TCONS_00061873 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061873
Unique NameTCONS_00061873
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1857

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061873 ID=TCONS_00061873|Name=TCONS_00061873|organism=Clytia hemisphaerica|type=transcript|length=1857bp
GTTTAGTTAaagaataaaataagaaataaaaaatggctgatTTGAGTGCG
CGAAGACAAATTTCAGAAAGTCTGAGGACACAGTCCTGGCAACAAGTTTC
GATTCCCAAGGATGACACCACTATCGATAGAGGACAAGATTTGGTATTGA
AGTATTACTTTGATCGATTACGTCACTCGTATGACATCATTGTATATGAT
ggtaaaacattacgtcatgagtCGGTAGCAAACGAAGAAGACTTCTTAGC
CAAAAATAAACTTTTCAACCCGAATTTGGAAGCAGAATCCACATCGATAC
TCAACGAGTTGTCCTATTGTCTCCAACAATGTCAAAAAGAATTGACTGGG
CTGTCGTTCCAAGTTGAGGAGGACGTCTTAAAGATGAACATCAAAACCAA
ACTAAAATCAGGAATCCCTTTTGCGTGGACATTCACACTGAAAGAAGCCA
CTACTCACATGATTATAGAGCATTTGGTACAACCATTGGCAATCTTGACC
TCCGAACTCAATCGAAGGCAACAAGAATTGTTTTATATGTTGGAAAGGAA
AGATAGAGAGCTTCAAGATTATAAAGACCAAGGGGCGGTTGCCAGTAGAC
GTCATCTGGAAACAGTGCAATTCGATCGAGTCAATTTCCAAACTTCATCG
AACGTACACCAGACTTTTCTGGATTCGTGTACCAACCCAACGTTGAATAG
TTTAACGAaagatttgaaagatcttcacaGAAATGTTGTTCTTAATACTG
CATCAAAGGTTCTACCAGCCGAAGCGGCGCCCCGTGAGCAGCAAAAGGCA
GGGCCTAGTATGTCAACATTCGACACCGTTCCCATTGTTCCTGGTCGTGG
TGAAGACATCTCATCTTGGGTTAACGAGAAGCGTATTGGAGGTTCTTTTG
TTCAAGATCAACTCGATGCTGGCAAAGATCCTCTACAACCTGACCCAGAT
ACTCAGCCTGTTGTCGTCACTGAAGCTCTTTCTCCACAGGTGCTCCTTTC
ATCTTTCCGACGAATTAATTGGTCAATTCTCGTCCTGTAGTCCACCATTG
CTGTTCAAAATGAGGAAATCTATCTTTGATAATGATCAAACTAGGAGGAA
GAGCTGAAACGTCGAGAAGCTTTAAAGAAGAAGTTGAATGAACAAACTGA
GAAGAAAGccaagaagaaaagaaaaatcaaattgtgAGAAACAACAAATT
CTCCAAATGTTGCATGCGAAAACCGTCATCAGGACAGTAAGTTTAGTTCT
CAATCAAGGAGGATTTCATTGAAAAGCTCAGTtcgaattatcaaaaagca
actACAAACGAAGCAAGCGTAAAGCGACCTAACTCGACCACACCAGGATG
ATTATGAAGATTCAAAACACTtagaaagaaattcaaactttcCCTTTTTC
ACTGTTTTAAATTGCACAACACATGTATGTCACACACTATGGTACAAACT
GCGGCTGTAATATCTATTTAAAGTTTCGAActacattttcaaaacaaaga
agaTCACCAttggtttatataccaaatAAACTATTCAGATCCTAGGAATG
CTGCAATATATCGACTTAACGGACTGAACTGTATAATGGAAGAGCCATAA
ACTCTTGTTATTACCATAAAGAAACATTAACATCGAATGAGTTTACTAAT
AAAGTGCCCCTCCAAAAACTATGCGATCTAACACCGATCTAGCATTGATT
TCACATGAAGAATTTCAATAACCTTCCCAGGTATGCTATCCTAATCGTCT
CcatttattttcatatttatgCATATACACTGTTCTTGGATCTTGTACAT
TTTGCGATCTGGATTTTAAAGGATAATATAAAAGTGATTTACTCAGTCTA
ATAGGAA
Run BLAST on NCBI

