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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061892 ID=TCONS_00061892|Name=TCONS_00061892|organism=Clytia hemisphaerica|type=transcript|length=1324bp
GTCTGAGAGTAGCTTTTACATGCGTATTTAGGTAAACATGGCGCTTTTAT
CGATGTTTTACATTGTAATAGCTTTGGGTTTAGTACCTCTGACAGCTGGA
CAACATTGCTCTGAATCGTTTGAGTCTACTCCGACGTGTATTGTCACTGA
TTCGTTACCAAGGACGGAGAAAGGAGAGTTGAACTTCAGATCTATGCCAT
CTGTAGGTAATGGTTATCTTGGAACGGTTGTTATGTCCGATGAAGTTCAT
GTGTCTGGTGTTTTTAACGGACGGGCTAACGTTATTCCGGACACACCAAA
TGATCGGTTGAAAGGAACAAAGCGGCATAGAAGCAAACTTGATTCGGACT
GGTATTATGATCATACGCACCGGGCTCGTGTTCCCTCAACAGTTGCAATA
GAATATCGGCTGAAAGAGACTAACGAGCAGAATCAGTTGTACTTCTTAGA
TACTGAGCGAGGATATTTTGCTCAAACCATCGATACGCCTTCCTACACCC
TACATCAGAAAACATACGCCCACCGCCTCCTTAAAAATATACTGATCACT
GAAATCGAAACAAATGTCAAAACAACGGACACTTTGAATTTCACAGTGTT
ATCGAACATTGGGAACAAGTCACGTGATATTAACTTCCAATCAGTTTCTT
CCAATGAAGAATGGACCTCGTGGTTTGGTTATATNTGGGAACAAGTCACG
TGATATTAACTTCCAATCAGTTTCTTCCAATGAAGAGTGGACCTCGTGGT
TTGGTTATATCAACCAAACAGAAACAGAGACATCCCAAAATGTTTCGGTA
GCTGTTGTCTTTACAAACATACCAACTTTCAAACTCATGGATTACGGGCT
AAGGAGAGATCTTTATATTACAGCAATAGCTACTAGCCTCGATTCACAAG
ACCCAATTAGGGCAGCTCTATCATACTACGAACAAGCGAAACAATTAGGC
GATACAATGGAACTGTTCCCATCACATGTTGAAACTTGGTCTAAATTATG
GGATGAAGGAAACATCACTATTGAGAATGATCTTTACCTCTCACAAACCg
tttttaccagtttttacaACATCCTTTCCTCAGTAAGGGAAGATTGGACA
CTTGGCCTAAGCCCAGGGAGTCTTCCAATGGGATATGAATATCTTGGTCA
TTCATTTTGGGATCAAGATATCTGGATGTTTCCACCTGTAATgatttttc
atccaaaaattgGACGTTCCTTGCTCGAATATCGTTATCAAAGGTTACCT
GCAGCTATGGAGATCGCCAAGAAATATAAATTCAAAGGTAACAAGGTGTT
ATCATAATTTAACGAGTTCTTAAT Run BLAST on NCBI transcript from alignment at scaffold_361:584448..586127+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061892 ID=TCONS_00061892|Name=TCONS_00061892|organism=Clytia hemisphaerica|type=transcript|length=1680bp|location=Sequence derived from alignment at scaffold_361:584448..586127+ (Clytia hemisphaerica)
GTCTGAGAGTAGCTTTTACATGCGTATTTAGGTAAACATGGCGCTTTTAT
CGATGTTTTACATTGTAATAGCTTTGGGTTTAGTACCTCTGACAGCTGGA
CAACATTGCTCTGAATCGTTTGAGTCTACTCCGACGTGTATTGTCACTGA
TTCGTTACCAAGGACGGAGAAAGGAGAGTTGAACTTCAGATCTATGCCAT
CTGTAGGTAATGGTTATCTTGGAACGGTTGTTATGTCCGATGAAGTTCAT
GTGTCTGGTGTTTTTAACGGACGGGCTAACGTTATTCCGGACACACCAAA
TGATCGGTTGAAAGGAACAAAGCGGCATAGAAGCAAACTTGATTCGGACT
GGTATTATGATCATACGCACCGGGCTCGTGTTCCCTCAACAGTTGCAATA
GAATATCGGCTGAAAGAGACTAACGAGCAGAATCAGTTGTACTTCTTAGA
TACTGAGCGAGGATATTTTGCTCAAACCATCGATACGCCTTCCTACACCC
TACATCAGAAAACATACGCCCACCGCCTCCTTAAAAATATACTGATCACT
GAAATCGAAACAAATGTCAAAACAACGGACACTTTGAATTTCACAGTGTT
ATCGAACATTGGGAACAAGTCACGTGATATTAACTTCCAATCAGTTTCTT
CCAATGAAGAATGGACCTCGTGGTTTGGTTATATNTGGGAACAAGTCACG
TGATATTAACTTCCAATCAGTTTCTTCCAATGAAGAGTGGACCTCGTGGT
TTGGTTATATCAACCAAACAGAAACAGAGACATCCCAAAATGTTTCGGTA
GCTGTTGTCTTTACAAACATACCAACTTTCAAACTCATGGATTACGGGCT
AAGGAGAGATCTTTATATTACAGCAATAGCTACTAGCCTCGATTCACAAG
ACCCAATTAGGGCAGCTCTATCATACTACGAACAAGCGAAACAATTAGGC
