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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061829 ID=TCONS_00061829|Name=TCONS_00061829|organism=Clytia hemisphaerica|type=transcript|length=1779bp
CCCTGAAATGATGAGAAATAATAAAGCCAAAAAATCTCCAGGGAACCTTA
CCCTCGTCTACTACTTCGTCATCTGTGTCTTCACTGTTATCCACATCAAG
AGTTGAAGAACTTGTAGCGTTAGGATTTGAAGACCTTCCGGCTTGTGCAT
ctgatgaaaataaagattatGATTATGATTTCAGTGTATTTCACATATAC
TAAAATATAGCACTTTGAGATTTATTTTTCTCGTCATTCATCattgaaat
ttataaatttagAAGCCAAAACtaaatgcaaaattttttttgaatacaCA
GTGTAAGATTATATTTTACCCTGGGAAACCTTTATACAGAGATAGGTAGG
AGGTATGAGAGGAGGTGATGTAGAGCTTGGCGAGCGAGATCATTATTTAT
ATTTAAACAGCAGTGTCCAAAAAATCGTGCAAATCAGGCCCTCTCACTTG
ATACAATTGTCATTGTTAATTTGACATTAGCTAATACTGACAATAATAAG
GTCCTCAATATCTCTTACTGTCAATCGCCAAACCAAGGGCAGCAAGGAAG
GTTTTAGTGTGCTCCTGTACATTTTCTTATATAATACCTAGGCTTGATTA
GAAAATGTTCCTGGAAGCTAAAACCTTTgagaaaacttaattttcaaatg
gaacttgaatgaaaacaaacacAGGAAAACACCATTTAAAACTTACCATT
CTTATCACAAAGGTCTAAGTGGTATTTGTACCATCTTTCGCTAGTGTATT
GTTTTCCACAGTGTGGACATTCAAATTGAggagttttttttagtttttag
agTCGTagcctttccaaaaatatgcTCTGGAATGTTTGGACTGTCTTGCT
CCACAAGAGTCACAATGTTTTTCTCATTTACAAATACCAACTTTGGTATT
TCTTTTAGCTTCACATTTTCATCACCATCACATAAATCTTCTTCATTAAC
CACTAAATCTCCACTATCAGTTTCATCATCACTTATACTTGTATCAACAT
CCAAATCTgattcactttcaaaactttcataATCACTCTCTACGTTCGCC
ATCTTGCCTGCTTCTGCTTGCCGCCTTTTCTCAACACTGAACTTTCGATT
TTGTTTTGCTGAGTTTGCGATATCGAATGGACgcttctgattggtcgaaa
GAATTATTGTGAAATCTGATTGGccgaaattaaataaaatacGGGAAAAG
ACGGAAACAATAGGAGACACAGATGggataatgaaaaaaatctataatca
ttccagccgcggctttcttatactatgctgtCACCTCACGTGACACAATT
AACACCAATCATATGATTGTTATATAAAATAGTATATAATTGACCTTCAG
AGTAAGAGCTATCATCTAGTCATGGTAGGATTTCTTGTTCCAATTGATGC
TGTATAGCTTTGTCTCCCGATTTCACTATCAGAAGGAGACAGTCCTGGAA
CATTTTGTTCTCAGTTTTCTTGAGAGTTGCTAGAGTTCGGATCGCACTGT
TGTTCGTTTCTTGCTCGTATCTTAATCAGCTGATTTTGATTCTTTCTATA
TGTCTTACTAAATACATGCCTTCCTTAGGGGGGGCCTGAAGTGTTATAAC
TCCtcataaaatttgcaaaaaaaaaattcctataGATAACTTAAGTGAGC
ACGGCTAAACTTCTATCCAGTTTGATACTCAATATGATCATATGATACGT
GGTTCatttatctggtaccagatgtggaaatatgctacgacacgctttgc
tctaaaggtcgggcatattttaacatctN Run BLAST on NCBI transcript from alignment at scaffold_360:26892..28670 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061829 ID=TCONS_00061829|Name=TCONS_00061829|organism=Clytia hemisphaerica|type=transcript|length=1779bp|location=Sequence derived from alignment at scaffold_360:26892..28670 (Clytia hemisphaerica)
Nagatgttaaaatatgcccgacctttagagcaaagcgtgtcgtagcatat
