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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061772 ID=TCONS_00061772|Name=TCONS_00061772|organism=Clytia hemisphaerica|type=transcript|length=1042bp
GGCGGCTATGTCAGCAAGGAGGATGATTTCATCCTTCCACTTGCTGATCT
TTTCGTTGATGTAGTTTCGTTTGTTTTCGTCTGTCCCAATGACCGCGCCT
AGATGACGTTCACCTTCAGTGGAGATCTGAATCTGTGTACCTACGAATAC
TTCGGTTTCTTCGGTGAGCTTGGTTTCTTTTACTATCAGCCAAGATTTCG
ATGGTTGCGGGAAGTATCCGTATGCAGGGCCAATTTCAAGGAGAAGGTCC
CACCATTGTTTGAGTGACTGGATGTCTCCTGCTGCGGTGATATCGTCTGC
AAAACCCACCATCTTGTTGTGTTTGTCGGCAATCGCCATCAGCANaaaaa
aaatcttttcgtaGCAGTTTTTCAGGTAGACTATCGCCTCTTCCCCTGGA
GTCGGGCCCAAAAAGAATTGTTGAACAGGAACATCTGGAGTGTCTTGTTG
CTGTCGGATTTCATTTTGTAGCAGTGGTGGTATCGGAGCAACTGGGGGTT
GCGGTGCAGCTGTAGGTTGTCTGACATCGTGTGGTCGTTGAACCGCGCCA
TTGCAGAATCGTAGATGTTGAAGTACACCCCTGTTTGATCGATAGCTCTT
ACCACATCGTCCACATCTTGCCTNATGTATTGCAGCTTCACTTCCCGATT
GACGCCCGCACATCTGCGCTTTGTTGGTTGCTTTGACGACGTCTTTGGAG
AAAGCTGACATGACAACCTTCCCCATAATTCGCCTCAGGACCTCTCCGAC
TCCAAATGGATCGTAGGCCCGGATTTTTGTCAAGCGGGACTAGTCTTGAT
GCCATCAATGGTGACAATGATGTTTCGTCGACTTCTTTGATGCAAATCGT
CTTGATCAGCTCAGCAATCGCTTTTCTGAGATCGGAGCCAGCATCTCCAT
AGTCGCGAGACATTAGGATTGGTCTCCACCCATCAGCATCCATTCCAGAT
GGACCCGAACCACCACGTGTGATCTTCGCTGCTTCATACACCATCTTTTC
GTCGATGACGTCAAATATTATGTTTTCGACCGTTGGAAGTGG Run BLAST on NCBI protein sequence of TCONS_00061772-protein >TCONS_00061772-protein ID=TCONS_00061772-protein|Name=TCONS_00061772-protein|organism=Clytia hemisphaerica|type=polypeptide|length=242bp
MGKVVMSAFSKDVVKATNKAQMCGRQSGSEAAIHXARCGRCGKSYRSNRG
VLQHLRFCNGAVQRPHDVRQPTAAPQPPVAPIPPLLQNEIRQQQDTPDVP
VQQFFLGPTPGEEAIVYLKNCYEKIFFXLMAIADKHNKMVGFADDITAAG
DIQSLKQWWDLLLEIGPAYGYFPQPSKSWLIVKETKLTEETEVFVGTQIQ
ISTEGERHLGAVIGTDENKRNYINEKISKWKDEIILLADIAA Run BLAST on NCBI transcript from alignment at scaffold_36:1501000..1502041 Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061772 ID=TCONS_00061772|Name=TCONS_00061772|organism=Clytia hemisphaerica|type=transcript|length=1042bp|location=Sequence derived from alignment at scaffold_36:1501000..1502041 (Clytia hemisphaerica)
CCACTTCCAACGGTCGAAAACATAATATTTGACGTCATCGACGAAAAGAT
GGTGTATGAAGCAGCGAAGATCACACGTGGTGGTTCGGGTCCATCTGGAA
TGGATGCTGATGGGTGGAGACCAATCCTAATGTCTCGCGACTATGGAGAT
GCTGGCTCCGATCTCAGAAAAGCGATTGCTGAGCTGATCAAGACGATTTG
CATCAAAGAAGTCGACGAAACATCATTGTCACCATTGATGGCATCAAGAC
TAGTCCCGCTTGACAAAAATCCGGGCCTACGATCCATTTGGAGTCGGAGA
GGTCCTGAGGCGAATTATGGGGAAGGTTGTCATGTCAGCTTTCTCCAAAG
