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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061870 ID=TCONS_00061870|Name=TCONS_00061870|organism=Clytia hemisphaerica|type=transcript|length=852bp
CTGAAAGTTAATCTAGGAAAGCCATTTAATTTaaatgagAATATTGGAAT
TTAATCATCTATTTATCAATCTTGAAATAAAATGATAAGCAACAGAAGTG
AGAAGACAGGAATGAAAAGGCCTGTAAAAACATCTTCATCTGAGCCTGCC
AATAAAATTATGAAGAAGTCAACAATTGATTCACCAGGAGCAGTAAAGCC
TGGTCACTGGACACAAGGTTTAAAACAAGCTCTGCAAAATCCTAAAAACA
TCATCctagaaactgaaaaatgctctgTAATTCATGATAAATATCCAAAa
gcgaaaaaacattttttggtgATTGCAAAAGGTGATGTATCAAGTATGAA
ATCTCTGAATAGAAGCCATGTCCCACTGATAAATGAAATGATTAAAATCG
GTCGACAGTTGGAATCAACAGAATCAGACACTAATCCGTCAATCAGATTT
CGAATGGGATTTCATGCAGTACCAAGCATGACACTCTTACATATGCATGT
CATCAGTACAGACTTTGATTCAccatctttgaaaaataaacgtCATTGGA
ACTCTTTCACCACTGATTTCTTTAGACCAGCAAATTCAATTTTGAGTGAA
TTATCAGAGAAAGGTTGCATAACTATTGATACCTTGTATTACAAACAACT
TTTAGAATCTAGTTTAAAGTGTCATATTTGCAATGCTGATTTGAGGAACA
TTCCAAGATTAAAAGAACATGTGAGAACTCATTTCTCCTAAGTTGAACGT
TTTCTTTGTAAATTGTGTTTCTATATTTATAGTCAATgcattatttttta
taagatagtatttatttttattgatacAAAAAATTAGCCTGTCAGATTCC
TG Run BLAST on NCBI protein sequence of TCONS_00061870-protein >TCONS_00061870-protein ID=TCONS_00061870-protein|Name=TCONS_00061870-protein|organism=Clytia hemisphaerica|type=polypeptide|length=219bp
MISNRSEKTGMKRPVKTSSSEPANKIMKKSTIDSPGAVKPGHWTQGLKQA
LQNPKNIILETEKCSVIHDKYPKAKKHFLVIAKGDVSSMKSLNRSHVPLI
NEMIKIGRQLESTESDTNPSIRFRMGFHAVPSMTLLHMHVISTDFDSPSL
KNKRHWNSFTTDFFRPANSILSELSEKGCITIDTLYYKQLLESSLKCHIC
NADLRNIPRLKEHVRTHFS Run BLAST on NCBI transcript from alignment at scaffold_361:319177..327183+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061870 ID=TCONS_00061870|Name=TCONS_00061870|organism=Clytia hemisphaerica|type=transcript|length=8007bp|location=Sequence derived from alignment at scaffold_361:319177..327183+ (Clytia hemisphaerica)
CTGAAAGTTAATCTAGGAAAGCCATTTAATTTGTAAGTTTAGTAACTTTC
ACTTTGTACAACACCCACCCTGTCACGTAGCCCCCGCCTGCCCCTCCACC
GGACCCACCGGCAGTTTGCGTGTTTGAAAATTTAGGCCAGGGGGGTTCCT
CCTGATGCATAGCACCAGACACCAGAGCGGAGAGAGTTGAGTGGGgttag
aatagaccttttttaaagaggcagccatgttgaataattatgtactccag
cataaaaacaatgatgatACAGCCatgaataatttttaaaatatccaTGA
TACggtagctgggagacccgacttctctgtctatgtggtttcaaaaagat
atcaaagtatagacagtagcagccgggaattatacaagatgtcaagaatt
aatcgcagaatttgattggctgatatcttattgttatgatttgataaaca
aaagtatgacgtcaaacagctctattgtttcaagaagtggcgcaagcttt
tgaattgttttgaaaaaataacgtttttttcttttgtgatttggagtgat
ttgaatcgagtcaataattccatactctgtatttcagtgaagttgttggg
attttaacaggatagaaatatttttgtaacagagtaccgtgagtggtcct
aaatccgacagccctgcctaaatccgaccccccaaataactgctatgaaa
aaaaattctatgtttacaaacattccctctccaagttgagcaataaacta
