TCONS_00061856 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061856
Unique NameTCONS_00061856
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061856 ID=TCONS_00061856|Name=TCONS_00061856|organism=Clytia hemisphaerica|type=transcript|length=1406bp
CTTTTCCATAAGACGTGTCAAAATTATGAATATAAAAGCACATAAGATGA
ATGCAAAAAGCATAACTGTCCTGTCGTAGTCAAAAGGACAAGGATATTTT
CGAATATTCAAAGGACTCACGATGCAGATCTTTATCTTTTCGTTGATTGC
TTCGATCGCATACACTCAAGgTTATCACATCAAAGGTCCACAAAAAGACC
ATAAGGAGATAAGTTACGATGAACCAATGCCCGAAGAAGATGCACAATAT
GATGAAGAAATGTACCATGATGGTCCAAGTTACGATGGACCGGTGCCCGA
AGGAGCTCCACAATATGATGAAGAAATGTACCAAGATGGTTTGAGCTGCA
AGGATAAATATTCAAATTGTCCAACTTCTTTGCGTCAATATTGCGAAAGT
CACAGTTTTGTGAAGACGGATTGGTGTCGGAAAACATGTGGTGATTGCTC
ACCAGACCCAGCTCCTGCTTATGTGACAGCTGAACCGAAAATTTCAAGCT
CAGAGATGGAAAGCATCAAAGCAACTTGCTTGGCAGCTCACAATGCAAAA
CGAGCACTCCACAGAGACACATCCTCAATGACTTATGACATGGACCTCGC
GAAACGTGCTCAAACCTACGCAGAATATCTCCTGGAATTCAAGCAGTGGA
AACACGACGACTTTCGAACATATAATGGCTACGAAACTGGAGTTGGTGAA
AACCTTTATTGGTCGTCTTCAGCAAGTGGAGCCTCTACTAACGCTGTTAC
TTCTTGGTACGACGAAATCAAGAACTACAATTATGAAACCGGCAAGTCAA
ACGGTGGAGATATTGGTCATTTCACACAATTAGTTTGGGATTCTTCAACT
AAATTGGGTTGCGGTGTTGCTAAAGGAACAGGTGGAACTTACGTCGTTTC
CAGATATTTACCCGCCGGCAACACACAAGACCAGTACACACAGCATGTTC
ATGAGTTAATCGCGAAAAAAGATCAACAAGACGATGCTGTAGAAGAAAAA
GTTTTATAAGCCAGGATTTCCAACACAAATATTCAAGATGCTGAAAATTT
GGTTACATCGTAGAATTAATAGTATTTCCCATGAAATAACgtaaaaatta
taataaacCCTTTGTTATTTTGCACACATATATCTTCAATTTGCTTAAAA
TATCGTCacttatttattttattggCTGCTTTACAGATGTAAAATTTAAA
CCTTCCTTTATTTGAAACATGCACTTTCAAGGAAATGACATCCGACATGA
CCTTTCGTATTTGTACATCTTAaattaacaagtgatacttttatggacct
acctggttatgcatttaacacatatataattgatatctacgtgacgtgac
cattaaacaatcattcagaacacAAATAGTGACGATTTATTAAGATTAGT
CCtttg
Run BLAST on NCBI

transcript from alignment at scaffold_361:94600..97930+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061856 ID=TCONS_00061856|Name=TCONS_00061856|organism=Clytia hemisphaerica|type=transcript|length=3331bp|location=Sequence derived from alignment at scaffold_361:94600..97930+ (Clytia hemisphaerica)
CTTTTCCATAAGACGTGTCAAAATTATGAATATAAAAGCACATAAGATGA
ATGCAAAAAGCATAACTGTCCTGTCGTAGTCAAAAGGACAAGGATATTTT
CGAATATTCAAAGGACTCACGATGCAGATCTTTATCTTTTCGTTGATTGC
TTCGATCGCATACACTCAAGGTGAGATCTAAATTGACTTTCCAAACCATC
TAAATTGAACCGTTGGACCTTTTCAGTGaaatatatttcttgaaaatgaa
acTGTTAATGTTAGATGAATTAAGAAACGTTGCGAGCTTTGTAATACATC
GTcactttaatatttttcaaggTTATCACATCAAAGGTCCACAAAAAGAC
CATAAGGAGATAAGTGAGTGATTATGATTTTTGTCTTTTCCCTTATGAAG
CATTATATTATGAAGCCCATTATCCTATTCAATAATCCCcctttttttgc
taaaaatttgaaaaaacccgGAAGCAAACTGACTTTTGAACAAGAATGCC
CTTTGAGGGAGTGCTTCAGAGTCCGGTATTCCGGTATTCCGGTTATGAGT
AGAAAAATTACCGGTATTCCAGTATTTAAGATGCCTGCCGGTACCGGTAT
TTACAGAGATATATACTGGTATTTCAGTGAAGGATTAGAAAATGACCGGT
ATTCTGGTATTTTGTACCCTCGGAAGCCCCCCACCTTTGACTTTCACAAT
TGCACCTTTCTGGCAGAAACATAAGACGGGGATAATGGCAATATAACCCT
TGTCTCGTACTTCAGCTCGAGGAAGTCAAaggcaaaaaataaataaataa
caaaacatttttgttcAATCAAGGTTACGATGAACCAATGCCCGAAGAAG
ATGCACAATATGATGAAGAAATGTACCATGATGGTCCAAGTGAgtctttt
caaatatttttgtattttgtattttttgtattCAACATATAGAGTATCGC
TCGGTAGATTAGGACGGACCAATGTCATATACAACTCTTGTCTTGTACTT
