRPDIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPLAGKVLLDGKEIKRLNVQWLRAHLGIVSQEPILFDCSIAENIAYGDNSRVVSQEEIVRAAKEANIHAFIESLPNKYSTKVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVFQNGRVKEHGTHQQLLAQKGIYFSMVSVQ 1274 The following BLAST results are available for this feature:
BLAST of TCONS_00061893 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.