TCONS_00061853 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061853
Unique NameTCONS_00061853
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1161

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061853 ID=TCONS_00061853|Name=TCONS_00061853|organism=Clytia hemisphaerica|type=transcript|length=1161bp
GGCGAACGATGGAATTCGAATTTGCTTTCCCGTGGGTGGTTGGTGTTGTG
CCTAAGGGATACAAAGAGTTTGCAATGTTACCGGAAAACTGCCAAACCCA
TTCACCATTAACATGGTTTACTAGATATAAAATTCTAGGAATCAAGTCAG
CAGGTGATTTCTCTAATTCAAATCGATCAATTGTGGATGGTCAGAACGAG
GCTGGCCTGTCTGCAGGAGCTTTATGGTTTGAAGGGTTTACAGAGTACCC
TGATGCAGTACCTGAGCAACACTGTAGTCACTCCATACCACACATGCAAT
TGATCAATTATTTGCTAGGTAATTTTTCCAGCGTTGAGCAGGTCCGTATA
GCTTTCAAGTACGATATCTTTCCATTTGTTTGGGGTCAATACGTCACGTA
ATGGCATGGAGACATCAAGATAGATAAATACCAGTTTCCTCTGCATTTGA
GATTGGCTGACCGAAGTGGAGATTCTATTGTGATTGAATACACGAAAGGA
AAAGGTCGACAAGTATTTGATAATAAAATTGGAATCTTAACCAATAGTCC
TCCCTATGATTGGCATGTTTTGAATTTAGTCAACTCGATCAATGTTCAGA
ACCAAGGTTATCCAGCTAAACATGTGACAAAACAAGAACGGAATTACACC
ATTGAAGCGTTCTGGGATGGAACAGGAATGTTGGAATTACCAAGCTTAGC
TGCCCAAGTGCTACAAAATACTACTCCCTAAAAATAATGTAAAGGAGAGG
TCCAGCAACCACGAAAATGTTTTCATCGTCATTGCATCCAATACTCTACC
AAGGAATTTCGAACCTATTACCAGCTTTACTCGGCTGCACTTCCCTCATC
ATCTTagcaaaaaacactttttgttttatttcctTGTTAACTGAATTTAA
TTTAGGATGGTGTATTGAGATCACAAACGCGGAAATACGGACGCATTTCT
CTCTTGTTGCTTGGATAACGGTGTAAATATTTCCCTTTAATTCGTTTGAT
CTATTTGATTGCTGAAACATAATCTTGTTGAAACATAAACATgcaaaaat
tctaattttctgATGTAACAGTTTTCTGATGATATATTTGCTAAGAAATT
CAAGCTTTTCAGCGGAATATCAAAATAGAGACTTTCCATCAGTGAACGAT
GATTTATGTCT
Run BLAST on NCBI

protein sequence of TCONS_00061853-protein

>TCONS_00061853-protein ID=TCONS_00061853-protein|Name=TCONS_00061853-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
RTMEFEFAFPWVVGVVPKGYKEFAMLPENCQTHSPLTWFTRYKILGIKSA
GDFSNSNRSIVDGQNEAGLSAGALWFEGFTEYPDAVPEQHCSHSIPHMQL
INYLLGNFSSVEQVRIAFKYDIFPFVWGQYVT
Run BLAST on NCBI

transcript from alignment at scaffold_361:81226..82797+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061853 ID=TCONS_00061853|Name=TCONS_00061853|organism=Clytia hemisphaerica|type=transcript|length=1572bp|location=Sequence derived from alignment at scaffold_361:81226..82797+ (Clytia hemisphaerica)
GGCGAACGATGGAATTCGAATTTGCTTTCCCGTGGGTGGTTGGTGTTGTG
CCTAAGGGATACAAAGAGTTTGCAATGTTACCGGAAAACTGCCAAACCCA
TTCACCATTAACATGGTTTACTAGATATAAAATTCTAGGAATCAAGTCAG
CAGGTGATTTCTCTAATTCAAATCGATCAATTGTGGATGGTCAGAACGAG
GCTGGCCTGTCTGCAGGAGCTTTATGGTTTGAAGGGTTTACAGAGTACCC
TGATGCAGTACCTGAGCAACACTGTAGTCACTCCATACCACACATGCAAT
TGATCAATTATTTGCTAGGTAATGTATATTCTTATTTCTACGTTTATAAG
TTCTACAATCTTGGCTTACTTAACAAGGACCCTTTTAtcattcagaaaaa
aacaccgTGATTTTCCAAATAAGATTTCCCTCATACAATACATAATTTGA
TGTTATTAAGGTATTTTTTCACCACGCACTAAATCATTTTAGAGGAAAAA
caatttcaagaatattttatgtcacaaacttgtgaaaaaaaactCTTAGT
ACACTTTATGAAAAACAAGATAATATCATAGttagatatttcatttttag
atcTATGTGAGTCAGGTCTCAAACTAAAAGAAACTTTcactctttgaaaa
aaaaataatttgcttCACAAAAAAGCATCGTTAGCGTGAATGTAAATGTT
GAACAAATCTTCACACTTTATAATTTCAGGTAATTTTTCCAGCGTTGAGC
AGGTCCGTATAGCTTTCAAGTACGATATCTTTCCATTTGTTTGGGGTCAA
TACGTCACGTAATGGCATGGAGACATCAAGATAGATAAATACCAGTTTCC
TCTGCATTTGAGATTGGCTGACCGAAGTGGAGATTCTATTGTGATTGAAT
ACACGAAAGGAAAAGGTCGACAAGTATTTGATAATAAAATTGGAATCTTA
ACCAATAGTCCTCCCTATGATTGGCATGTTTTGAATTTAGTCAACTCGAT
CAATGTTCAGAACCAAGGTTATCCAGCTAAACATGTGACAAAACAAGAAC
GGAATTACACCATTGAAGCGTTCTGGGATGGAACAGGAATGTTGGAATTA
CCAAGCTTAGCTGCCCAAGTGCTACAAAATACTACTCCCTAAAAATAATG
TAAAGGAGAGGTCCAGCAACCACGAAAATGTTTTCATCGTCATTGCATCC
AATACTCTACCAAGGAATTTCGAACCTATTACCAGCTTTACTCGGCTGCA
CTTCCCTCATCATCTTagcaaaaaacactttttgttttatttcctTGTTA
ACTGAATTTAATTTAGGATGGTGTATTGAGATCACAAACGCGGAAATACG
GACGCATTTCTCTCTTGTTGCTTGGATAACGGTGTAAATATTTCCCTTTA
ATTCGTTTGATCTATTTGATTGCTGAAACATAATCTTGTTGAAACATAAA
CATgcaaaaattctaattttctgATGTAACAGTTTTCTGATGATATATTT
GCTAAGAAATTCAAGCTTTTCAGCGGAATATCAAAATAGAGACTTTCCAT
CAGTGAACGATGATTTATGTCT