transcript from alignment at scaffold_361:347380..352295+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061873 ID=TCONS_00061873|Name=TCONS_00061873|organism=Clytia hemisphaerica|type=transcript|length=4916bp|location=Sequence derived from alignment at scaffold_361:347380..352295+ (Clytia hemisphaerica)
GTTTAGTTAaagaataaaataagaaataaaaaatggctgatTTGAGTGCG
CGAAGACAAATTTCAGAAAGTCTGAGGACACAGTCCTGGCAACAAGTTTC
GATTCCCAAGGATGACACCACTATCGATAGAGGACAAGATTTGGTATTGA
AGTATTACTTTGATCGATTACGTCACTCGTATGACATCATTGTATATGAT
ggtaaaacattacgtcatgagtCGGTAGCAAACGAAGAAGACTTCTTAGC
CAAAAATAAAGTAAGTGACAACCTATATTCAAAGGCTGGGTCTTCCTTTA
CACAGTACCCATAGCCCTTGAtcaaaatttgttcttaaagtcTTGAATGA
TGAAAGTTTAAGCCAGAGTAGTCAATGAGTTCCATTGTAATGTAGCTTTT
ATGTGAGGACTAGCCAGCTAGAACAGTGCTTTTGTTCACgatgaaaatga
aagtctttTTAGCGTTCCATAACACCTTGGTATCATTGATTTGACCAAGT
ATTTTTAAAGTATCTTTACGTAAACTATACACATCGTCATCTCAACtttc
ttttctaaaaattctaaaaattagaTTTGTTTTTTGTAGCTTTTCAACCC
GAATTTGGAAGCAGAATCCACATCGATACTCAACGAGTTGTCCTATTGTC
TCCAACAATGTCAAAAAGAATTGACTGGGCTGTCGTTCCAAGTAAATCTT
GTGATTTTCATTCATAGCTTCAATAACAGAATGCAATAAATGATCAAATA
GAGACGATTTTTTACATGGGTAGCCTAGTAATCTAGGACCTTTAgccttt
cgattgttttcacatCTGCCAGCGTTCCTTAGAATCAAAGATTTaatata
cactggataaacaagtaacagatttttgccgatttctcgtgtactagcta
tgtccgcagtaatgatattattgttcactctccttcccccattaaatgtt
ttttcgaagcatttttattgcatttcttatcgaaaaccaCTCATCCAAAT
CCCAAAagacacttaaaactttcctgtgagagtcggattcttccacttaa
ttgataattataagtcgttatgacgtttcaagctgtgagaaagatgcaaa
agacgtgttgtgtataagaaattgaatgttgacaccggaaattttcaaac
ttcaacctaaaaaaaaccaccttgtCACCAGGTGCCTCCataggattttc
ataccacagtggagccaagacactcaagtcttatgtatggtAATTTCAGC
TCTattggggacagtcttggaaagacatttccaattgaaaatttcgtgtc
actataagcattttgtctgaatttcttgtctaattatgattttctcacac
cagatttcacagatgtatccagcttggtatgctagccttactttcaagct
ttttttctgcaaatgtacaaaaagaaagagctagagaactttttgaaaat
aagacagataaacatttttttaaatcagacatcttcgagccgccatgaca
gttgtcctttgcggacaaagcttgaacatcaattgttttctgaaacaatg
aaaatacaatgatcgctctccatcgttttataagtcgtttatccagtgta
taataaatccttgttAGAATTAAGGAGAGATAAAAGTATACCTATAATCG
GATGAGCAAAACCTCCAATTTATTTGACTTAAGCTACAAAGTTGAGATAT
GGCACTTTGAAATCCCACCAAAATTAGTATTGCAGTAGGGGCTGTTCATA
TGGAGGCGGGCTGACTCGGCTAGGTGAGTTGGGATGTACTACGAAAATTT
ATCCAAATTCACCTAGATTTTCGAACATCAAGTGATCTATTTTTAGCCAT
CTTTTTCGTAGAAAACTGTGAAAGTACATGTGGGATGTCACCTAGCCGAG
CCATCCAGCCTCCATATAAACAACTCCTTTCACGGTTACATCAAATGTTT
TTTAGCTAAGAGTAACagtaaaaaatatataacttGCTTGTCTCGAATTT
