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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061841 ID=TCONS_00061841|Name=TCONS_00061841|organism=Clytia hemisphaerica|type=transcript|length=2261bp
CAGATGGTGCATATGCTTTGGTGTGGGGAACGTGACAGTGACAGCTAAGC
GACTTGAAGGAATGGgatgaaaattttctctgaCTAATTAAAAGATACTC
ATGGACCAACAGTAAACTCCCTTTTGGTCAATTCTTGCCATcccaaagaa
aaactgaaaacataATACCCTCTCTGGCTTACAAAAAATAGCCAGGAATA
GGGagactctttaaaaaaaaataatttaccttGTGTGTAAAGTCTGATTC
CAAAATGTTGAAGAAATACTGTTTTGTAATCAAATACAACTTTCCTTCCA
CACACTCTACTCATCcaattttttctgtgttttctttCCAAAGCTGACGT
TTTGTTTTCCAATACGGTATTACATGATGTATATTACTTTCTTGCtgtaa
aaacaaaatagaggACAAATTCTCGGAAgttttcaaactgaaaattcaaa
attttaagtgctctacTAGAATTTAAATCCTGTATGTATGCAAAAGATCT
ATGCACCACAAGAAAGCCACACTTCTATACTTTTCATAACGATGCACACA
TTATATTTGGAAAATTCCAGGAGTAGCTACCTAACTTTAAATAAGACCCc
ctaaaatataaagaaaaagttatCCTTCAACTTTTCTTTGCCAAATCTTA
TCTCATAAGCGTGTTTCTTCTCTCTCTTGATATGTTTTGTGTAGTTCAAA
CATTCCACAAGGGCATAATGAAGGAAAAAAAGCTGAGGTTATTGATTAAC
CTTTAgacgccgagagacgtaccacgtacgtcatatatacataccgagag
acgtaccacgtacgttttgatactggggtcctttcaaagtttaataaaat
aaagaccagtttgaatttttctattctgtaaaatttagcagacaggatag
gggtgaaggttcattcatttaaaattttacgggtcctgcttttatacatc
tcgagatattggaactcaatgtcggtgtatttttcaaatgtcaacaaaac
atcGTTTTAGTGGTGGACTGAGggtgtttgatggatttttggactgaaaa
gtcatgtttatgtctggttttttcttcgtttcagcatataaatatcatta
tatgagatagagaacctttattgGCAGTTTCTATGTGGTTTGAAGGGGTT
TTAGGGGGTATTTCCTGCCTAAAATGCTAGATGCTAAATCTCTAACTCCA
ACAACTCAGGGCTGTTTTGCCTCAGTTTTTCCACTATTCTGGTGTTTTAT
TGCTTGAATTTACATGATAGAGAGTCTGTTATGATTATTGTAGTAATTTT
ACAGGCTTAGGGTAAGTGCAGGGCCAATTTTAGAGCAACAGGACGACTTA
ATTTACCTGTTGTGGCCAGAGTGTCGATTTTGGTGAGAAAGTGTGCTTCA
CCGAAACCGATTCTGAGATGAAATGAGCTTCTTCAGCCCtgaaacctcca
ttttcatgaaaaaaacagcggcagcagcgcgcgctgtttttaaaaacagc
ggtgtctaaaggttaataaacgattaatttgtatttttgtaattttttcc
gACATCATCAtactaaaaaatattcattcaaaaaatattcattcaaaaaa
tattcattcaaaaaatattcattcaaaaaatattcattcaaaaaatattc
attcaaaaaatattcattcaaaaaatattcattcaaaaaatattcattca
aaaatcatcaaagataACGTAAAACATCCATATCAGCACGGAAAGGGATA
CGAAGATGTTGTGCAGCTTTACCAAATGCATATGTTTGAAGTAAGCGGAT
ACGCTTACCTCCTCCCCGTCCTTTGCTTCCAAACATTTCGGGTGATATTT
TGTCCCATGTTAAATTGAAGAACGCTTTGTTGTTGGAAACAGCAATTATA
CAGGGATGGTTTGCATTTACAAATTTAAAACGGTCCACCAATCTATTTAT
GCACCTGCGATCACCAGGATGGAAAAGATAATTGGGGCTCATTCCAAGGG
TAAGTTCACCTACTCTTCCAAATTCACGGGCTCCTCCAAATTGCGAAACA
