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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061877 ID=TCONS_00061877|Name=TCONS_00061877|organism=Clytia hemisphaerica|type=transcript|length=1107bp
aggcttcaaaaatacaaaacaaacgtGTAGATAAAACCACAAAATGCTCA
ATAAAGAAGATAAATTTCAGAGCTCTATCAAAACCATTTGAAGTATCCGT
CGCTGTGCAAACCTACCCCATTATATACTACTTAACCCGATAAGCATGCT
ATTCGGCTCTTTGGTTGACTTTTACGTAAAGATTTCCTTTGcgtttttta
gattttatcttTAATAAAAAATGGGAAATTGGATATCAGTTAAAAGAGGT
CAAGAAAATGTTGGAGCAGTCAAGAATTATTGCGAATCTGTTGTTTTTGT
CAGGTTTTATGGACAGACGAATAGTATGAAGGGTCCTCAAGACCATGAAG
AAGTGGACGGCCCTGATCATCACCCCAAAACACAACTCGGACACATTCTC
AATAAACTCGATCAAGAAATTCGAAAAGCATCTGCTGCACATCAACTCGA
AATAACAGATGAATTCAAAGAGCTTTTGCGGGATGTTGCTAAATCCAGGG
TGTGCACAAAAGAAtgcgaaaatgaagaagaatgtCATAACAGGTTATTG
GGAGATGCAGAGAAATTTGTTGAAATATATAAGAAACGTGGATgtGAATC
GGAAGTTCTTCATCAAGACCATTCATTTTATTGGGGAACGCGACAGCAAA
TGTTGTTTGGCAAAGTGATCGTTGATTGGCTACCTGAACACATCGAGACA
AAAACTCCACCTATGGATCCGATCTTTGGAACGCTGTTGAACCCTACTGG
AGGGCGAGTTGGGCCAGGGGACACTGGCTGGATGCACGATACTTTATTCG
ATGATTTGGGACCTTTTGCATATCATTCAGCTGTTCATGATGGTTTCGGa
tatttgaaaacaaaccatAATTCTGGTCCTGGATATTGTTATTTGAACAA
AGGAATTTTTGGTGATTGGAGTCCTTTTGGAGGACAAGCTTTTGGGCTTG
GATTTTGGACAGAGATCTGTGACAGAGAATGCCCTGCCAAAGCTCCAGTA
GAAagctttatttttaaataatatattagttagaaattttaaataaatta
tttcAATATTACCTTAAATTATATCCTACTTTCGGTGTACTTTCTTTTAC
TTGAGGC Run BLAST on NCBI protein sequence of TCONS_00061877-protein >TCONS_00061877-protein ID=TCONS_00061877-protein|Name=TCONS_00061877-protein|organism=Clytia hemisphaerica|type=polypeptide|length=266bp
MGNWISVKRGQENVGAVKNYCESVVFVRFYGQTNSMKGPQDHEEVDGPDH
HPKTQLGHILNKLDQEIRKASAAHQLEITDEFKELLRDVAKSRVCTKECE
NEEECHNRLLGDAEKFVEIYKKRGCESEVLHQDHSFYWGTRQQMLFGKVI
VDWLPEHIETKTPPMDPIFGTLLNPTGGRVGPGDTGWMHDTLFDDLGPFA
YHSAVHDGFGYLKTNHNSGPGYCYLNKGIFGDWSPFGGQAFGLGFWTEIC
DRECPAKAPVESFIFK Run BLAST on NCBI transcript from alignment at scaffold_361:451288..455208+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061877 ID=TCONS_00061877|Name=TCONS_00061877|organism=Clytia hemisphaerica|type=transcript|length=3921bp|location=Sequence derived from alignment at scaffold_361:451288..455208+ (Clytia hemisphaerica)
aggcttcaaaaatacaaaacaaacgtGTAGATAAAACCACAAAATGCTCA
ATAAAGAAGATAAATTTCAGAGCTCTATCAAAACCATTTGAAGTATCCGT
CGCTGTGCAAACCTACCCCATTATATACTACTTAACCCGATAAGCATGCT
ATTCGGCTCTTTGGTTGACTTTTACGTAAAGATTTCCTTTGcgtttttta