tattgcaacaattctcgaaacaaaacatctaacaagaagactaaaatgtc
aagatgtcaattaatgtgataaaagTTGTACAACaagagttgtaaaaata
attacctttattattctgaatccgttgttcgtgttttttaaaacgttaac
aatttagtaataaaaaaaattatgttttgtataagaagcaattaatgttt
tggttcaattggttcagtgcatcagatctctcagtttagttgacactttg
gtatcttcattgcgtcacagcgaaagacttgtttttattttagtttgtat
ctttgaaagaccccatcggatttaggcagggctgtcggatttaggaccac
tcacggtatggTCTCCAGACTAGATAcagcatggctgtatcattgttttt
atgctgggagtagataattattcaacatggctgcctctttaaaaaaaggt
ctatttggaTGTCCTTTTTACATCTTGTCCTTGTCTGCCACAGTGTCAAA
AAGTAGTCTCCGCACGACCCCCTGCctgtgcacccgacagtcggggttgg
cagacgatatcatactccaggatgcaagtaacatttttcaatctgcggac
ctagatgggggttcggttattatcagttatggttagggttggagctcgag
agtcacaatataaggccgaaggtcttcttaggggcattcgtaccctgtga
cttaacttaggatcccccgtagggatccttgtaggtgcaccggtagggtt
gggagctttcttaattagggtctgtaaattacacgctataagtatttgtg
aatgacagcgTTCTGTCGTGTCTCGTTGGCGGAAGCGGTTAAGCATTGGG
TTAATAAACCAAGGTTGTTtgtatttggtggttcgagcctgTTTGGAGAc
ctgtttcaccggtacgggcaaatttcagaaaaatacttagaacagttaga
aacacttgagaaagacagaaaatctggatagaagataggaaagtagaaaa
tagggggaaaatgagagacgatgcatcctggagtatgatatcgtttgcca
accacaTTATCTAAGGGTCTTATCTGTTTCATCTTCCTTTTAAGAGCTCT
GAACCTAGAGTTCAANGAAATAGGGGGAACataagagacgatgcatcctg
gagtatgatatcgtttgccaactgACACTCGGGTGCTGTCAGGCTGTCGG
GTATTTTGTCGGgtgctgaaatttctaaatttgcgaaaacaCCTGAAAAA
TAGTGCACCTGACAGTCGGGTGCTTTAAAATTCCTAACTTAGTGAGAACA
CCCGACACCGCCTGATGGGCCTTTGGCTTTACGCCCTATACTATTTCCCA
CTTATCTGGTATATACTctatgtagaaattttcttccgacacgctaaagc
tcggaaggtcgggaaaattttaacatctggaacctttgggttatatacca
tttttctttttttctgtaaggtttctcaggcagcagagattttcatgccA
AATTTACTCAGGTGCAACcgatagtcaagcaaaaagtgtaaggacagcta
gacacgactgtgatgcggtacatcaaaggatgactactataggtctccga
tggtatattggcctgCTCCTTTGGAGCTTTAGCGTGGttggccgccaata
cgccatcggaatatcagataaatttCCCACCATTTttcacaagtgttacg
cgtaagccaaatcgcgtaacacgaacaacctctaaattgccgagtacagg
agaaaaaaaattgaaattcaaatggcggccaagcccacgctgataactat
caaaaatcttttgtgtttcaaaataaaacgatttccaaaccaacctaaag
tcggtgtctgccaactaaaaatttctctgcggggtcactggcaaggattt
acaacttcagactttagattccaattcttgtataggctgcaactacactg
ccaaatgatctgtatcaaaaagacttccaaatgggtTCATAAGTtataaa
aatgagattatcattagcacaggggttttgtttttaaaaataaacttcaa
aataaaattgttaatgaacttgttacttaaaatatcacttacttacataa
tttatttatgatataacacccctttcttaaataaatggtcTNNNNNNNNN
NNNNNcctttcttaaataaatggtctcttaaagtcttttatgtttgccgc
aagaagggagaaaaatttaatttgacccccggttttttctctctttttct
agcctTTTCctgcgtgttagtgtagacacttaactttaatccggggaaat
gaagcgttttcattggtctaaaatcacggatggtcatgtgaccagaattt
ttatccagggaaatgctgtggccgcaatgttttgatttagtgagattgac
cattttgttgtttagatttgagcgggcaaaatttctgtacaaaccaaaat
atggctttgttggaataccggttgaaacacttgtgctTTTCCGATGCCGT
GGGCGTCAGTCATATGATATGAACCTCATCNCTTGTGCTTTTCCGATGCC