Coding sequence (CDS) from alignment at scaffold_361:81226..82797+

>TCONS_00061853 ID=TCONS_00061853|Name=TCONS_00061853|organism=Clytia hemisphaerica|type=CDS|length=798bp|location=Sequence derived from alignment at scaffold_361:81226..82797+ (Clytia hemisphaerica)
CGAACGATGGAATTCGAATTTGCTTTCCCGTGGGTGGTTGGTGTTGTGCC
TAAGGGATACAAAGAGTTTGCAATGTTACCGGAAAACTGCCAAACCCATT
CACCATTAACATGGTTTACTAGATATAAAATTCTAGGAATCAAGTCAGCA
GGTGATTTCTCTAATTCAAATCGATCAATTGTGGATGGTCAGAACGAGGC
TGGCCTGTCTGCAGGAGCTTTATGGTTTGAAGGGTTTACAGAGTACCCTG
ATGCAGTACCTGAGCAACACTGTAGTCACTCCATACCACACATGCAATTG
ATCAATTATTTGCTAGGTAATTTTTCCAGCGTTGAGCAGGTCCGTATAGC
TTTCAAGTACGATATCTTTCCATTTGTTTGGGGTCAATACGTCACGTAAC
GAACGATGGAATTCGAATTTGCTTTCCCGTGGGTGGTTGGTGTTGTGCCT
AAGGGATACAAAGAGTTTGCAATGTTACCGGAAAACTGCCAAACCCATTC
ACCATTAACATGGTTTACTAGATATAAAATTCTAGGAATCAAGTCAGCAG
GTGATTTCTCTAATTCAAATCGATCAATTGTGGATGGTCAGAACGAGGCT
GGCCTGTCTGCAGGAGCTTTATGGTTTGAAGGGTTTACAGAGTACCCTGA
TGCAGTACCTGAGCAACACTGTAGTCACTCCATACCACACATGCAATTGA
TCAATTATTTGCTAGGTAATTTTTCCAGCGTTGAGCAGGTCCGTATAGCT
TTCAAGTACGATATCTTTCCATTTGTTTGGGGTCAATACGTCACGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038798XLOC_038798Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061853-proteinTCONS_00061853-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061853-exon-scaffold_361-1491911889:81226..81543TCONS_00061853-exon-scaffold_361-1491911889:81226..81543Clytia hemisphaericaexon
TCONS_00061853-exon-scaffold_361-1510915933:81226..81543TCONS_00061853-exon-scaffold_361-1510915933:81226..81543Clytia hemisphaericaexon
TCONS_00061853-exon-scaffold_361-1575043694:81226..81543TCONS_00061853-exon-scaffold_361-1575043694:81226..81543Clytia hemisphaericaexon
TCONS_00061853-exon-scaffold_361-1491911889:81955..82797TCONS_00061853-exon-scaffold_361-1491911889:81955..82797Clytia hemisphaericaexon
TCONS_00061853-exon-scaffold_361-1510915933:81955..82797TCONS_00061853-exon-scaffold_361-1510915933:81955..82797Clytia hemisphaericaexon
TCONS_00061853-exon-scaffold_361-1575043694:81955..82797TCONS_00061853-exon-scaffold_361-1575043694:81955..82797Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:81226..82797 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.831377	0.650015	0.745417	0.412549	0	0	0.0940459	0.0880446	0.376846	0.229061	0.741107	0.292305	0.632447	1.11151	0.124611	1.16956	0.494221	0.450276	2.58697	1.3919	2.94435	2.21138	2.58196	1.68843	2.12052	2.0327	0.300909	0.107046	1.86739	1.28053
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029132CBAH/NAAA_C
IPR029055Ntn_hydrolases_N
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061853 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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