GATACAATGGAACTGTTCCCATCACATGTTGAAACTTGGTCTAAATTATG
GGATGAAGGAAACATCACTATTGAGAATGATCTTTACCTCTCACAAACCg
tttttaccagtttttacaACATCCTTTCCTCAGTAAGGGAAGATTGGACA
CTTGGCCTAAGCCCAGGTTAGATTTTAACGTGGTAATCGTCAACTTTAAA
TGAAACTATTTCGGCATTGATTAGTTAGAATAAGCCTATAAATTATTTCA
TAATGCAAACTTTGAACAATTAGATCGTTTTACTTAAGTGCGAGCTGACT
ACTGCATTTCTGCTCTGTTGGAGATGGTTTTCATCATGCCAGAACTTCGA
ATACGGTCtaagcttttttttttaagagtctctACAGCGTTGACAAGTTT
CTTGGCAAGTGATCTTTTGATTGACATTCTAGTTCAAAACTAAGGAAATG
GTCAATGATTATCAAGGACACCTGAAACTTTAGGGAATTATTTAACTCGT
TCATCCTTCTTTTTCACCACAGGGAGTCTTCCAATGGGATATGAATATCT
TGGTCATTCATTTTGGGATCAAGATATCTGGATGTTTCCACCTGTAATga
tttttcatccaaaaattgGACGTTCCTTGCTCGAATATCGTTATCAAAGG
TTACCTGCAGCTATGGAGATCGCCAAGAAATATAAATTCAAAGGTAACAA
GGTGTTATCATAATTTAACGAGTTCTTAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061892-exon-scaffold_361-1491911889:584448..585563 | TCONS_00061892-exon-scaffold_361-1491911889:584448..585563 | Clytia hemisphaerica | exon |
| TCONS_00061892-exon-scaffold_361-1510915933:584448..585563 | TCONS_00061892-exon-scaffold_361-1510915933:584448..585563 | Clytia hemisphaerica | exon |
| TCONS_00061892-exon-scaffold_361-1575043694:584448..585563 | TCONS_00061892-exon-scaffold_361-1575043694:584448..585563 | Clytia hemisphaerica | exon |
| TCONS_00061892-exon-scaffold_361-1491911889:585920..586127 | TCONS_00061892-exon-scaffold_361-1491911889:585920..586127 | Clytia hemisphaerica | exon |
| TCONS_00061892-exon-scaffold_361-1510915933:585920..586127 | TCONS_00061892-exon-scaffold_361-1510915933:585920..586127 | Clytia hemisphaerica | exon |
| TCONS_00061892-exon-scaffold_361-1575043694:585920..586127 | TCONS_00061892-exon-scaffold_361-1575043694:585920..586127 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:584448..586127 + |
Blast
BLAST of TCONS_00061892 vs. Swiss-Prot (Human)
Match: PGGHG (Protein-glucosylgalactosylhydroxylysine glucosidase OS=Homo sapiens GN=PGGHG PE=1 SV=2) HSP 1 Score: 100.523 bits (249), Expect = 1.344e-22 Identity = 75/251 (29.88%), Postives = 119/251 (47.41%), Query Frame = 3
Query: 591 SQC---YRTLGTSHVILTSNQFLPMKNGPRGLVIXGN---KSRDINFQSVSSNEEWTSWFGYINQTETETSQNVSVAVVFTNIPTFKLMDYG--LRRDLYITAIATSLDSQDPIRAALSYYEQAKQLGDTMELFPSHVETWSKLWDEGNITIENDLYLSQTVFTSFYNILSSVRED-----WTLGLSPGSLPMGYE---YLGHSFWDQDIWMFPPVMIFHPKIGRSLLEYRYQRLPAAMEIAKKYKFKGNK 1295
SQC +RTL S L +GP L++ +S D++ + +G+ E V +++T P + G R ++TA+ SQ +A L+ +A QL L+ +H + W++LW E + + L L Q + S Y +LS++ + GLSPG L G Y GH FWDQD+WMFP +++FHP+ R++LEYR + L A+E A+ ++G K
Sbjct: 101 SQCIYAHRTLPHVLAFRVSIARLAPGSGPITLLLRSAFSPESPDLDLHQGPDFQGARYLYGHTLTPEQPGGPQQEVHMLWTPAPPDLTLGEGEEARTWDFLTAVG---GSQAEAQACLT---EALQLQARGALYTAHAQAWAQLWVECGLDVVGPLQLRQALRGSLYYLLSALPQPKAPGYICHGLSPGGLSNGSREECYWGHVFWDQDLWMFPSILMFHPEAARAILEYRIRTLDGALENAQNLGYQGAK 345
The following BLAST results are available for this feature:
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