GGAAGGATATTGAAACAAAAGATTTAGAGTTTTTGCTCGTGGTGCCGGCA
TCAACAGGCTAAAAATGTCAAACGAAGTAATTATAATTTagatatataaa
ataaaaaagataaatatttttcactAGGTTGAGGAGGACGTCTTAAAGAT
GAACATCAAAACCAAACTAAAATCAGGAATCCCTTTTGCGTGGACATTCA
CACTGAAAGAAGCCACTACTCACATGGTAAGAAGATGATAAAAAAGACTT
TACTTACTTGTCATATCTGCAGGCTAAGTTCTACTTTTATTAGGATATTA
GTGTGTCCATCAGAATGAGGAAACATGGTACTCTTTTTTATCTCCATTAC
CATTCGCTTGGATGAGAGATTTCTACCTGCCTGAAAGGCCCATTTTATTT
CCAAATAAATAAGAAAGCATACTTTCTTTCATCCCAGACGTTCGAAATCT
CGCTATTCTTTTTTTTACAGTTTGACCGGAAAATTAATATAAAatccaat
ttcaaaaaaattctgataatttttggcacgttttagaaaaaaacaaaaac
ttcaaattcgCCTTTCCTTATTTCGTATTACCATTTCAGCAAACATAAAT
TTTCGACTTAAAAAGTCGTCGTAAATAAGTCTCTTGTTTCACAGATTATA
GAGCATTTGGTACAACCATTGGCAATCTTGACCTCCGAACTCAATCGAAG
GCAACAAGAATTGTTTTATATGTTGGAAAGGAAAGATAGAGAGCTTCAAG
ATTATAAAGACCAAGGGGCGGTTGCCAGTAGACGTAAGAAAGATTTTTCC
GGTGATTTTTTTAACTGCAGTTTGTTGGTGAACTGATAACATAAattaat
ttttgttgaaaaaagttattttagCAGTTGTTGCAAAAAGGCCACAGGTC
GAAATATTCAAGAGAAATATGATGTGTTTTTTCTGACTCTTTGATTTCAG
CTTTAGTTTAGCTTTAACTTGGTTAGGTTTTCACTCTGTCTTTGAGGTCA
ACCTAATGAATATACACTATTAATTTCCATGAAATCTTTTTAGGTCATCT
GGAAACAGTGCAATTCGATCGAGTCAATTTCCAAACTTCATCGAACGTAC
ACCAGGTACCGTAATATATCATATCCGCAATCTTCATTATAGATTgctta
aagattaaaaaaaaaaacaaaaaaaaacaaggattGAAATATCGATTTTA
TCCCTACaaaatttgtttcttttcaatcaTAGACTTTTCTGGATTCGTGT
ACCAACCCAACGTTGAATAGTTTAACGAaagatttgaaagatcttcacaG
AAATGTTGTTCTTAATACTGCATCAAAGGTTCTACCAGCCGAAGgtaaat
atttgattttttgtaacCTTAATAATGCTTCACTGAACTCTCGAATATAC
GATTCTTCAATGAACCGCTCCTTTGTAAATTGAATTTgtttgaagaaatt
caaagaatttctgtccaactttcttctttcaagaaatttggatggcagag
cagcatatgcatttcgttcTTATTAGGACGtctttattatattatatata
ttgaGTTTGGAAAAATCTTGCCCTTTTATGAGCTGGTGTTATTTTTTTGC
CCTTCTCTACTAtacttttgcatttttcaagAAGAAGTGTGAATGATGCA
GGTCGTCTATTTTTATTAGCGGCGCCCCGTGAGCAGCAAAAGGCAGGGCC
TAGTATGTCAACATTCGACACCGTTCCCATTGTTCCTGGTCGTGGTGAAG
ACATCTCATCTTGGGTTAACGAGAAGCGTATTGGAGGTTCTTTTGTTCAA
GATCAACTCGATGCTGGCAAAGATCCTCTACAACCTGACCCAGATACTCA
GCCTGTTGTCGTCACTGAAGCTCTTTCTCCACAGGTGCTCCTTTCATCTT
TCCGACGAATTAATTGGTCAATTCTCGTCCTGTAGTCCACCATTGCTGTT
CAAAATGAGGAAATCTATCTTTGATAATGATCAAACTAGGTAGATATTTT
CGCCTGTTAGAATCAAACATTTCTTGTGTCAAACTTTCGTTGTCctgtta
tattttattgttttcctTACGCCCGGCTGGGTTATTACTTGCCCATCAAA
AGATTCCTTGCCGCTTTTCTGAAATggttaaatattttctttcacttCCA
CAGGAGGAAGAGCTGAAACGTCGAGAAGCTTTAAAGAAGAAGTTGAATGA
