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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061888 ID=TCONS_00061888|Name=TCONS_00061888|organism=Clytia hemisphaerica|type=transcript|length=1111bp
CGATCGCTGGAGGATGTGGCATAAACGagCACAGTTTGATTCACTGGTTC
AATCAATGAGTTTACAACGTAAAATCCCCAATCAAATAAGTGTCACTTGT
ACATATTGTAGTAAGCCCGTCTCCCTTAATATGATGGCTGCAGGAGGGCT
GAGATCAACACGTTTTCTTTACGGCGGTGCAGGCGGTGCTAATCGACAAA
ATAAGgcaatGTCATGCCCTGGATGTCGACAACCTTTACCTCGATGCTCA
GTTTGTTTAATCAATATGGGATCTCTTTCCACACATCAACCTCGAACAGG
CAATCAGAAACCGAAACTGGAGAATAATGTCAATTCGTTTCAAAATTGGT
TTACATGGTGTCAAATGTGCCGCCATGGAGGACATGCCGCTCATCTCGCT
GATTGGTTCGTtGATCACGTGGAATGTCCGGTAACAAGTTGTAATTGCGT
GTGTAACGCCTTGGATCGTGTGTCCATGGTCACTCCACAAGAATTACcag
taaagaaaatttctatgTGATGATGTAAGGACTCGTGTGATGGTgggcaa
gaaaaagtgaggcCACTTCCATGAATTGACGTAAGGACCTACTTGTCGTT
GTTCAAAATGATTATTCATCCTTTGGATTTTTTTTGGTGCGAATCCACTG
AATCCTGGGATCGAATGCAATGACCTTCTTTCATTCGAAGGGAATCTTTA
AAATGAATAGAATTCTTAAATCTCTACTAAACACTTGCGCAGTGCAAGTG
GCTCCAGTGGCTCCATTTCGGTCAGTTTCTTTCAGCTTTATATAGACCCT
GGAGGCAGTTTCTCAAACCCGgacaagcaaaatattttgattggagtttt
tttttaaagtggtacCCGCATCGAAAGCGCTAGATCTAAGTGATATTGCG
CCGTTTGTCGCCATGCAAAGATTTAACACTACAATGGTCCCGAGTTTATG
AAGGTCAGTTTTAGCATATTCTATGCTTTTGtaggaaaaataataatatt
cgCTGCTAGAATAAGATGAACATATTCACACCGATCTGGATTCATATCGA
GGTGAATTTGTAAacagtcaatttttttcaagagtATGGATTATTCATAC
TTTTGCTTAAa Run BLAST on NCBI transcript from alignment at scaffold_361:511156..514335+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061888 ID=TCONS_00061888|Name=TCONS_00061888|organism=Clytia hemisphaerica|type=transcript|length=3180bp|location=Sequence derived from alignment at scaffold_361:511156..514335+ (Clytia hemisphaerica)
CGATCGCTGGAGGATGTGGCATAAACGGTATTCATTTTCTAGATTTTCGA
AACACGCGCTCCCTATAAAAACTAGTATAAGAATCAATTTTCGCTTGGTA
GTTTTTATTTGTCGTGATTTGGCTTGCATTAACGGGTCTGAAGTCAGTAT
TTTCATACTCTGTACCTGAGtgtctcacgtttatcgctttgtagtacact
ctgtgcccATTGTCTGCTTCataattcccgtacggagacctctgcgatga
agtatgatttacaaatagcaacacttctctcatcgtctccactttctcac
caacactccatcgcagcgatcggtttgaaagatttcaaatgagaattttg
aaaattagccgtagatacggGGACTGTGTACAGACAAGTATTTTTATAGT
CATCCTTGAAAATCTGGATCTGGGGTTAGTTTGCTCTTCGGTTTTTGCCA
AATTGATGAACTCTTGTGACGAAGGGTGTTAGGGAAGCGTGGTAATAGAC
TCTCTCAATTTATTGATGAACTCGAACTGTGAtcatttttgggacatttc
cTGGTTGCTAAAAGCATGCATCTGCCCAGTCCAGTCATTATTTTATAAGA
GTTTATTAATCAAAACTTGTATttattctgaattttcttttcagagCACA
GTTTGATTCACTGGTTCAATCAATGAGTTTACAACGTAAAATCCCCAATC
AAATAAGTGTCACTTGTACATATTGTAGTAAGCCCGTCTCCCTTAATATG
ATGGCTGCAGGAGGGCTGAGATCAACACGTTTTCTTTACGGCGGTGCAGG
CGGTGCTAATCGACAAAATAAGGTAGAACTGTTGTTTCTAACTAAACTTT
CACTGTTTCACAAGAGAATGCTAGCACAATACTCTGCTGGAATTACAGAG
AACAACATATCAAATACTTTCATTTTCCACCACAAATTCAGACCCTTATA
ATATTTAACCGTCATAATATATTTACTTGTTGTATATACTTCAAAAAATA
CTGCATCAGTAAGGTTTTGAGAGTTAGCCTATTTGTATGACGCAAACTTT