CAACACGAAGAAggtcaaaaaataaataagaaaaactttattgttCAAGG
TTACGATGGACCGGTGCCCGAAGGAGCTCCACAATATGATGAAGAAATGT
ACCAAGATGGTTTGAGTGAGTAGTTTTGATATTTCCTTTGACGACAAGGA
AGTGATTGAAAGTGAGGCTAAGTCTTGCTTTCCATGGGTTTCAAAATGTT
ATCACCAGTCCAAACGCTGAGTCTAAAATGTCTGGAATTATTTTGGGATT
GGAgattgatttcttttgtttacaaaGAGTTGAAATTATAATCGTAATTT
CTTCTTTAGGCTGCAAGGATAAATATTCAAATTGTCCAACTTCTTTGCGT
CAATATTGCGAAAGTCACAGTTTTGTGAAGACGGATTGGTGTCGGAAAAC
ATGTGGTGATTGCTCACCAGACCCAGCTCCTGGTAAGATATAATCGAAAT
CAATATATTAGTAGTAGAACCtctttttagactttttataaatttaaaaa
aataaaatttaaccaTCATGCTTTGCTGCAAGGTAGTTGTTTTGAGAACA
TTCATTATCGTTAAGACTCAATGTAGACCAGTTAGACTTAGCTCAAAAAA
TGGGATAAATATTCAATACTTTTTATACTATTACTTTTCACAGCTTATGT
GACAGCTGAACCGAAAATTTCAAGCTCAGAGATGGAAAGCATCAAAGGTA
TGACTTTCAGTGAATTCCTGAACGctggtaaaaaaattaatctcGTTGGA
GTGGCTATAAATGAACAAAATATTATAGTAAAGAAGTTACAAgacaaaag
aagaaagaaaccAAATATCACTAATTGTGaatgttcaattgttttacaag
tttgttttggacacgtgattttaattgttctctttataTAATGACACGTG
TTTCGCGCAATGTTTAAATTTTACTACTGTTATCTCCCTTTAAATGNAAT
GACACGTGGTACGCGCAATGTTTAAATTTTactactgttatgtcccttta
aattttTGTTAAGCTACAGttattcttattttcttgtttatCATAAAAGC
AACTTGCTTGGCAGCTCACAATGCAAAACGAGCACTCCACAGAGACACAT
CCTCAATGACTTATGACATGGACCTCGCGAAACGTGCTCAAACCTACGCA
GAATATCTCCTGGAATTCAAGCAGTGGAAACACGACGACTTTCGAACATA
TAATGGCTACGAAACTGGAGTTGGTGAAAACCTTTATTGGTCGTCTTCAG
CAAGTGGAGCCTCTACTAACGCTGTTACTTCTTGGTAAGATTACTAAGAT
TAATAAAACTCAATAATTCGAGAAGGATTCTCatctatataataataata
gtaGATATACGTATTTGAACACTTTCTCTGCGTGTTTTGATGTTTGCTAG
CGATTTCAGATTTCCGTAATTCTTTTTCCCGGGGATATAATTTGCATCAA
CATTTTTTAGCATAAACCCAGATGATACATATTGGTGATTTTTGTTTCCT
GAATATTGTCTATgacttttaaagattttaacaaTAGGCTGCGGAAAACC
TACGAATTCCTCTACATTGAATATTGAGTGATCCGTAATCTTTCTAAATT
TGTGGTATTTTAAAGGATTTAGCCCCTTGAAACACAATGCTAAAAACAGT
TGCCATGAAAACATTCTTTGATTTGATCTAGGTACGACGAAATCAAGAAC
TACAATTATGAAACCGGCAAGTCAAACGGTGGAGATATTGGTCATTTCAC
ACAATTAGTTTGGGATTCTTCAACTAAATTGGGTTGCGGTGTTGCTAAAG
GAACAGGTGGAACTTACGTCGTTTCCAGATATTTACCCGCCGGCAACACA
CAAGACCAGTACACACAGCATGTTCATGAGTTAATCGCGAAAAAAGATCA
ACAAGACGATGCTGTAGAAGAAAAAGTTTTATAAGCCAGGATTTCCAACA
CAAATATTCAAGATGCTGAAAATTTGGTTACATCGTAGAATTAATAGTAT
TTCCCATGAAATAACgtaaaaattataataaacCCTTTGTTATTTTGCAC
ACATATATCTTCAATTTGCTTAAAATATCGTCacttatttattttattgg
CTGCTTTACAGATGTAAAATTTAAACCTTCCTTTATTTGAAACATGCACT
TTCAAGGAAATGACATCCGACATGACCTTTCGTATTTGTACATCTTAaat
taacaagtgatacttttatggacctacctggttatgcatttaacacatat
ataattgatatctacgtgacgtgaccattaaacaatcattcagaacacAA
ATAGTGACGATTTATTAAGATTAGTCCtttg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038800XLOC_038800Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061856-exon-scaffold_361-1491911889:94600..94769TCONS_00061856-exon-scaffold_361-1491911889:94600..94769Clytia hemisphaericaexon
TCONS_00061856-exon-scaffold_361-1510915933:94600..94769TCONS_00061856-exon-scaffold_361-1510915933:94600..94769Clytia hemisphaericaexon
TCONS_00061856-exon-scaffold_361-1575043694:94600..94769TCONS_00061856-exon-scaffold_361-1575043694:94600..94769Clytia hemisphaericaexon
TCONS_00061856-exon-scaffold_361-1491911889:94921..94962TCONS_00061856-exon-scaffold_361-1491911889:94921..94962Clytia hemisphaericaexon