ACAAACTGAGAAGAAAGccaagaagaaaagaaaaatcaaattgtgAGAAA
CAACAAATTCTCCAAATGTTGCATGCGAAAACCGTCATCAGGACAGTAAG
TTTAGTTCTCAATCAAGGAGGATTTCATTGAAAAGCTCAGTtcgaattat
caaaaagcaactACAAACGAAGCAAGCGTAAAGCGACCTAACTCGACCAC
ACCAGGATGATTATGAAGATTCAAAACACTtagaaagaaattcaaacttt
cCCTTTTTCACTGTTTTAAATTGCACAACACATGTATGTCACACACTATG
GTACAAACTGCGGCTGTAATATCTATTTAAAGTTTCGAActacattttca
aaacaaagaagaTCACCAttggtttatataccaaatAAACTATTCAGATC
CTAGGAATGCTGCAATATATCGACTTAACGGACTGAACTGTATAATGGAA
GAGCCATAAACTCTTGTTATTACCATAAAGAAACATTAACATCGAATGAG
TTTACTAATAAAGTGCCCCTCCAAAAACTATGCGATCTAACACCGATCTA
GCATTGATTTCACATGAAGAATTTCAATAACCTTCCCAGGTATGCTATCC
TAATCGTCTCcatttattttcatatttatgCATATACACTGTTCTTGGAT
CTTGTACATTTTGCGATCTGGATTTTAAAGGATAATATAAAAGTGATTTA
CTCAGTCTAATAGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038807XLOC_038807Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061873-exon-scaffold_361-1491911889:347380..347639TCONS_00061873-exon-scaffold_361-1491911889:347380..347639Clytia hemisphaericaexon
TCONS_00061873-exon-scaffold_361-1510915933:347380..347639TCONS_00061873-exon-scaffold_361-1510915933:347380..347639Clytia hemisphaericaexon
TCONS_00061873-exon-scaffold_361-1575043694:347380..347639TCONS_00061873-exon-scaffold_361-1575043694:347380..347639Clytia hemisphaericaexon
TCONS_00061873-exon-scaffold_361-1491911889:347969..348070TCONS_00061873-exon-scaffold_361-1491911889:347969..348070Clytia hemisphaericaexon
TCONS_00061873-exon-scaffold_361-1510915933:347969..348070TCONS_00061873-exon-scaffold_361-1510915933:347969..348070Clytia hemisphaericaexon
TCONS_00061873-exon-scaffold_361-1575043694:347969..348070TCONS_00061873-exon-scaffold_361-1575043694:347969..348070Clytia hemisphaericaexon
TCONS_00061873-exon-scaffold_361-1491911889:349507..349605TCONS_00061873-exon-scaffold_361-1491911889:349507..349605Clytia hemisphaericaexon
TCONS_00061873-exon-scaffold_361-1510915933:349507..349605TCONS_00061873-exon-scaffold_361-1510915933:349507..349605Clytia hemisphaericaexon
TCONS_00061873-exon-scaffold_361-1575043694:349507..349605TCONS_00061873-exon-scaffold_361-1575043694:349507..349605Clytia hemisphaericaexon
TCONS_00061873-exon-scaffold_361-1491911889:350024..350162TCONS_00061873-exon-scaffold_361-1491911889:350024..350162Clytia hemisphaericaexon