GTGGGCGTCAGTCATATGATATGAACCTCATCGGCCCTTATAAGGCACTA
TTTCTCTTCACTGGCGGAAAAGGGCCGGCGTGTAAATTGGATCAACGATG
ggtttaatagaccttttcaactttccaaaaatatccttattcggctgacg
gtaaattattctcctgggaatagaaccgtcagacgatcaaatcaaaacat
tgatctgaaccctctgaatgtgtgacgtcataatgactgctttcagtttg
cgtgttttgaaagtttgatgtgtgtactccgtcttggtggaattttttat
CCCGTCCTCATCTcggttgagatccctctaaattgGAATTGATAATTCCA
CATAGGAAAGggctagagacttgaaattttcacagaatgtactTATATTT
Ncggaatcaagataattccacataggaaagtgctagagacttgaaatttt
cacagaatgtacttatatttgtcctctaaaggataaaagaaaaaggagaa
aGAAGAACACTATTGTGGAGCAATACCGTCTTTAGCCGCAAATCACGCGC
ACTAGCCTCAATAAATATTAGGTGTACTGGACATGGTTCATGTACTAtta
atgaggccccccagcggacccaaaattcacgccatcacgccaattttttt
cgatttcacgccatcacccctgaaaaatttgattttaacgatcacgccaa
tttttttcgatttcacgccatatTATGcttagaaaatttaattttcacgT
TCATATTCATATACCACGTTTAGACTCATTGTTATGGATGAAATGCCGtt
atataaacttaatttttgcccacAAATAGGTGTGTGTTTTGTGGTCAATC
AGTGTTTTGGCATTGTCATacgcgtaagtcaagattatattatttttcct
atcggaaacacctgaaaaatttagaaggaatttgacctctgtttttctat
ttttagcaaCACAGtcacaggggtcaaattccagttttttcgGGTCTTTC
GGATAGAAAAGATGACGTAATtttgacttatgcatatcaaaaatagTTTG
ACAACTGATGGGTCACATTGAAGGGCCCAgtttgagggctgaggtatatt
tgagttaattgacaaagcccaccatggttgggcaacggagaaaatttttg
aattttgaagggttaaaagtgctattttaggacccattcaatttgaaaaa
taattcatgtaaaaataatggaaatctttcAAAAGTATAAGTAGCTTTTT
TTGGTAAAACATGAAGGCCATTTTCCCCATGGTCCATGgacattaattgt
gaattagtgTGAATAGTTTTGAAAAGGGGAACgaagagaaattttcaatt
cagCATGGCTAAAATTGTCCTCATCtactctcttttttccaaaatatgat
tTAAACATCACAGGACTGCACAGGATTCCAATGCCAATCTGCtcaaaatt
acacctcataaaTAAATCTGTTGCTTCTTTTTGTTTAAGGCTTTGCtatg
aatatatattttcctgaaataaaggacNtctgttgcttctttctgtttaa
ggctttgctatgaatatatattttcctgaaataaaggacctgatgtcttt
gatgcatctaagaataagcatctaagaataagcatttaagaaagagagga
aaatgttagttacggaggatgcgcaaccatggtttgcgctgacgggagaa
attttcaattttcgtccCTCTTGTAGCAttcaactttattttgaagacta
gccAGCAAGTGCTAAAGACAATtggaagttacaaggataaatggcagatg
aataaaactgtttgcaccgtttctttaatgtttcaaaatgaGATCTATAA
GAGATCtatagttggggccgaccaagaaaattttgaaattttaaccctct
aaattggctaaaatggacattGAATTTCTCTCGCGGCCTtcaggggaaaa
ggaaagtgatcaatattcttcgaaggaagaacttgccaaaaaaaacccta
gacaaaaagatgtcttttgaggttgggaatggatcctgtgaagatgaaaa
aattttgacaaggtgtttttttggcaaacccaaaaactctaatttttttc
ttccctcaagctaaaaCGGTTACAGGTTTTGGGCAATCAAGGCAAAAATC
AGATCCTCACtgaacagtcccatgtttcaacaACCAATTGTCCTAAGTTA
GAGTGGTTGAcggtaattttgaatgaaaaggtGAAAACTTTGACACCACA
TTGCATGAAAACTTTTGAATGGAAATTACATACAGGTATTTACTTCTCAG
ATCAGAAAGTGTATGTGAAATTGACTCTACTTTACTATTTTATGTTTAAT
TATTGGCCGACATTCCATACTGCATTATAGATACTTAAACTTTGAGATAT
CATATATTACATacatttcttcttttcatctGCTTTTTTCTTTACTATCA
AGGCAGTTCGTGGTAGTTCAATTTTtgaactgatttttgaaaacatgaac
cttaatttcttattattttttgattatgtAATCCTTTTGAAGCAAGAAAG