CAACCATAAATTCAAGACATttaagcgagtttatgtattggaTGATATTG
AGGACGACTgtaagtgaaatgatacaaaacaaagtagATAATTGATGTAA
AGCTATATCgtctttgctcacctaaacagacaaaggtattttgatgtttt
taccgtcgtcgatcAAAAGAGACAGCAATTTTGGAGACAGGACAACTTTG
CTTTTTTATACCGTCTCCTTTGATTTAtcacaaatacataaactcactat
GTGGTCATATGCTGATAATTACCTCTTTTgacaattcatttttttttcag
gcaatGTCATGCCCTGGATGTCGACAACCTTTACCTCGATGCTCAGTTTG
TTTAATCAATATGGGATCTCTTTCCACACATCAACCTCGAACAGGTTcct
atatttcttttatttattttgaactatttctactggaaaacaaaaaattc
caTGACAGTCTGTCATGGCTGATGAAGATTCATTGTAGGAAAATATGGta
gaaatcaagaaaaagccAAATTATTTCAAGAGTAAGAACAAGTGCactaa
aatcaatcaatcatcgATGTGACTCGAAATGCTAAACACTGATTCTAAAC
AATGGTggggatgggaatgtaggggTGGGATCAAATAAGAAAGGGGGTTT
GAAGATTTTCGTCAATTTAATCTTATACAAATGTctgttttcaagtaaaa
atatgACAAGATATGCATCATTTATAATAACTTAATAAAAACGCTAGCTA
GTTATATTGTTAAATTGTTGGCTTGTGACTGTATACATTTTGTACTGTTT
CTTCACTTTGGTGGTGCATTGAGCGAGTTTTATTCGAAGTGAGGATAGGA
TTTCATTACCGAAGGGGATAGGTTCGATTCCAACTTTCCTTTCTTTTTGA
ACAGGCAATCAGAAACCGAAACTGGAGAATAATGTCAATTCGTTTCAAAA
TTGGTTTACATGGTGTCAAATGTGCCGCCATGGAGGACATGCCGCTCATC
TCGCTGATTGGTTCGTGTAAGTGCAATCACTTGAATTCAAAGCGGAGATT
TATTACCGTAAACCCTTTCTCTACATATCATGGTCTACATCATTAAATAT
TCGTTTAGATATTATATGAGCAATATATGTAGTAAGTGTATAGTAGCAAG
TTTTCATCTTTTATTAAAGACTTGTAACTAAAATGCACCGTTACAAAGCA
ATAAATAGCACATTTAACATGTGTACTGTATCTAAATGATAATTCAAACC
TACGATTAATTCGTACACTAAATTCGTAGTTTTACAAATTCTGGCTGTTA
GTAAGTGACGTAGAATCAATgttactttcaaccaatcagctgttgggtcc
gtaaatgacattgcaatggtgcatttCATGAATAGAGAGTTTGATCAAAA
GTAccatctttctttctttaaatttttcagtGATCACGTGGAATGTCCGG
TAACAAGTTGTAATTGCGTGTGTAACGCCTTGGATCGTGTGTCCATGGTC
ACTCCACAAGAATTACcagtaaagaaaatttctatgTGATGATGTAAGGA
CTCGTGTGATGGTgggcaagaaaaagtgaggcCACTTCCATGAATTGACG
TAAGGACCTACTTGTCGTTGTTCAAAATGATTATTCATCCTTTGGATTTT
TTTTGGTGCGAATCCACTGAATCCTGGGATCGAATGCAATGACCTTCTTT
CATTCGAAGGGAATCTTTAAAATGAATAGAATTCTTAAATCTCTACTAAA
CACTTGCGCAGTGCAAGTGGCTCCAGTGGCTCCATTTCGGTCAGTTTCTT
TCAGCTTTATATAGACCCTGGAGGCAGTTTCTCAAACCCGgacaagcaaa
atattttgattggagtttttttttaaagtggtacCCGCATCGAAAGCGCT
AGATCTAAGTGATATTGCGCCGTTTGTCGCCATGCAAAGATTTAACACTA
CAATGGTCCCGAGTTTATGAAGGTCAGTTTTAGCATATTCTATGCTTTTG
taggaaaaataataatattcgCTGCTAGAATAAGATGAACATATTCACAC
CGATCTGGATTCATATCGAGGTGAATTTGTAAacagtcaatttttttcaa
gagtATGGATTATTCATACTTTTGCTTAAa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061888-exon-scaffold_361-1491911889:511156..511182 | TCONS_00061888-exon-scaffold_361-1491911889:511156..511182 | Clytia hemisphaerica | exon |
| TCONS_00061888-exon-scaffold_361-1510915933:511156..511182 | TCONS_00061888-exon-scaffold_361-1510915933:511156..511182 | Clytia hemisphaerica | exon |
| TCONS_00061888-exon-scaffold_361-1575043694:511156..511182 | TCONS_00061888-exon-scaffold_361-1575043694:511156..511182 | Clytia hemisphaerica | exon |