TACCAATCATCGTCTTCATTGACTCTCCATGAACCATCAAAAGGTCCTAC
GTTACTTGCTGCCATATTGAGGAGAAAAGAACTTTCATACTCGTACTTTC
ATTTTATACTCGACGTTCAGTCGATCGtcgacagctgattggttgcaagt
gattgtcatattttacgtcacttagaTACAACCAATCAGTTGTGTTAATT
ATCGATCGtcg Run BLAST on NCBI protein sequence of TCONS_00061841-protein >TCONS_00061841-protein ID=TCONS_00061841-protein|Name=TCONS_00061841-protein|organism=Clytia hemisphaerica|type=polypeptide|length=135bp
MAASNVGPFDGSWRVNEDDDWYVSQFGGAREFGRVGELTLGMSPNYLFHP
GDRRCINRLVDRFKFVNANHPCIIAVSNNKAFFNLTWDKISPEMFGSKGR
GGGKRIRLLQTYAFGKAAQHLRIPFRADMDVLRYL Run BLAST on NCBI transcript from alignment at scaffold_360:227407..229667 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061841 ID=TCONS_00061841|Name=TCONS_00061841|organism=Clytia hemisphaerica|type=transcript|length=2261bp|location=Sequence derived from alignment at scaffold_360:227407..229667 (Clytia hemisphaerica)
cgaCGATCGATAATTAACACAACTGATTGGTTGTAtctaagtgacgtaaa
atatgacaatcacttgcaaccaatcagctgtcgaCGATCGACTGAACGTC
GAGTATAAAATGAAAGTACGAGTATGAAAGTTCTTTTCTCCTCAATATGG
CAGCAAGTAACGTAGGACCTTTTGATGGTTCATGGAGAGTCAATGAAGAC
GATGATTGGTATGTTTCGCAATTTGGAGGAGCCCGTGAATTTGGAAGAGT
AGGTGAACTTACCCTTGGAATGAGCCCCAATTATCTTTTCCATCCTGGTG
ATCGCAGGTGCATAAATAGATTGGTGGACCGTTTTAAATTTGTAAATGCA
AACCATCCCTGTATAATTGCTGTTTCCAACAACAAAGCGTTCTTCAATTT
AACATGGGACAAAATATCACCCGAAATGTTTGGAAGCAAAGGACGGGGAG
GAGGTAAGCGTATCCGCTTACTTCAAACATATGCATTTGGTAAAGCTGCA
CAACATCTTCGTATCCCTTTCCGTGCTGATATGGATGTTTTACGTtatct
ttgatgatttttgaatgaatattttttgaatgaatattttttgaatgaat
attttttgaatgaatattttttgaatgaatattttttgaatgaatatttt
ttgaatgaatattttttgaatgaatattttttgaatgaatattttttagt
aTGATGATGTcggaaaaaattacaaaaatacaaattaatcgtttattaac
ctttagacaccgctgtttttaaaaacagcgcgcgctgctgccgctgtttt
tttcatgaaaatggaggtttcaGGGCTGAAGAAGCTCATTTCATCTCAGA
ATCGGTTTCGGTGAAGCACACTTTCTCACCAAAATCGACACTCTGGCCAC
AACAGGTAAATTAAGTCGTCCTGTTGCTCTAAAATTGGCCCTGCACTTAC
CCTAAGCCTGTAAAATTACTACAATAATCATAACAGACTCTCTATCATGT
AAATTCAAGCAATAAAACACCAGAATAGTGGAAAAACTGAGGCAAAACAG
CCCTGAGTTGTTGGAGTTAGAGATTTAGCATCTAGCATTTTAGGCAGGAA
ATACCCCCTAAAACCCCTTCAAACCACATAGAAACTGCcaataaaggttc
tctatctcatataatgatatttatatgctgaaacgaagaaaaaaccagac
ataaacatgacttttcagtccaaaaatccatcaaacaccCTCAGTCCACC
ACTAAAACgatgttttgttgacatttgaaaaatacaccgacattgagttc
caatatctcgagatgtataaaagcaggacccgtaaaattttaaatgaatg