TGTGACCATGCTGATTCACAAACCAATGAAATGACATCCAAGGCAAAGAC
AATCCTTTTAACAGGATAGACCTACCATGACACACATCCTGTTTTTATGG
AGCAACCAAATGAGAAAACCATGGTCAAACTATGCCGTTTTCTGGATCGT
TGTGGCTCATTGTGTCATTTTCCATCTCGTTGTGTAATTTTTCGGCTCGT
TGTGTCATTTTTCGGCTCGTTTTGTCATTTTTCGGCTCGTGGCTCTTTGT
GGCTCTTCTTTTTCTGGCTCGTGCCATTTTCTGGCATGTGGGTCATTGTG
GCTCGTTGTGCCATTTTCTGGCTCGTTGTGGGTCGTTGTAGCTTGTTTTG
CCGTTCTCTGGCTCATTGTGGCTCGTTGTGGCTTATGATGCTATTTTCTG
ACTTGTTGTGCAATTTTGTGGCTCGTTGTGGCTCGTTCAGGCTCGTTGTG
TTTTAGTATTACCCTAAAGCAAGGAATCAAAAAATCTAAACTGTAGCCTT
TCAATTTATTTCCAAAAAGATATTTTCACTAGTATCATTTTAAATGATAA
GTCATCTCCTAAAGAATCTTACAAAATTATGATATCAATCATTTGGAGTG
TATTACAAATACTTGTTTTTCACTCTGATTCTGAGGTTCTGAAATTCAAG
GGAGGTCGCAATgaccaggcggtgtcaatcgaGCAAGTTTGAACGAAAAT
CGCGATTGAACAAATCAAATGTAATcaaacgcgatcgaataattgctaTT
TGATTATCGAaagcaatcgaatcgcaatcaaacagctgattcctgggtaa
tattcgattgtgtttgattggtattaaattcaatttagatttgattacgt
ttgatcagtttgattgcgataatgttttttttataagattaatTGCAATT
AAATTATCTCGCTCTCTTAGAGCTTTAGTGTGGGCAGCAGCCAATACGCC
ATTGGAAAATCAGATATAATGGATGAGTGCATAAGTACAGCACGAGACGA
GAGTAATCGAAGTGAGTGAatgcaattgaatcaatcgaacataatcaaAT
ACGAACataatcgaacagcaaatcttAGGTTATATTCGATTACGATTTGA
TTGCGTTTGACAGttgaatcgcaattattcgattgcgttcgattgtgttc
aattgatttgGTGTCCGatttgtttgattgacaccgtctggcaaTGAAGG
CTTAGCTTATCAGTTAACAGTTATCTTTAATATAAAACGTTCAAACAGAT
AAAGATgatatattcaaattttgatttctttagaAATGAGAATACTGAAA
AAAGAtgatatattcaatttttgatttttttttatagaaatgagAATATT
GGAATTTAATCATCTATTTATCAATCTTGAAATAAAATGATAAGCAACAG
AAGTGAGAAGACAGGAATGAAAAGGCCTGTAAAAACATCTTCATCTGAGC
CTGCCAATAAAATTATGAAGAAGTCAACAATTGATTCACCAGGAGCAGTA
AAGCCTGGTCACTGGACACAAGGTTTAAAACAAGCTCTGCAAAATCCTAA
AAACATCATCctagaaactgaaaaatgctctgTAATTCATGATAAATATC
CAAAagcgaaaaaacattttttggtgATTGCAAAAGGTGATGTATCAAGT
ATGAAATCTCTGAATAGAAGCCATGTCCCACTGATAAATGAAATGATTAA
AATCGGTCGACAGTTGGAATCAACAGAATCAGACACTAATCCGTCAATCA
GATTTCGAATGGGATTTCATGCAGTACCAAGCATGACACTCTTACATATG
CATGTCATCAGTACAGACTTTGATTCAccatctttgaaaaataaacgtCA
TTGGAACTCTTTCACCACTGATTTCTTTAGACCAGCAAATTCAATTTTGA
GTGAATTATCAGAGAAAGGTTGCATAACTATTGATACCTTGTATTACAAA
CAACTTTTAGAATCTAGTTTAAAGTGTCATATTTGCAATGCTGATTTGAG
GAACATTCCAAGATTAAAAGAACATGTGAGAACTCATTTCTCCTAAGTTG
AACGTTTTCTTTGTAAATTGTGTTTCTATATTTATAGTCAATgcattatt
ttttataagatagtatttatttttattgatacAAAAAATTAGCCTGTCAG
ATTCCTG Coding sequence (CDS) from alignment at scaffold_361:319177..327183+ >TCONS_00061870 ID=TCONS_00061870|Name=TCONS_00061870|organism=Clytia hemisphaerica|type=CDS|length=660bp|location=Sequence derived from alignment at scaffold_361:319177..327183+ (Clytia hemisphaerica)
ATGATAAGCAACAGAAGTGAGAAGACAGGAATGAAAAGGCCTGTAAAAAC
ATCTTCATCTGAGCCTGCCAATAAAATTATGAAGAAGTCAACAATTGATT
