TCONS_00061753 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061753
Unique NameTCONS_00061753
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length867

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061753 ID=TCONS_00061753|Name=TCONS_00061753|organism=Clytia hemisphaerica|type=transcript|length=867bp
ACCAGACTCTATCAActcaaaagtcatcttttaaagaacaaaatatttca
aagatgaAAGTGGTGACGCATAAACACACAAACACACAAAAATATATACA
ACCATACATACAAACAATGGCTATCAATAACATAAAAGTGTCGCACTAGA
TATCAAGGGAGATTCAGGAGAACCCTCCCTGATTCCTCGCCGGACACTAA
AACAGTCTTCCTTAAGAGGGTGATAATAAAAGATAACCCTAATACAAAag
acataaaaaaaatcaaaaaagttttaaatatctaaattttgatatattaa
aaattttctaCGTACAAGATAAAATTTGCCCAGATTATATTACCTGTATG
CAATCTACCtgttgaaaaataaatcaacaTTATACTGCGACGTCAATTTT
gtaacaaattgaaaaaaagtactCGTACTAAAACAACGATAATTGCTTTT
GTAATCAAGTTATAGATTTCAAATTTCAGGAGACGATGGAAACTAGGTAA
GTAAAAATCCCTGTGAAAATTATAAAGTAAGCTCGATAAATTTTAAAGAT
AcgtcaaaaataaattatgtTGCGTTTTTTTTGGTCCACCCGGCTGAATG
CCACTCTTTAGTATAAAACAAGTATTACTAAACCTGTTTTATATGGCTTA
GTGCAATTGACATGGAGTAGTCAAGTGTAATTTTCATGCAACCACATCAC
CAACAAAACTTGATATCCTCGTTATCAAAATAGTCACAATCTTGGCTATT
TTCGACGGCGGGACGgtagttaaaaaaacaaaaaatgttatattttggaa
taataatgaaaaaagaagtaaaaaaaataaagtaaaaaaaaagagaaaga
aaacgaagaagaatgAG
Run BLAST on NCBI

transcript from alignment at scaffold_36:1198802..1199668

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061753 ID=TCONS_00061753|Name=TCONS_00061753|organism=Clytia hemisphaerica|type=transcript|length=867bp|location=Sequence derived from alignment at scaffold_36:1198802..1199668 (Clytia hemisphaerica)
CTcattcttcttcgttttctttctctttttttttactttattttttttac
ttcttttttcattattattccaaaatataacattttttgtttttttaact
acCGTCCCGCCGTCGAAAATAGCCAAGATTGTGACTATTTTGATAACGAG
GATATCAAGTTTTGTTGGTGATGTGGTTGCATGAAAATTACACTTGACTA
CTCCATGTCAATTGCACTAAGCCATATAAAACAGGTTTAGTAATACTTGT
TTTATACTAAAGAGTGGCATTCAGCCGGGTGGACCAAAAAAAACGCAaca
taatttatttttgacgTATCTTTAAAATTTATCGAGCTTACTTTATAATT
TTCACAGGGATTTTTACTTACCTAGTTTCCATCGTCTCCTGAAATTTGAA
ATCTATAACTTGATTACAAAAGCAATTATCGTTGTTTTAGTACGagtact
ttttttcaatttgttacAAAATTGACGTCGCAGTATAAtgttgatttatt
tttcaacaGGTAGATTGCATACAGGTAATATAATCTGGGCAAATTTTATC
TTGTACGtagaaaatttttaatatatcaaaatttagatatttaaaacttt
tttgattttttttatgtctTTTGTATTAGGGTTATCTTTTATTATCACCC
TCTTAAGGAAGACTGTTTTAGTGTCCGGCGAGGAATCAGGGAGGGTTCTC
CTGAATCTCCCTTGATATCTAGTGCGACACTTTTATGTTATTGATAGCCA
TTGTTTGTATGTATGGTTGTATATATTTTTGTGTGTTTGTGTGTTTATGC
GTCACCACTTtcatctttgaaatattttgttctttaaaagatgacttttg
agTTGATAGAGTCTGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038743XLOC_038743Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061753-exon-scaffold_36-1491911889:1198802..1199668TCONS_00061753-exon-scaffold_36-1491911889:1198802..1199668Clytia hemisphaericaexon
TCONS_00061753-exon-scaffold_36-1510915933:1198802..1199668TCONS_00061753-exon-scaffold_36-1510915933:1198802..1199668Clytia hemisphaericaexon
TCONS_00061753-exon-scaffold_36-1575043694:1198802..1199668TCONS_00061753-exon-scaffold_36-1575043694:1198802..1199668Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:1198802..1199668 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.539175	0.420625	0.0610482	0.358357	1.96319	1.83863	1.66367	1.55751	0.954141	0.787905	0.928637	0.789993	0.824754	0.782035	0.734788	0.591405	0.809514	1.24459	0.917049	0.719719	0.573436	0.610259	0.80367	0.730653	1.44722	1.4466	0.517522	0.789019	0.658287	0.853606
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061753 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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