TCONS_00061852 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061852
Unique NameTCONS_00061852
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length404

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061852 ID=TCONS_00061852|Name=TCONS_00061852|organism=Clytia hemisphaerica|type=transcript|length=404bp
GTCTTGattgaTTGATTGTTTCCATTGTTTGTTTCATCGtttccaatgac
gtcatcggttccAAATTATTTCCACaTTCCCAACATGACAGCACGCATGA
GAAGTTACACCCGTCATTTTTGACGCCGTTTCTACGATTACGTTATTTAT
TCATTCCGTCTCTACAGTTCTGTTTGCGTTCAAACATTACTACCTtcatt
ttggcttgtttttagaTGTATTTTTACCACTTCACTAACTTGACTATTAT
TACGTCAACCGTCACTAGTTTTGGTGGTGTTTATTCTTACGCCCTAGCGT
TTTCACCTTATGGGTTACCTTGGATGAATATGAAAAAGAGTGCAGTGCTA
AAACTCATGTCGCTATTGATTTCGATTGGATCATTTTCCTTGTAAATATC
CGAC
Run BLAST on NCBI

transcript from alignment at scaffold_361:38141..39947+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061852 ID=TCONS_00061852|Name=TCONS_00061852|organism=Clytia hemisphaerica|type=transcript|length=1807bp|location=Sequence derived from alignment at scaffold_361:38141..39947+ (Clytia hemisphaerica)
GTCTTGGTAAgtaaaatatcaactttttcatgatttttaaggattgaaat
attttcgatatcaactttttcatgatttttaagGATTGAATTATTTTCgg
agtttaaaaatttttattctatTATTGCGAGAagtgttgaaacttttttt
ttattttttaaatagaaGTGAAAAGTCTTTAAATTGTTCAATCGAATAAA
TTTTATCTTTTCGGAGTTCGAATGAATGACACGGATGAATTTTCGTTGCA
TTGGAGCAGACATATTTTGGAGATGGTTGAAATTTGCAAATAGATGGTTG
TTTGTGGAATGTTTCTCAAGTTGtcatgaatttattttttggtgAAGAAA
GAAATTGTCGTTTTTTGAGTTTATCGATCATTGTTCATGTGcttcaaatg
tttttcattcgattatttatttttcagattgaTTGATTGTTTCCATTGTT
TGTTTCATCGtttccaatgacgtcatcggttccAAATTATTTCCACGTAA
GTATATTTAATCATGTACTTGGTTTCCGGCTGATGTGAAATTGCCTGCAG
CTTAAATGTTTCTGCATACCGGAATTGTTTGAACAAATGAACCTATTCTA
AAACTTAGAAATGAGGGCTTggttagcctgtaccaaactcttcttggTGG
TATAATATGTACAGTTCGGGCTTTTATGTGACTGAGAAGAATCCACTCAA
GTCTCGGTTGTATAGAgttaaaagatttttagaatttaaGCTTCTTtaat
taggcgagaccaattaatttgttgttctgcgggcccgaccgaccctattt
ttgctaaaatcaaaaaaatgataatattgaatttccactacaatatattt
tacacactagttatttgtaagaattaaccttgaataaaactgaaaattta
ttcaagaaattgaaaaatcataaaaagcattccatacactaaaattttat
tatgatcttcatcgaagtaaaaaacaaagtgaatttttgatccagatact
ttttggaaaattttctcggtaccttaccgaccttaccaaccctgataaat
gaaaaatttattcttattttgccgACCGACCCATACTTCTCCAACGATCT
GtccgtagaacaataaattaaattgcTCTCGCCTTAGTCGAATAAATGCA
ATTGTTTTTGTACTCGGTGTGTTTTAAACTTTTCCACCACATCAGCATTC
TCATTAGCCgcttctttaaaaaaaccaTTTATTCACCTTCGAGTTAACAA
GTTTCGTTGTGCAATTAACctccaaaattttcattttttttattcttaga
TTCCCAACATGACAGCACGCATGAGAAGTTACACCCGTCATTTTTGACGC
CGTTTCTACGATTACGTTATTTATTCATTCCGTCTCTACAGTTCTGTTTG
CGTTCAAACATTACTACCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTCAAACATTACTACCTtc
attttggcttgtttttagaTGTATTTTTACCACTTCACTAACTTGACTAT
TATTACGTCAACCGTCACTAGTTTTGGTGGTGTTTATTCTTACGCCCTAG
CGTTTTCACCTTATGGGTTACCTTGGATGAATATGAAAAAGAGTGCAGTG
CTAAAACTCATGTCGCTATTGATTTCGATTGGATCATTTTCCTTGTAAAT
ATCCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038797XLOC_038797Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061852-exon-scaffold_361-1491911889:38141..38146TCONS_00061852-exon-scaffold_361-1491911889:38141..38146Clytia hemisphaericaexon
TCONS_00061852-exon-scaffold_361-1510915933:38141..38146TCONS_00061852-exon-scaffold_361-1510915933:38141..38146Clytia hemisphaericaexon
TCONS_00061852-exon-scaffold_361-1575043694:38141..38146TCONS_00061852-exon-scaffold_361-1575043694:38141..38146Clytia hemisphaericaexon
TCONS_00061852-exon-scaffold_361-1491911889:38568..38636TCONS_00061852-exon-scaffold_361-1491911889:38568..38636Clytia hemisphaericaexon
TCONS_00061852-exon-scaffold_361-1510915933:38568..38636TCONS_00061852-exon-scaffold_361-1510915933:38568..38636Clytia hemisphaericaexon
TCONS_00061852-exon-scaffold_361-1575043694:38568..38636TCONS_00061852-exon-scaffold_361-1575043694:38568..38636Clytia hemisphaericaexon
TCONS_00061852-exon-scaffold_361-1491911889:39440..39549TCONS_00061852-exon-scaffold_361-1491911889:39440..39549Clytia hemisphaericaexon
TCONS_00061852-exon-scaffold_361-1510915933:39440..39549TCONS_00061852-exon-scaffold_361-1510915933:39440..39549Clytia hemisphaericaexon
TCONS_00061852-exon-scaffold_361-1575043694:39440..39549TCONS_00061852-exon-scaffold_361-1575043694:39440..39549Clytia hemisphaericaexon
TCONS_00061852-exon-scaffold_361-1491911889:39729..39947TCONS_00061852-exon-scaffold_361-1491911889:39729..39947Clytia hemisphaericaexon
TCONS_00061852-exon-scaffold_361-1510915933:39729..39947TCONS_00061852-exon-scaffold_361-1510915933:39729..39947Clytia hemisphaericaexon
TCONS_00061852-exon-scaffold_361-1575043694:39729..39947TCONS_00061852-exon-scaffold_361-1575043694:39729..39947Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_361supercontigscaffold_361:38141..39947 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.623117	0.382139	0.0739379	0.0255477	2.38145	1.85393	3.45471	2.88321	4.38852	6.36087	7.6666	3.62969	17.2875	15.5265	7.60251	9.904	6.26728	5.09891	27.8738	20.5387	4.5278	5.211	6.39286	8.19506	3.47908	3.38829	25.2011	27.3279	21.5163	19.282
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061852 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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