gattttatcttTAATAAAAAATGGGAAATTGGATATCAGTTAAAAGAGGT
CAAGAAAATGTTGGAGCAGTCAAGAATTATTGCGAATCTGTTGTTTTTGT
CAGGTTTTATGGACAGACGAATAGTATGAAGGTAAGAAAGCATTCATTGT
GGTTGAATTTGCCATTTTGCCGAAATCAGCCTTGGGTTGATGTATTTCAG
GGTTGCAAAATCCTATTGACTTTTGAACTGTTAGGTATTAATGACAAACC
AGCGTTTATgctgaaaaatactttttttgttaaataCGGGACTGGGCCCA
GGTTTCTTTCCAGATCCATAaccatatttttttttgtttaattagGGTCC
TCAAGACCATGAAGAAGTGGACGGCCCTGATCATCACCCCAAAACACAAC
TCGGACACATTCTCAATAAACTCGATCAAGAAATTCGAAAAGCATCTGCT
GCACATCAACTCGAAATAACAGATGAATTCAAAGAGCTTTTGCGGGATGT
TGCTAAATCCAGGGTGTGCACAAAAGAAtgcgaaaatgaagaagaatgtC
ATAACAGGTTATTGGGAGATGCAGAGAAATTTGTTGAAATATATAAGAAA
CGTGGATGTAAGatttttaaatactaaaatTGTCGAGATGAACCTTGCTT
TGACCTTCCACGTTTTGTACCATGTTGAGACAATGTGCAAACGTTTTTAA
ACTCTTTTGCTGAAAGGAACCCTAAAGGGATCGGGTTCGAATGATGAATG
ACGTCAAATGTTTAAAGTCTTTGAATTGACATACTTATGGAtagttaagg
ccggtctccacttgcgcgcgcttcgatcgcactttttcgagcaaagcttc
cacgctattggtcaaaagaaaaatgaagcaactccattggcgcgatctga
cgtaacggttgaaaaaagttgaaatgtgttcaacttttttttccagcgcg
cgctacatttttatgacgtaatcttttttccaagcaaaaacgattgaagt
caaaaagtgcgatcgcagcgcgcgcaagtggagaccggcctttactaCAA
ACATTTTTGATGTCATTAAACCTGTAAAACTCAAATCGAAATCCCTTGTG
GCAATAAGTCAATGAGATATAACTGAAGGCTAGAGTCGATTCTCTCTTGA
GCGATTTGAAGCCACATTTTCCTTCTTCGCGTGCTTTTCGTACAAACGAA
GGAACGTTCGGAAGTAACATTTCTGCCAGAATtcgtaaaaaatataaagc
gAAAACAAAAGAGTGCTAAATTCCATCAGTCATTGCGATGCACATCTTAA
CGCATCACTTTTTCCTCCTTTTTGAGGCCTCCTCATTCTAGCCTTCGTCG
GGTATACTTCAATGGTCAGGCTTCATAAATATTTTGAgcaaacattttga
aatatttttcaggtGAATCGGAAGTTCTTCATCAAGACCATTCATTTTAT
TGGGGAACGCGACAGCAAATGTTGTTTGGCAAAGTGATCGTTGATTGGCT
ACCTGAACACATCGAGACAAAAACTCCACCTATGGATCCGATCTTTGGAA
CGCTGTTGAACCCTACTGGAGGTAATTTATTCTTCTTTATCGACCCCGCT
TTCTTAGCCGACCCTAATAATGTGTTGTATGCCTAATAAAAACTGGTATA
ACGCAAGTGGAAATATATTTATAATGAGgtatttataaagaaaaagggTC
TTAGTAGACGAAATTTACAAATTAATCAAAAAGTAATTTCAGCTAACCCT
TCGTTAGCTGGCCATAGTTTGAAATCACTTGCATTGAAAATGTCCTGTTT
TGTTtgaaccctattcgtactagggggggagctgtttctgttcgggggtt
aataaaaaaagagcttttggcatgaaattatCTGTAAATTCTTAACTGAG
GCAAACGTTTGATATTAATTGAGATCGACAGTataaactgaaaatttatt
tgaagtGGACTTTAAATTAGCTTTTATTTTGAACTCGATTATATGGCCAG
TTTTTTGCCGTGTCTAATTCAAATATATAAAATCGGCAAAAACGAGGCAA
AAGTTTGATATTAATTGAGATCGAcagtataaaatgaaaatttatttaaa
gtcGACTTTAAATAAGCTTTTATTTTGAACTCGACTTTAAATAAATTGAG
GAAACCcctattttaaacaaaagaaacaaagaagtTTGGTGTCTTTTCAC
ATGAAaacattattgtttgaattAAGATCGACAAAAAAGAAGGCCGTTTA
AACCAGTGCCGATCTTTTGCCGCTCTTTTTAATTAAGTTCAGCAAAATTT