TCONS_00061873-exon-scaffold_361-1510915933:350024..350162TCONS_00061873-exon-scaffold_361-1510915933:350024..350162Clytia hemisphaericaexon
TCONS_00061873-exon-scaffold_361-1575043694:350024..350162TCONS_00061873-exon-scaffold_361-1575043694:350024..350162Clytia hemisphaericaexon
TCONS_00061873-exon-scaffold_361-1491911889:350423..350484TCONS_00061873-exon-scaffold_361-1491911889:350423..350484Clytia hemisphaericaexon
TCONS_00061873-exon-scaffold_361-1510915933:350423..350484TCONS_00061873-exon-scaffold_361-1510915933:350423..350484Clytia hemisphaericaexon
TCONS_00061873-exon-scaffold_361-1575043694:350423..350484TCONS_00061873-exon-scaffold_361-1575043694:350423..350484Clytia hemisphaericaexon
TCONS_00061873-exon-scaffold_361-1491911889:350612..350723TCONS_00061873-exon-scaffold_361-1491911889:350612..350723Clytia hemisphaericaexon
TCONS_00061873-exon-scaffold_361-1510915933:350612..350723TCONS_00061873-exon-scaffold_361-1510915933:350612..350723Clytia hemisphaericaexon
TCONS_00061873-exon-scaffold_361-1575043694:350612..350723TCONS_00061873-exon-scaffold_361-1575043694:350612..350723Clytia hemisphaericaexon
TCONS_00061873-exon-scaffold_361-1491911889:351049..351368TCONS_00061873-exon-scaffold_361-1491911889:351049..351368Clytia hemisphaericaexon
TCONS_00061873-exon-scaffold_361-1510915933:351049..351368TCONS_00061873-exon-scaffold_361-1510915933:351049..351368Clytia hemisphaericaexon
TCONS_00061873-exon-scaffold_361-1575043694:351049..351368TCONS_00061873-exon-scaffold_361-1575043694:351049..351368Clytia hemisphaericaexon
TCONS_00061873-exon-scaffold_361-1491911889:351533..352295TCONS_00061873-exon-scaffold_361-1491911889:351533..352295Clytia hemisphaericaexon
TCONS_00061873-exon-scaffold_361-1510915933:351533..352295TCONS_00061873-exon-scaffold_361-1510915933:351533..352295Clytia hemisphaericaexon
TCONS_00061873-exon-scaffold_361-1575043694:351533..352295TCONS_00061873-exon-scaffold_361-1575043694:351533..352295Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:347380..352295 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.81393	0.281584	0.868805	1.22005	1.25683	0.758046	0	1.6475	1.03205	0.700108	0	0	0	0	0	0	0	0	0.38741	0	1.17976	1.64654	0	0.494452	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061873 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top