TCONS_00061750 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061750
Unique NameTCONS_00061750
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length469

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061750 ID=TCONS_00061750|Name=TCONS_00061750|organism=Clytia hemisphaerica|type=transcript|length=469bp
TTCAGCTCGAAAAATCCTTTTCCGGGGTGTCTACGGAATTGTTCTCATTA
GTTGCAAGGTTTTAAGTTTTGTAGGGTCAAATTTTAGGCATTCTTCACGG
TTTTCGGTTCATTTATTGAGTATCTTTAAAGTTTCTCGGGACTCCATTTG
ATTTTGACTGGTAGTACAATACTCTTGATGAACGAGGTGTGTATAAAAGA
TTATTCTGTAGTATTCTCGAGATTACGACAGAAACGAGAGAAGCAAGCac
gcaattttttggaaattttgcttGTATAGAAAGAGACTtcggaagaaaaa
aaaattcgaacctaagacaaaatgctttttttcaaggttttcaaggaatG
CCTTTAGATTATATACACTTTTCAAGGTTGTTTGGACCATTTTAAAGTTT
CTTCTTTTCtccttttcaaggttttcaaggtcctgTAGTCACTctctttt
caataatttgaagcaaatg
Run BLAST on NCBI

transcript from alignment at scaffold_36:1159275..1159743

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061750 ID=TCONS_00061750|Name=TCONS_00061750|organism=Clytia hemisphaerica|type=transcript|length=469bp|location=Sequence derived from alignment at scaffold_36:1159275..1159743 (Clytia hemisphaerica)
catttgcttcaaattattgaaaagagAGTGACTAcaggaccttgaaaacc
ttgaaaaggaGAAAAGAAGAAACTTTAAAATGGTCCAAACAACCTTGAAA
AGTGTATATAATCTAAAGGCattccttgaaaaccttgaaaaaaagcattt
tgtcttaggttcgaatttttttttcttccgaAGTCTCTTTCTATACaagc
aaaatttccaaaaaattgcgtGCTTGCTTCTCTCGTTTCTGTCGTAATCT
CGAGAATACTACAGAATAATCTTTTATACACACCTCGTTCATCAAGAGTA
TTGTACTACCAGTCAAAATCAAATGGAGTCCCGAGAAACTTTAAAGATAC
TCAATAAATGAACCGAAAACCGTGAAGAATGCCTAAAATTTGACCCTACA
AAACTTAAAACCTTGCAACTAATGAGAACAATTCCGTAGACACCCCGGAA
AAGGATTTTTCGAGCTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038740XLOC_038740Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061750-exon-scaffold_36-1491911889:1159275..1159743TCONS_00061750-exon-scaffold_36-1491911889:1159275..1159743Clytia hemisphaericaexon
TCONS_00061750-exon-scaffold_36-1510915933:1159275..1159743TCONS_00061750-exon-scaffold_36-1510915933:1159275..1159743Clytia hemisphaericaexon
TCONS_00061750-exon-scaffold_36-1575043694:1159275..1159743TCONS_00061750-exon-scaffold_36-1575043694:1159275..1159743Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:1159275..1159743 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.272906	0	0.617996	0.341916	0.184014	0.145411	0.175432	0.164237	0.689917	0.142429	0.138245	0.545261	0.0907505	0.0942453	0	0.166301	0	0.104992	0.290105	0.151787	0.527721	0	0	0.201209	0.293007	0.130751	0.187104	0	0.151452	0.308611
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061750 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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