ACGTCGTCAAAGCAACCAACAAAGCGCAGATGTGCGGGCGTCAATCGGGA
AGTGAAGCTGCAATACATNAGGCAAGATGTGGACGATGTGGTAAGAGCTA
TCGATCAAACAGGGGTGTACTTCAACATCTACGATTCTGCAATGGCGCGG
TTCAACGACCACACGATGTCAGACAACCTACAGCTGCACCGCAACCCCCA
GTTGCTCCGATACCACCACTGCTACAAAATGAAATCCGACAGCAACAAGA
CACTCCAGATGTTCCTGTTCAACAATTCTTTTTGGGCCCGACTCCAGGGG
AAGAGGCGATAGTCTACCTGAAAAACTGCtacgaaaagattttttttNTG
CTGATGGCGATTGCCGACAAACACAACAAGATGGTGGGTTTTGCAGACGA
TATCACCGCAGCAGGAGACATCCAGTCACTCAAACAATGGTGGGACCTTC
TCCTTGAAATTGGCCCTGCATACGGATACTTCCCGCAACCATCGAAATCT
TGGCTGATAGTAAAAGAAACCAAGCTCACCGAAGAAACCGAAGTATTCGT
AGGTACACAGATTCAGATCTCCACTGAAGGTGAACGTCATCTAGGCGCGG
TCATTGGGACAGACGAAAACAAACGAAACTACATCAACGAAAAGATCAGC
AAGTGGAAGGATGAAATCATCCTCCTTGCTGACATAGCCGCC Coding sequence (CDS) from alignment at scaffold_36:1501000..1502041 >TCONS_00061772 ID=TCONS_00061772|Name=TCONS_00061772|organism=Clytia hemisphaerica|type=CDS|length=726bp|location=Sequence derived from alignment at scaffold_36:1501000..1502041 (Clytia hemisphaerica)
ATGGGGAAGGTTGTCATGTCAGCTTTCTCCAAAGACGTCGTCAAAGCAAC
CAACAAAGCGCAGATGTGCGGGCGTCAATCGGGAAGTGAAGCTGCAATAC
ATNAGGCAAGATGTGGACGATGTGGTAAGAGCTATCGATCAAACAGGGGT
GTACTTCAACATCTACGATTCTGCAATGGCGCGGTTCAACGACCACACGA
TGTCAGACAACCTACAGCTGCACCGCAACCCCCAGTTGCTCCGATACCAC
CACTGCTACAAAATGAAATCCGACAGCAACAAGACACTCCAGATGTTCCT
GTTCAACAATTCTTTTTGGGCCCGACTCCAGGGGAAGAGGCGATAGTCTA
CCTGAAAAACTGCtacgaaaagattttttttNTGCTGATGGCGATTGCCG
ACAAACACAACAAGATGGTGGGTTTTGCAGACGATATCACCGCAGCAGGA
GACATCCAGTCACTCAAACAATGGTGGGACCTTCTCCTTGAAATTGGCCC
TGCATACGGATACTTCCCGCAACCATCGAAATCTTGGCTGATAGTAAAAG
AAACCAAGCTCACCGAAGAAACCGAAGTATTCGTAGGTACACAGATTCAG
ATCTCCACTGAAGGTGAACGTCATCTAGGCGCGGTCATTGGGACAGACGA
AAACAAACGAAACTACATCAACGAAAAGATCAGCAAGTGGAAGGATGAAA
TCATCCTCCTTGCTGACATAGCCGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061772-exon-scaffold_36-1491911889:1501000..1502041 | TCONS_00061772-exon-scaffold_36-1491911889:1501000..1502041 | Clytia hemisphaerica | exon |
| TCONS_00061772-exon-scaffold_36-1510915933:1501000..1502041 | TCONS_00061772-exon-scaffold_36-1510915933:1501000..1502041 | Clytia hemisphaerica | exon |
| TCONS_00061772-exon-scaffold_36-1575043694:1501000..1502041 | TCONS_00061772-exon-scaffold_36-1575043694:1501000..1502041 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:1501000..1502041 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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