GCCGTGTTCAATTGTTAAGGTCGAcctcaaatcaaaatttgatttatacA
GCCGCTCTTTTGCCGCACTCAATTagactttttttagtttttttgatgAA
GTTATTTGAATTAGACACGGCAAAAAACCGGCCATATAAACTAcgcctaa
aaataaaaaaatttgacacttaaagaatttcacaccttgagcatgattac
atttctgacagtaaggtgtcacaaaaattgacacattaCCAATACAATtt
gttttttatgtcaaatatatcgtttaaaccgtaatttattgaatatttag
taTAGAATAATCATTTGTTAGaaaacaatataacaatagcgttcagtttg
aggtcgttgttgttattttctgcccgcgtagtttgattattcgcccgata
gtgtcatttgggcccgaaTTTGGGCAGAATTTATGACAAAAACGAACGAA
AACTttacgctattactattattatccatttTGGACATTCAAACAgtgtt
tttttctagcgtcagccaagttttttcgcttcaatgcaatgtcttcaaca
agttttgagtGCCCTTGCGAGCGGGCGGCAAATGAACaagaagtgttttt
ttctgacgttagttaagtctcaccgcttcaatgcaacAACTTCAATCCAA
TTCCGAGCGGGCTGCAAATCACGTTACTGCCCATAACcgggcggttaatg
atatttcagccctctgaagcctgACGCGGTAatgaaaatttgagtcactT
TCATTACCGCCCGCCGATtgaatctttaatggcttacttaatgaccgcta
tatggataaaaATAGCTATTTGTAAGAACAAAGGAAACTTTCgatttttg
ctcactttgagcatgatgagtgacgtcatcaaaaaattttcaaatttcat
ccaCAATGAtcctctagatcaaaagttacaggaaCAGCTCCgccctagtt
ttgaaccgccccaAAAGCCTACTATGAATAGCAAATTCAAGAGCTTTCCG
AAATGTTTTCGGAGACCCGCGAAcaagattttaaatttaatgatTCCGGT
GTTCTAATTATTTCAGGGCGAGTTGGGCCAGGGGACACTGGCTGGATGCA
CGATACTTTATTCGATGATTTGGGACCTTTTGCATATCATTCAGCTGTTC
ATGATGGTTTCGGatatttgaaaacaaaccatAATTCTGGTCCTGGATAT
TGTTATTTGAACAAAGGAATTTTTGGTGATTGGAGTCCTTTTGGAGGACA
AGCTTTTGGGCTTGGATTTTGGACAGAGATCTGTGACAGAGAATGCCCTG
CCAAAGCTCCAGTAGAAagctttatttttaaataatatattagttagaaa
ttttaaataaattatttcAATATTACCTTAAATTATATCCTACTTTCGGT
GTACTTTCTTTTACTTGAGGC Coding sequence (CDS) from alignment at scaffold_361:451288..455208+ >TCONS_00061877 ID=TCONS_00061877|Name=TCONS_00061877|organism=Clytia hemisphaerica|type=CDS|length=3204bp|location=Sequence derived from alignment at scaffold_361:451288..455208+ (Clytia hemisphaerica)
ATGGGAAATTGGATATCAGTTAAAAGAGGTCAAGAAAATGTTGGAGCAGT
CAAGAATTATTGCGAATCTGTTGTTTTTGTCAGGTTTTATGGACAGACGA
ATAGTATGAAGGGTCCTCAAGACCATGAAGAAGTGGACGGCCCTGATCAT
CACCCCAAAACACAACTCGGACACATTCTCAATAAACTCGATCAAGAAAT
TCGAAAAGCATCTGCTGCACATCAACTCGAAATAACAGATGAATTCAAAG
AGCTTTTGCGGGATGTTGCTAAATCCAGGGTGTGCACAAAAGAAtgcgaa
aatgaagaagaatgtCATAACAGGTTATTGGGAGATGCAGAGAAATTTGT
TGAAATATATAAGAAACGTGGATgtGAATCGGAAGTTCTTCATCAAGACC
ATTCATTTTATTGGGGAACGCGACAGCAAATGTTGTTTGGCAAAGTGATC
GTTGATTGGCTACCTGAACACATCGAGACAAAAACTCCACCTATGGATCC
GATCTTTGGAACGCTGTTGAACCCTACTGGAGGGCGAGTTGGGCCAGGGG
ACACTGGCTGGATGCACGATACTTTATTCGATGATTTGGGACCTTTTGCA
