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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061778 ID=TCONS_00061778|Name=TCONS_00061778|organism=Clytia hemisphaerica|type=transcript|length=1936bp
AAGTTACATTTACACTCTACTTAgcttaaaaataaataacagaCAAGACA
GGTCTGTTAATTTGCAGCAAAGTAAGTTTCCCTTCATTGATGCAAGTTAT
GCCCCCTTTTcctgctttttcaaggaaatttaatttcaaatcaaattccA
TCTCTCACTTTTTAGAATCGATTCAGAGAGGAATTACGTACTTGGCAAAT
GCATTTGAGGAAGCTATTGTATATCCCTTTCACAATCTTGCTGAGCCCGG
TATTTCAGTTGGCAAATTAGCACGCTCTGTAAAGACAAAACTGTTGTCAT
TAAAACTGACAAACGAAGAAAATGCGGAGGAAGATTGTGATAAAGCCACC
ATTGTGTTTAGACAATACAGCTATCATTTGCTCTGTGTCTTTGAGAACGA
ATTGGTTAAAGATGCCAAAACAATTATAAAGAAAACTGCCAAATCATTCA
CAAAGTTTTATAATTATTGTGTCAGTGAAGATGAACTGAAAGAATGGGGA
GAATTTTTGTGTGGTTTGGAAATTAACACACATCCAATTTATTCCCAGCA
ACTGTTTAATTTTGTGATGAACTCATTTTTAAGACAATGTATCTCTGCTT
TGATAGCAGAAAATGAGAAAACCATCAGTCTCGAAGAAATTAAATTAAGC
AAAAGTGAGGAAGAGACATTATATTATGTAGCTGGGTATATTGTCTTTTC
attaaagaaaaatgtgaaaCATAAGCTTTCCCCAAACAGTAAGGCAACAA
TTTCTCTGTTGGAAACACGGGGTTGTAAAGGTGACAATGAGTTTGGCGAT
ATAACTATCGATGAGTACACCCGAGCCTGGTTGGAGAAAGTTAATCGTGG
TGGTTTGTTTCACGTCAATCAccaattttatgactttatcGTTTCAATCG
AAAAAACTGCAAGAACTGTATtgaacatttcttttttttcgaccTATACA
GGTCAAAACTTAAAGGAGGTGCTgcgtaaaaaatttgaaagtaacTTGGC
TATTCTAAATGCCTGGAAGCAGTTATCGTCAACCATAACaaccgcggctt
tcttatactatggtgacAGCTTTTCAATGTGATGATTTCACTCTAAAATC
AAAAGCTGATATATATTCATCTCAAATCTGAACCAAATTAGTTTATAAGG
TAGTTTAAAACTACATATCATGAACAATTAaagttttcaatgtttttaat
ttcaaggGCACAAGATTATTCAATGACATATTTGAAAACGAGCAAGATCC
TGATATAATGCATGATGCCGTTGAAAATGAGGTTAAAAAGAGTGATAATG
GTTTTAGTCAAggtattaaattttttaaacggattcttgtttttattgat
tttagacCTGAGGATGATCGTAAGATCGAAATATATATATTGTCCGAAAT
AAAATGTCACCATTGTTGgttcattttgaatatcttcttaaggtattaaa
atttaaaacatctttcttataaaattagCAAAAAGCAAACCAGAGGTAAC
CTGATGTGATATTTTTCTAATATGTTGAAAGCTTCGTTGGTTTCCTTCTT
TTTCTAGAGGAAGAACATGTATTGCGTGGATGAAATTCTATAGCTAGTGT
ACCAATTTTCCAAAGCTAGACTTAAAGGTTTATAATTGAATTATTATTTC
TATTACCAATAGAACCTCAGCCAGCTCCAACTCCAATACATATTTCAGGC
AAGTCTTCTTTGATGTGGTGAAAAGGTATGTTGACCGAAAAATACCTAAA
CGAGGGCACGTGTTAAACAGACTTATGACATCCGGACTGAAGTTAGATGG
AAAGATGGGGAGTATAACTGATGACGAAGTTTTCCAACAGTTTGGAAGAA
AGCTGGTTGAATGCAGAAGTGTTGTAATTTACAGCATCTCGGCAAATTTC
CCGGTAAAGATGACATTTTGATTATGCCAAAACGTG Run BLAST on NCBI transcript from alignment at scaffold_360:29004..30939+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061778 ID=TCONS_00061778|Name=TCONS_00061778|organism=Clytia hemisphaerica|type=transcript|length=1936bp|location=Sequence derived from alignment at scaffold_360:29004..30939+ (Clytia hemisphaerica)
AAGTTACATTTACACTCTACTTAgcttaaaaataaataacagaCAAGACA