CACCAGGAGCAGTAAAGCCTGGTCACTGGACACAAGGTTTAAAACAAGCT
CTGCAAAATCCTAAAAACATCATCctagaaactgaaaaatgctctgTAAT
TCATGATAAATATCCAAAagcgaaaaaacattttttggtgATTGCAAAAG
GTGATGTATCAAGTATGAAATCTCTGAATAGAAGCCATGTCCCACTGATA
AATGAAATGATTAAAATCGGTCGACAGTTGGAATCAACAGAATCAGACAC
TAATCCGTCAATCAGATTTCGAATGGGATTTCATGCAGTACCAAGCATGA
CACTCTTACATATGCATGTCATCAGTACAGACTTTGATTCAccatctttg
aaaaataaacgtCATTGGAACTCTTTCACCACTGATTTCTTTAGACCAGC
AAATTCAATTTTGAGTGAATTATCAGAGAAAGGTTGCATAACTATTGATA
CCTTGTATTACAAACAACTTTTAGAATCTAGTTTAAAGTGTCATATTTGC
AATGCTGATTTGAGGAACATTCCAAGATTAAAAGAACATGTGAGAACTCA
TTTCTCCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061870-exon-scaffold_361-1491911889:319177..319208 | TCONS_00061870-exon-scaffold_361-1491911889:319177..319208 | Clytia hemisphaerica | exon |
| TCONS_00061870-exon-scaffold_361-1510915933:319177..319208 | TCONS_00061870-exon-scaffold_361-1510915933:319177..319208 | Clytia hemisphaerica | exon |
| TCONS_00061870-exon-scaffold_361-1575043694:319177..319208 | TCONS_00061870-exon-scaffold_361-1575043694:319177..319208 | Clytia hemisphaerica | exon |
| TCONS_00061870-exon-scaffold_361-1491911889:326364..327183 | TCONS_00061870-exon-scaffold_361-1491911889:326364..327183 | Clytia hemisphaerica | exon |
| TCONS_00061870-exon-scaffold_361-1510915933:326364..327183 | TCONS_00061870-exon-scaffold_361-1510915933:326364..327183 | Clytia hemisphaerica | exon |
| TCONS_00061870-exon-scaffold_361-1575043694:326364..327183 | TCONS_00061870-exon-scaffold_361-1575043694:326364..327183 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_361 | supercontig | scaffold_361:319177..327183 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003824 |
catalytic activity |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00061870 vs. Swiss-Prot (Human)
Match: APTX (Aprataxin OS=Homo sapiens GN=APTX PE=1 SV=2) HSP 1 Score: 171.014 bits (432), Expect = 8.906e-50 Identity = 79/180 (43.89%), Postives = 126/180 (70.00%), Query Frame = 1
Query: 202 GHWTQGLKQALQNPKNIILETEKCSVIHDKYPKAKKHFLVIAKGDVSSMKSLNRSHVPLINEMIKIGRQLESTESDTNPSIRFRMGFHAVPSMTLLHMHVISTDFDSPSLKNKRHWNSFTTDFFRPANSILSELSEKGCITI-DTLYYKQLLESSLKCHICNADLRNIPRLKEHVRTHFS 738
GHW+QGLK ++Q+PK + + E+ VI DKYPKA+ H+LV+ +SS+K++ R H+ L+ M +G ++ + + +RFR+G+HA+PSM+ +H+HVIS DFDSP LKNK+HWNSF T++F + +++ + E G +T+ D + +LL+ L+CH C L +IP+LKEH+R H++
Sbjct: 179 GHWSQGLKISMQDPKMQVYKDEQVVVIKDKYPKARYHWLVLPWTSISSLKAVAREHLELLKHMHTVGEKV-IVDFAGSSKLRFRLGYHAIPSMSHVHLHVISQDFDSPCLKNKKHWNSFNTEYFLESQAVIEMVQEAGRVTVRDGM--PELLKLPLRCHECQQLLPSIPQLKEHLRKHWT 355
The following BLAST results are available for this feature:
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