TATCATTCAGCTGTTCATGATGGTTTCGGatatttgaaaacaaaccatAA
TTCTGGTCCTGGATATTGTTATTTGAACAAAGGAATTTTTGGTGATTGGA
GTCCTTTTGGAGGACAAGCTTTTGGGCTTGGATTTTGGACAGAGATCTGT
GACAGAGAATGCCCTGCCAAAGCTCCAGTAGAAagctttatttttaaata
aATGGGAAATTGGATATCAGTTAAAAGAGGTCAAGAAAATGTTGGAGCAG
TCAAGAATTATTGCGAATCTGTTGTTTTTGTCAGGTTTTATGGACAGACG
AATAGTATGAAGGGTCCTCAAGACCATGAAGAAGTGGACGGCCCTGATCA
TCACCCCAAAACACAACTCGGACACATTCTCAATAAACTCGATCAAGAAA
TTCGAAAAGCATCTGCTGCACATCAACTCGAAATAACAGATGAATTCAAA
GAGCTTTTGCGGGATGTTGCTAAATCCAGGGTGTGCACAAAAGAAtgcga
aaatgaagaagaatgtCATAACAGGTTATTGGGAGATGCAGAGAAATTTG
TTGAAATATATAAGAAACGTGGATgtGAATCGGAAGTTCTTCATCAAGAC
CATTCATTTTATTGGGGAACGCGACAGCAAATGTTGTTTGGCAAAGTGAT
CGTTGATTGGCTACCTGAACACATCGAGACAAAAACTCCACCTATGGATC
CGATCTTTGGAACGCTGTTGAACCCTACTGGAGGGCGAGTTGGGCCAGGG
GACACTGGCTGGATGCACGATACTTTATTCGATGATTTGGGACCTTTTGC
ATATCATTCAGCTGTTCATGATGGTTTCGGatatttgaaaacaaaccatA
ATTCTGGTCCTGGATATTGTTATTTGAACAAAGGAATTTTTGGTGATTGG
AGTCCTTTTGGAGGACAAGCTTTTGGGCTTGGATTTTGGACAGAGATCTG
TGACAGAGAATGCCCTGCCAAAGCTCCAGTAGAAagctttatttttaaat
aaATGGGAAATTGGATATCAGTTAAAAGAGGTCAAGAAAATGTTGGAGCA
GTCAAGAATTATTGCGAATCTGTTGTTTTTGTCAGGTTTTATGGACAGAC
GAATAGTATGAAGGGTCCTCAAGACCATGAAGAAGTGGACGGCCCTGATC
ATCACCCCAAAACACAACTCGGACACATTCTCAATAAACTCGATCAAGAA
ATTCGAAAAGCATCTGCTGCACATCAACTCGAAATAACAGATGAATTCAA
AGAGCTTTTGCGGGATGTTGCTAAATCCAGGGTGTGCACAAAAGAAtgcg
aaaatgaagaagaatgtCATAACAGGTTATTGGGAGATGCAGAGAAATTT
GTTGAAATATATAAGAAACGTGGATgtGAATCGGAAGTTCTTCATCAAGA
CCATTCATTTTATTGGGGAACGCGACAGCAAATGTTGTTTGGCAAAGTGA
TCGTTGATTGGCTACCTGAACACATCGAGACAAAAACTCCACCTATGGAT
CCGATCTTTGGAACGCTGTTGAACCCTACTGGAGGGCGAGTTGGGCCAGG
GGACACTGGCTGGATGCACGATACTTTATTCGATGATTTGGGACCTTTTG
CATATCATTCAGCTGTTCATGATGGTTTCGGatatttgaaaacaaaccat
AATTCTGGTCCTGGATATTGTTATTTGAACAAAGGAATTTTTGGTGATTG
GAGTCCTTTTGGAGGACAAGCTTTTGGGCTTGGATTTTGGACAGAGATCT
GTGACAGAGAATGCCCTGCCAAAGCTCCAGTAGAAagctttatttttaaa
taaATGGGAAATTGGATATCAGTTAAAAGAGGTCAAGAAAATGTTGGAGC
AGTCAAGAATTATTGCGAATCTGTTGTTTTTGTCAGGTTTTATGGACAGA
CGAATAGTATGAAGGGTCCTCAAGACCATGAAGAAGTGGACGGCCCTGAT
CATCACCCCAAAACACAACTCGGACACATTCTCAATAAACTCGATCAAGA
AATTCGAAAAGCATCTGCTGCACATCAACTCGAAATAACAGATGAATTCA
AAGAGCTTTTGCGGGATGTTGCTAAATCCAGGGTGTGCACAAAAGAAtgc
gaaaatgaagaagaatgtCATAACAGGTTATTGGGAGATGCAGAGAAATT
TGTTGAAATATATAAGAAACGTGGATgtGAATCGGAAGTTCTTCATCAAG
ACCATTCATTTTATTGGGGAACGCGACAGCAAATGTTGTTTGGCAAAGTG
ATCGTTGATTGGCTACCTGAACACATCGAGACAAAAACTCCACCTATGGA