TCONS_00061856-exon-scaffold_361-1510915933:94921..94962TCONS_00061856-exon-scaffold_361-1510915933:94921..94962Clytia hemisphaericaexon
TCONS_00061856-exon-scaffold_361-1575043694:94921..94962TCONS_00061856-exon-scaffold_361-1575043694:94921..94962Clytia hemisphaericaexon
TCONS_00061856-exon-scaffold_361-1491911889:95423..95488TCONS_00061856-exon-scaffold_361-1491911889:95423..95488Clytia hemisphaericaexon
TCONS_00061856-exon-scaffold_361-1510915933:95423..95488TCONS_00061856-exon-scaffold_361-1510915933:95423..95488Clytia hemisphaericaexon
TCONS_00061856-exon-scaffold_361-1575043694:95423..95488TCONS_00061856-exon-scaffold_361-1575043694:95423..95488Clytia hemisphaericaexon
TCONS_00061856-exon-scaffold_361-1491911889:95649..95714TCONS_00061856-exon-scaffold_361-1491911889:95649..95714Clytia hemisphaericaexon
TCONS_00061856-exon-scaffold_361-1510915933:95649..95714TCONS_00061856-exon-scaffold_361-1510915933:95649..95714Clytia hemisphaericaexon
TCONS_00061856-exon-scaffold_361-1575043694:95649..95714TCONS_00061856-exon-scaffold_361-1575043694:95649..95714Clytia hemisphaericaexon
TCONS_00061856-exon-scaffold_361-1491911889:95909..96031TCONS_00061856-exon-scaffold_361-1491911889:95909..96031Clytia hemisphaericaexon
TCONS_00061856-exon-scaffold_361-1510915933:95909..96031TCONS_00061856-exon-scaffold_361-1510915933:95909..96031Clytia hemisphaericaexon
TCONS_00061856-exon-scaffold_361-1575043694:95909..96031TCONS_00061856-exon-scaffold_361-1575043694:95909..96031Clytia hemisphaericaexon
TCONS_00061856-exon-scaffold_361-1491911889:96243..96296TCONS_00061856-exon-scaffold_361-1491911889:96243..96296Clytia hemisphaericaexon
TCONS_00061856-exon-scaffold_361-1510915933:96243..96296TCONS_00061856-exon-scaffold_361-1510915933:96243..96296Clytia hemisphaericaexon
TCONS_00061856-exon-scaffold_361-1575043694:96243..96296TCONS_00061856-exon-scaffold_361-1575043694:96243..96296Clytia hemisphaericaexon
TCONS_00061856-exon-scaffold_361-1491911889:96649..96883TCONS_00061856-exon-scaffold_361-1491911889:96649..96883Clytia hemisphaericaexon
TCONS_00061856-exon-scaffold_361-1510915933:96649..96883TCONS_00061856-exon-scaffold_361-1510915933:96649..96883Clytia hemisphaericaexon
TCONS_00061856-exon-scaffold_361-1575043694:96649..96883TCONS_00061856-exon-scaffold_361-1575043694:96649..96883Clytia hemisphaericaexon
TCONS_00061856-exon-scaffold_361-1491911889:97281..97930TCONS_00061856-exon-scaffold_361-1491911889:97281..97930Clytia hemisphaericaexon
TCONS_00061856-exon-scaffold_361-1510915933:97281..97930TCONS_00061856-exon-scaffold_361-1510915933:97281..97930Clytia hemisphaericaexon
TCONS_00061856-exon-scaffold_361-1575043694:97281..97930TCONS_00061856-exon-scaffold_361-1575043694:97281..97930Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:94600..97930 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.20931	1.36953	0.480244	0.903961	32.2673	31.5805	21.5274	39.0169	5.90733	4.23683	0	0	0	0	16.0239	31.7837	2.16209	3.03684	0	0	4.05759	6.35696	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061856 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top