TCONS_00061748 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061748
Unique NameTCONS_00061748
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length639

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061748 ID=TCONS_00061748|Name=TCONS_00061748|organism=Clytia hemisphaerica|type=transcript|length=639bp
GTTTTTCATGTTTATGGATAGTTTCCAAGCAGATTATTTGATCGAAAATG
GCTTTAACCTCACCGATTCTATCACCAGCAAACCTACCAAAACATTTCtc
aaaacaaggaaaaagaaactttttctgtGTCAAGACATCTATCATCTCGG
TCTATGCATCCATGAGGGCAAAATCACTCTAAAACTTGCATCAGAGATTC
TCAAACCAGGCTTCGTGAAATACCCGGCATTCACAGACAATTTTAGCTCG
GAAATACTAGAAACACTCCATCAAATCTTGCAATCTAACAAAAAATTGCA
TGAGGAAAATACAGATCTAAAATCACGTATCACAAAATTAGAGAAAAAGA
CAGAAGACTCTACTTCCATTATCAAAGATCTCAATAAAACAATCAAGGAA
CTATCGAACCAAATCAAACTTCCAGGACCCAAACCTGCTTTATCACCACC
ATCAGAAAAATCTCCAAACAGCTCCAACCTATACAGCCCATCGCACCCAC
ACCAAAAGAACCGTGCCCAGACAAGTTTTCCTAACAAACCGACATCAACA
ACGGCTACTTTCTCCCAAGTGCTCTCAGATATCCCCTTTGATGAATCGCT
TATCCAACCAGAACCAATACTACAACAACAGAAATCGAC
Run BLAST on NCBI

protein sequence of TCONS_00061748-protein

>TCONS_00061748-protein ID=TCONS_00061748-protein|Name=TCONS_00061748-protein|organism=Clytia hemisphaerica|type=polypeptide|length=212bp
FFMFMDSFQADYLIENGFNLTDSITSKPTKTFLKTRKKKLFLCQDIYHLG
LCIHEGKITLKLASEILKPGFVKYPAFTDNFSSEILETLHQILQSNKKLH
EENTDLKSRITKLEKKTEDSTSIIKDLNKTIKELSNQIKLPGPKPALSPP
SEKSPNSSNLYSPSHPHQKNRAQTSFPNKPTSTTATFSQVLSDIPFDESL
IQPEPILQQQKS
Run BLAST on NCBI

transcript from alignment at scaffold_36:1119742..1120380

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061748 ID=TCONS_00061748|Name=TCONS_00061748|organism=Clytia hemisphaerica|type=transcript|length=639bp|location=Sequence derived from alignment at scaffold_36:1119742..1120380 (Clytia hemisphaerica)
GTCGATTTCTGTTGTTGTAGTATTGGTTCTGGTTGGATAAGCGATTCATC
AAAGGGGATATCTGAGAGCACTTGGGAGAAAGTAGCCGTTGTTGATGTCG
GTTTGTTAGGAAAACTTGTCTGGGCACGGTTCTTTTGGTGTGGGTGCGAT
GGGCTGTATAGGTTGGAGCTGTTTGGAGATTTTTCTGATGGTGGTGATAA
AGCAGGTTTGGGTCCTGGAAGTTTGATTTGGTTCGATAGTTCCTTGATTG
TTTTATTGAGATCTTTGATAATGGAAGTAGAGTCTTCTGTCTTTTTCTCT
AATTTTGTGATACGTGATTTTAGATCTGTATTTTCCTCATGCAATTTTTT
GTTAGATTGCAAGATTTGATGGAGTGTTTCTAGTATTTCCGAGCTAAAAT
TGTCTGTGAATGCCGGGTATTTCACGAAGCCTGGTTTGAGAATCTCTGAT
GCAAGTTTTAGAGTGATTTTGCCCTCATGGATGCATAGACCGAGATGATA
GATGTCTTGACacagaaaaagtttctttttccttgttttgaGAAATGTTT
TGGTAGGTTTGCTGGTGATAGAATCGGTGAGGTTAAAGCCATTTTCGATC
AAATAATCTGCTTGGAAACTATCCATAAACATGAAAAAC

Coding sequence (CDS) from alignment at scaffold_36:1119742..1120380

>TCONS_00061748 ID=TCONS_00061748|Name=TCONS_00061748|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at scaffold_36:1119742..1120380 (Clytia hemisphaerica)
CGATTTCTGTTGTTGTAGTATTGGTTCTGGTTGGATAAGCGATTCATCAA
AGGGGATATCTGAGAGCACTTGGGAGAAAGTAGCCGTTGTTGATGTCGGT
TTGTTAGGAAAACTTGTCTGGGCACGGTTCTTTTGGTGTGGGTGCGATGG
GCTGTATAGGTTGGAGCTGTTTGGAGATTTTTCTGATGGTGGTGATAAAG
CAGGTTTGGGTCCTGGAAGTTTGATTTGGTTCGATAGTTCCTTGATTGTT
TTATTGAGATCTTTGATAATGGAAGTAGAGTCTTCTGTCTTTTTCTCTAA
TTTTGTGATACGTGATTTTAGATCTGTATTTTCCTCATGCAATTTTTTGT
TAGATTGCAAGATTTGATGGAGTGTTTCTAGTATTTCCGAGCTAAAATTG
TCTGTGAATGCCGGGTATTTCACGAAGCCTGGTTTGAGAATCTCTGATGC
AAGTTTTAGAGTGATTTTGCCCTCATGGATGCATAGACCGAGATGATAGA
TGTCTTGACacagaaaaagtttctttttccttgttttgaGAAATGTTTTG
GTAGGTTTGCTGGTGATAGAATCGGTGAGGTTAAAGCCATTTTCGATCAA
ATAATCTGCTTGGAAACTATCCATAAACATGAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038738XLOC_038738Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061748-proteinTCONS_00061748-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061748-exon-scaffold_36-1491911889:1119742..1120380TCONS_00061748-exon-scaffold_36-1491911889:1119742..1120380Clytia hemisphaericaexon
TCONS_00061748-exon-scaffold_36-1510915933:1119742..1120380TCONS_00061748-exon-scaffold_36-1510915933:1119742..1120380Clytia hemisphaericaexon
TCONS_00061748-exon-scaffold_36-1575043694:1119742..1120380TCONS_00061748-exon-scaffold_36-1575043694:1119742..1120380Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:1119742..1120380 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.165013	0.402284	0	0	0.111264	0.263768	0.21215	0.0993061	0.347633	0.0861198	0.08359	0.549488	0.274362	0.341913	0	0.201108	0.309686	0	0.175412	0.0917781	0.0797718	0	0	0	0	0.158117	0.226265	0	0	0.0933011
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR009395BLOC1S1
Vocabulary: Cellular Component
TermDefinition
GO:0031083BLOC-1 complex
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0031083 BLOC-1 complex
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061748 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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