GGTCTGTTAATTTGCAGCAAAGTAAGTTTCCCTTCATTGATGCAAGTTAT
GCCCCCTTTTcctgctttttcaaggaaatttaatttcaaatcaaattccA
TCTCTCACTTTTTAGAATCGATTCAGAGAGGAATTACGTACTTGGCAAAT
GCATTTGAGGAAGCTATTGTATATCCCTTTCACAATCTTGCTGAGCCCGG
TATTTCAGTTGGCAAATTAGCACGCTCTGTAAAGACAAAACTGTTGTCAT
TAAAACTGACAAACGAAGAAAATGCGGAGGAAGATTGTGATAAAGCCACC
ATTGTGTTTAGACAATACAGCTATCATTTGCTCTGTGTCTTTGAGAACGA
ATTGGTTAAAGATGCCAAAACAATTATAAAGAAAACTGCCAAATCATTCA
CAAAGTTTTATAATTATTGTGTCAGTGAAGATGAACTGAAAGAATGGGGA
GAATTTTTGTGTGGTTTGGAAATTAACACACATCCAATTTATTCCCAGCA
ACTGTTTAATTTTGTGATGAACTCATTTTTAAGACAATGTATCTCTGCTT
TGATAGCAGAAAATGAGAAAACCATCAGTCTCGAAGAAATTAAATTAAGC
AAAAGTGAGGAAGAGACATTATATTATGTAGCTGGGTATATTGTCTTTTC
attaaagaaaaatgtgaaaCATAAGCTTTCCCCAAACAGTAAGGCAACAA
TTTCTCTGTTGGAAACACGGGGTTGTAAAGGTGACAATGAGTTTGGCGAT
ATAACTATCGATGAGTACACCCGAGCCTGGTTGGAGAAAGTTAATCGTGG
TGGTTTGTTTCACGTCAATCAccaattttatgactttatcGTTTCAATCG
AAAAAACTGCAAGAACTGTATtgaacatttcttttttttcgaccTATACA
GGTCAAAACTTAAAGGAGGTGCTgcgtaaaaaatttgaaagtaacTTGGC
TATTCTAAATGCCTGGAAGCAGTTATCGTCAACCATAACaaccgcggctt
tcttatactatggtgacAGCTTTTCAATGTGATGATTTCACTCTAAAATC
AAAAGCTGATATATATTCATCTCAAATCTGAACCAAATTAGTTTATAAGG
TAGTTTAAAACTACATATCATGAACAATTAaagttttcaatgtttttaat
ttcaaggGCACAAGATTATTCAATGACATATTTGAAAACGAGCAAGATCC
TGATATAATGCATGATGCCGTTGAAAATGAGGTTAAAAAGAGTGATAATG
GTTTTAGTCAAggtattaaattttttaaacggattcttgtttttattgat
tttagacCTGAGGATGATCGTAAGATCGAAATATATATATTGTCCGAAAT
AAAATGTCACCATTGTTGgttcattttgaatatcttcttaaggtattaaa
atttaaaacatctttcttataaaattagCAAAAAGCAAACCAGAGGTAAC
CTGATGTGATATTTTTCTAATATGTTGAAAGCTTCGTTGGTTTCCTTCTT
TTTCTAGAGGAAGAACATGTATTGCGTGGATGAAATTCTATAGCTAGTGT
ACCAATTTTCCAAAGCTAGACTTAAAGGTTTATAATTGAATTATTATTTC
TATTACCAATAGAACCTCAGCCAGCTCCAACTCCAATACATATTTCAGGC
AAGTCTTCTTTGATGTGGTGAAAAGGTATGTTGACCGAAAAATACCTAAA
CGAGGGCACGTGTTAAACAGACTTATGACATCCGGACTGAAGTTAGATGG
AAAGATGGGGAGTATAACTGATGACGAAGTTTTCCAACAGTTTGGAAGAA
AGCTGGTTGAATGCAGAAGTGTTGTAATTTACAGCATCTCGGCAAATTTC
CCGGTAAAGATGACATTTTGATTATGCCAAAACGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061778-exon-scaffold_360-1491911889:29004..30939 | TCONS_00061778-exon-scaffold_360-1491911889:29004..30939 | Clytia hemisphaerica | exon |
| TCONS_00061778-exon-scaffold_360-1510915933:29004..30939 | TCONS_00061778-exon-scaffold_360-1510915933:29004..30939 | Clytia hemisphaerica | exon |
| TCONS_00061778-exon-scaffold_360-1575043694:29004..30939 | TCONS_00061778-exon-scaffold_360-1575043694:29004..30939 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_360 | supercontig | scaffold_360:29004..30939 + |
Blast
The following BLAST results are available for this feature:
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