ttccacatctggtaccagataaatGAACCACGTATCATATGATCATATTG
AGTATCAAACTGGATAGAAGTTTAGCCGTGCTCACTTAAGTTATCtatag
gaattttttttttgcaaattttatgaGGAGTTATAACACTTCAGGCCCCC
CCTAAGGAAGGCATGTATTTAGTAAGACATATAGAAAGAATCAAAATCAG
CTGATTAAGATACGAGCAAGAAACGAACAACAGTGCGATCCGAACTCTAG
CAACTCTCAAGAAAACTGAGAACAAAATGTTCCAGGACTGTCTCCTTCTG
ATAGTGAAATCGGGAGACAAAGCTATACAGCATCAATTGGAACAAGAAAT
CCTACCATGACTAGATGATAGCTCTTACTCTGAAGGTCAATTATATACTA
TTTTATATAACAATCATATGATTGGTGTTAATTGTGTCACGTGAGGTGac
agcatagtataagaaagccgcggctggaatgattatagatttttttcatt
atccCATCTGTGTCTCCTATTGTTTCCGTCTTTTCCCgtattttatttaa
tttcggCCAATCAGATTTCACAATAATTCtttcgaccaatcagaagcGTC
CATTCGATATCGCAAACTCAGCAAAACAAAATCGAAAGTTCAGTGTTGAG
AAAAGGCGGCAAGCAGAAGCAGGCAAGATGGCGAACGTAGAGAGTGATta
tgaaagttttgaaagtgaatcAGATTTGGATGTTGATACAAGTATAAGTG
ATGATGAAACTGATAGTGGAGATTTAGTGGTTAATGAAGAAGATTTATGT
GATGGTGATGAAAATGTGAAGCTAAAAGAAATACCAAAGTTGGTATTTGT
AAATGAGAAAAACATTGTGACTCTTGTGGAGCAAGACAGTCCAAACATTC
CAGAgcatatttttggaaaggctACGActctaaaaactaaaaaaaactcc
TCAATTTGAATGTCCACACTGTGGAAAACAATACACTAGCGAAAGATGGT
ACAAATACCACTTAGACCTTTGTGATAAGAATGGTAAGTTTTAAATGGTG
TTTTCCTgtgtttgttttcattcaagttccatttgaaaattaagttttct
cAAAGGTTTTAGCTTCCAGGAACATTTTCTAATCAAGCCTAGGTATTATA
TAAGAAAATGTACAGGAGCACACTAAAACCTTCCTTGCTGCCCTTGGTTT
GGCGATTGACAGTAAGAGATATTGAGGACCTTATTATTGTCAGTATTAGC
TAATGTCAAATTAACAATGACAATTGTATCAAGTGAGAGGGCCTGATTTG
CACGATTTTTTGGACACTGCTGTTTAAATATAAATAATGATCTCGCTCGC
CAAGCTCTACATCACCTCCTCTCATACCTCCTACCTATCTCTGTATAAAG
GTTTCCCAGGGTAAAATATAATCTTACACTGtgtattcaaaaaaaatttt
gcatttaGTTTTGGCTTctaaatttataaatttcaatGATGAATGACGAG
AAAAATAAATCTCAAAGTGCTATATTTTAGTATATGTGAAATACACTGAA
ATCATAATCataatctttattttcatcagATGCACAAGCCGGAAGGTCTT
CAAATCCTAACGCTACAAGTTCTTCAACTCTTGATGTGGATAACAGTGAA
GACACAGATGACGAAGTAGTAGACGAGGGTAAGGTTCCCTGGAGATTTTT
TGGCTTTATTATTTCTCATCATTTCAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061829-exon-scaffold_360-1491911889:26892..28670 | TCONS_00061829-exon-scaffold_360-1491911889:26892..28670 | Clytia hemisphaerica | exon |
| TCONS_00061829-exon-scaffold_360-1510915933:26892..28670 | TCONS_00061829-exon-scaffold_360-1510915933:26892..28670 | Clytia hemisphaerica | exon |
| TCONS_00061829-exon-scaffold_360-1575043694:26892..28670 | TCONS_00061829-exon-scaffold_360-1575043694:26892..28670 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_360 | supercontig | scaffold_360:26892..28670 . |
Blast
The following BLAST results are available for this feature:
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