| TCONS_00061888-exon-scaffold_361-1491911889:511800..511977 | TCONS_00061888-exon-scaffold_361-1491911889:511800..511977 | Clytia hemisphaerica | exon |
| TCONS_00061888-exon-scaffold_361-1510915933:511800..511977 | TCONS_00061888-exon-scaffold_361-1510915933:511800..511977 | Clytia hemisphaerica | exon |
| TCONS_00061888-exon-scaffold_361-1575043694:511800..511977 | TCONS_00061888-exon-scaffold_361-1575043694:511800..511977 | Clytia hemisphaerica | exon |
| TCONS_00061888-exon-scaffold_361-1491911889:512506..512599 | TCONS_00061888-exon-scaffold_361-1491911889:512506..512599 | Clytia hemisphaerica | exon |
| TCONS_00061888-exon-scaffold_361-1510915933:512506..512599 | TCONS_00061888-exon-scaffold_361-1510915933:512506..512599 | Clytia hemisphaerica | exon |
| TCONS_00061888-exon-scaffold_361-1575043694:512506..512599 | TCONS_00061888-exon-scaffold_361-1575043694:512506..512599 | Clytia hemisphaerica | exon |
| TCONS_00061888-exon-scaffold_361-1491911889:513110..513221 | TCONS_00061888-exon-scaffold_361-1491911889:513110..513221 | Clytia hemisphaerica | exon |
| TCONS_00061888-exon-scaffold_361-1510915933:513110..513221 | TCONS_00061888-exon-scaffold_361-1510915933:513110..513221 | Clytia hemisphaerica | exon |
| TCONS_00061888-exon-scaffold_361-1575043694:513110..513221 | TCONS_00061888-exon-scaffold_361-1575043694:513110..513221 | Clytia hemisphaerica | exon |
| TCONS_00061888-exon-scaffold_361-1491911889:513636..514335 | TCONS_00061888-exon-scaffold_361-1491911889:513636..514335 | Clytia hemisphaerica | exon |
| TCONS_00061888-exon-scaffold_361-1510915933:513636..514335 | TCONS_00061888-exon-scaffold_361-1510915933:513636..514335 | Clytia hemisphaerica | exon |
| TCONS_00061888-exon-scaffold_361-1575043694:513636..514335 | TCONS_00061888-exon-scaffold_361-1575043694:513636..514335 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:511156..514335 + |
Blast
BLAST of TCONS_00061888 vs. Swiss-Prot (Human)
Match: MIO (GATOR complex protein MIOS OS=Homo sapiens GN=MIOS PE=1 SV=2) HSP 1 Score: 147.517 bits (371), Expect = 2.302e-38 Identity = 71/168 (42.26%), Postives = 94/168 (55.95%), Query Frame = 2
Query: 2 DRWRMWHKRAQFDSLVQSMSLQRKIPNQISVTCTYCSKPVSLNMMAAGGLRSTRFLYGGAGGANRQNKAMSCPGCRQPLPRCSVCLINMGSLSTHQPRTGNQKPKLE----NNVNSFQNWFTWCQMCRHGGHAAHLADWFVDHVECPVTSCNCVCNALDRVSMVTPQE 493
D WR WHKRA+FD + K Q+ V+C +C K +S + A + F G G+ ++K SCPGCR+PLPRC++CLINMG+ + P K++ + F NWFTWC CRHGGHA H+ WF DH ECPV++C C C LD + P E
Sbjct: 705 DAWRFWHKRAEFDIHRSKLDPSSKPLAQVFVSCNFCGKSISYSCSAVPH-QGRGFSQYGVSGSPTKSKVTSCPGCRKPLPRCALCLINMGTPVSSCPGGTKSDEKVDLSKDKKLAQFNNWFTWCHNCRHGGHAGHMLSWFRDHAECPVSACTCKCMQLDTTGNLVPAE 871
The following BLAST results are available for this feature:
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