TCCGATCTTTGGAACGCTGTTGAACCCTACTGGAGGGCGAGTTGGGCCAG
GGGACACTGGCTGGATGCACGATACTTTATTCGATGATTTGGGACCTTTT
GCATATCATTCAGCTGTTCATGATGGTTTCGGatatttgaaaacaaacca
tAATTCTGGTCCTGGATATTGTTATTTGAACAAAGGAATTTTTGGTGATT
GGAGTCCTTTTGGAGGACAAGCTTTTGGGCTTGGATTTTGGACAGAGATC
TGTGACAGAGAATGCCCTGCCAAAGCTCCAGTAGAAagctttatttttaa
ataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061877-exon-scaffold_361-1491911889:451288..451618 | TCONS_00061877-exon-scaffold_361-1491911889:451288..451618 | Clytia hemisphaerica | exon |
| TCONS_00061877-exon-scaffold_361-1510915933:451288..451618 | TCONS_00061877-exon-scaffold_361-1510915933:451288..451618 | Clytia hemisphaerica | exon |
| TCONS_00061877-exon-scaffold_361-1575043694:451288..451618 | TCONS_00061877-exon-scaffold_361-1575043694:451288..451618 | Clytia hemisphaerica | exon |
| TCONS_00061877-exon-scaffold_361-1491911889:451833..452094 | TCONS_00061877-exon-scaffold_361-1491911889:451833..452094 | Clytia hemisphaerica | exon |
| TCONS_00061877-exon-scaffold_361-1510915933:451833..452094 | TCONS_00061877-exon-scaffold_361-1510915933:451833..452094 | Clytia hemisphaerica | exon |
| TCONS_00061877-exon-scaffold_361-1575043694:451833..452094 | TCONS_00061877-exon-scaffold_361-1575043694:451833..452094 | Clytia hemisphaerica | exon |
| TCONS_00061877-exon-scaffold_361-1491911889:452900..453058 | TCONS_00061877-exon-scaffold_361-1491911889:452900..453058 | Clytia hemisphaerica | exon |
| TCONS_00061877-exon-scaffold_361-1510915933:452900..453058 | TCONS_00061877-exon-scaffold_361-1510915933:452900..453058 | Clytia hemisphaerica | exon |
| TCONS_00061877-exon-scaffold_361-1575043694:452900..453058 | TCONS_00061877-exon-scaffold_361-1575043694:452900..453058 | Clytia hemisphaerica | exon |
| TCONS_00061877-exon-scaffold_361-1491911889:454854..455208 | TCONS_00061877-exon-scaffold_361-1491911889:454854..455208 | Clytia hemisphaerica | exon |
| TCONS_00061877-exon-scaffold_361-1510915933:454854..455208 | TCONS_00061877-exon-scaffold_361-1510915933:454854..455208 | Clytia hemisphaerica | exon |
| TCONS_00061877-exon-scaffold_361-1575043694:454854..455208 | TCONS_00061877-exon-scaffold_361-1575043694:454854..455208 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:451288..455208 + |
Blast
The following BLAST results are available for this feature:
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