aaccttcacccctatcctgtctgctaaattttacagaatagaaaaattca
aactggtctttattttattaaactttgaaaggaccccagtatcaaaacgt
acgtggtacgtctctcggtatgtatatatgacgtacgtggtacgtctctc
ggcgtcTAAAGGTTAATCAATAACCTCAGCTTTTTTTCCTTCATTATGCC
CTTGTGGAATGTTTGAACTACACAAAACATATCAAGAGAGAGAAGAAACA
CGCTTATGAGATAAGATTTGGCAAAGAAAAGTTGAAGGataactttttct
ttatattttaggGGGTCTTATTTAAAGTTAGGTAGCTACTCCTGGAATTT
TCCAAATATAATGTGTGCATCGTTATGAAAAGTATAGAAGTGTGGCTTTC
TTGTGGTGCATAGATCTTTTGCATACATACAGGATTTAAATTCTAgtaga
gcacttaaaattttgaattttcagtttgaaaacTTCCGAGAATTTGTcct
ctattttgtttttacaGCAAGAAAGTAATATACATCATGTAATACCGTAT
TGGAAAACAAAACGTCAGCTTTGGaaagaaaacacagaaaaaattgGATG
AGTAGAGTGTGTGGAAGGAAAGTTGTATTTGATTACAAAACAGTATTTCT
TCAACATTTTGGAATCAGACTTTACACACaaggtaaattattttttttta
aagagtctCCCTATTCCTGGCTATTTTTTGTAAGCCAGAGAGGGTATtat
gttttcagtttttctttgggATGGCAAGAATTGACCAAAAGGGAGTTTAC
TGTTGGTCCATGAGTATCTTTTAATTAGtcagagaaaattttcatcCCAT
TCCTTCAAGTCGCTTAGCTGTCACTGTCACGTTCCCCACACCAAAGCATA
TGCACCATCTG Coding sequence (CDS) from alignment at scaffold_360:227407..229667 >TCONS_00061841 ID=TCONS_00061841|Name=TCONS_00061841|organism=Clytia hemisphaerica|type=CDS|length=408bp|location=Sequence derived from alignment at scaffold_360:227407..229667 (Clytia hemisphaerica)
ATGGCAGCAAGTAACGTAGGACCTTTTGATGGTTCATGGAGAGTCAATGA
AGACGATGATTGGTATGTTTCGCAATTTGGAGGAGCCCGTGAATTTGGAA
GAGTAGGTGAACTTACCCTTGGAATGAGCCCCAATTATCTTTTCCATCCT
GGTGATCGCAGGTGCATAAATAGATTGGTGGACCGTTTTAAATTTGTAAA
TGCAAACCATCCCTGTATAATTGCTGTTTCCAACAACAAAGCGTTCTTCA
ATTTAACATGGGACAAAATATCACCCGAAATGTTTGGAAGCAAAGGACGG
GGAGGAGGTAAGCGTATCCGCTTACTTCAAACATATGCATTTGGTAAAGC
TGCACAACATCTTCGTATCCCTTTCCGTGCTGATATGGATGTTTTACGTt
atctttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061841-exon-scaffold_360-1491911889:227407..229667 | TCONS_00061841-exon-scaffold_360-1491911889:227407..229667 | Clytia hemisphaerica | exon |
| TCONS_00061841-exon-scaffold_360-1510915933:227407..229667 | TCONS_00061841-exon-scaffold_360-1510915933:227407..229667 | Clytia hemisphaerica | exon |
| TCONS_00061841-exon-scaffold_360-1575043694:227407..229667 | TCONS_00061841-exon-scaffold_360-1575043694:227407..229667 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_360 | supercontig | scaffold_360:227407..229667 . |
Blast
The following BLAST results are available for this feature:
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