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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061747 ID=TCONS_00061747|Name=TCONS_00061747|organism=Clytia hemisphaerica|type=transcript|length=2166bp
GTGGATACAAGGGAAACAGCTTATATGTTGACTCTCTAACGCAAAAATAT
GACTGCATTTACATAAACGAACTATGGACCACTAATGCAGAAGAACATCT
TCTTGACCATTACAAAAACGATTTCAAAGTTATCTTTCAACCAGCTAAAA
AAAACCATACCGGTAGACCTTACGGGGGCTCAGTCCTCTTACTAAGAAAA
CAATCATTCAAGTCCATTACCACCATAATTAAAGAAGACTATTCGATAAC
AGTCAAagcaaaatcagaaaataactATCCCATTCTAATCACTGGCGTAT
ACCTACAATCGCTATCATCAAACGTTGAATGCATAGACACATACAAAGAA
CAATTAGCTGCTATCTCCGGCATTACTGAACAGTTTATAGAATCGTGTGA
AACTATAATATTAGGCGACTTCCAGTCCTGCCCAACTATTGAATCAAACC
GGACCGCCCAACCAAACAGACTCTCTAAACATCTAAAAGAATTCATTGAA
GAAAACAATTTCACGCCTATTGACATGACCCAAGGTAGGGGTCCAAATTA
TTCGTACCAGCACTTGTCGTTACCAAACCGTTCATATATTGACCATATCG
TGATATCCAGCAATCTTATCCAGCATACCATTGAGTCAGAAGTACTAGAA
CCATCACCCACTAACACAAGTGACCACTTACCAGTTACAGCATCATTCTC
CTTTCCAAAACTGAGCGAACCGTTGACCGATCAACAGAACTACGACCAAA
ACCCAAATTATCATAACCACATTCCAAATTATCTATGGAAAAATGATCGA
TTCCTGTCCATCTACAAAGACAAAGTATCATCTTCAATCCAACTTCTTGA
AACCAACACCGGCAACCTAGAAACTGAAATACAAAACCTTAACTCACTAC
TTCTGAGGTGTGCATCGGAAAGTTTCTCCCAATTTAGTAAAGGATTTTTT
CGCTTCCCAGCTAAAAAATGGTGGAACCAAGATCTTACTAGAGCACGAAC
AAAACTTAGCCAAATGTTCAACATCTGGAGAGATAAAGAGTTTCCACGCG
ACCTAGATGATGTTTCATACCAAAGATACCTATTTGCCAGAAAGTACTTC
AGAACACTAGTGAAACGTTACAAGAACCAATCAAATGTAGACCACTATAT
AAATGTAGATAAACTGCAACACACACATCCCAAATCTTATTGGAAGAAAA
TCAGATTGAACAGTAACTCAACTCAAAAACTTTTCACCATAAATGGAAAA
ACAACAAACTCAGAAATTGCGTCTGAATTTCATGACCATTTTTGTAACCT
CCTAAACAAACCCAGGACACCCAATATCGATAATATGGAATCAAAGACAC
ATcttcaaaaattactttcagaCTTAGAAAACTCCCCAGCTCCAAACTTT
TATGTTTCAGAATGCGATGTTGAAAATGCAATTAAGAAACTCTCTAAAGA
TAAGACCCGAGACCCATTTCAACTAAAATCAGAACACTTCATACATTCAC
TAGATACCATCTCACTTCAATACCTTACCAAGCTGATCAACAATATCTTT
CAATCAACTGAATTACCATCAAGCTTATGTACCTCTTTGATAATTCCATT
AGTGAAATCATACAAAAAGTCTCTATGTGATCCCAATAATTATAGAGGCA
TCAGTATCATCCCTGTCATGACGAAGATTATCGAACTTGTCATTCTACAA
ATGTTTCCGTCAATCAAAGACCACGACCCATCCCAGTTCGGTTTTGTCAC
AGGCTCTTCCACAATCCATGCGGAAATTCTAATTCAAGACACCATCAACC
ACTACAACTCAAAAAACTCACCGATATTCATTTGTAGTCTTGACGCTGAA
AAGGCGTTTGATTGTTGTAATTGGTGGAAGCTATTTGATaaactttgttt
taaaaaagGCACTCCTTCTCCTGTTCTTAAAGTACTGATACAACTCTACC
TAAAAAGTGAGTCATCCGTCATATACAACAACTGCCATACAAAATCCTTC
AAAATGAGCCAAGGAGTAAAACAAGGCTCCCTCTTGTCTCCATACTTATA
TAGCCTTTACACTGAAAACCTattaaaagaaattaaatccATGAACATCG
GCACCTTTATCGGAGATATAAACACTTCCATAATTGTATACGCAGACGAT
ATTATTCTCATCAGTC Run BLAST on NCBI protein sequence of TCONS_00061747-protein >TCONS_00061747-protein ID=TCONS_00061747-protein|Name=TCONS_00061747-protein|organism=Clytia hemisphaerica|type=polypeptide|length=721bp
GYKGNSLYVDSLTQKYDCIYINELWTTNAEEHLLDHYKNDFKVIFQPAKK
NHTGRPYGGSVLLLRKQSFKSITTIIKEDYSITVKAKSENNYPILITGVY
LQSLSSNVECIDTYKEQLAAISGITEQFIESCETIILGDFQSCPTIESNR
TAQPNRLSKHLKEFIEENNFTPIDMTQGRGPNYSYQHLSLPNRSYIDHIV
ISSNLIQHTIESEVLEPSPTNTSDHLPVTASFSFPKLSEPLTDQQNYDQN
PNYHNHIPNYLWKNDRFLSIYKDKVSSSIQLLETNTGNLETEIQNLNSLL
LRCASESFSQFSKGFFRFPAKKWWNQDLTRARTKLSQMFNIWRDKEFPRD
LDDVSYQRYLFARKYFRTLVKRYKNQSNVDHYINVDKLQHTHPKSYWKKI
RLNSNSTQKLFTINGKTTNSEIASEFHDHFCNLLNKPRTPNIDNMESKTH
LQKLLSDLENSPAPNFYVSECDVENAIKKLSKDKTRDPFQLKSEHFIHSL
DTISLQYLTKLINNIFQSTELPSSLCTSLIIPLVKSYKKSLCDPNNYRGI
SIIPVMTKIIELVILQMFPSIKDHDPSQFGFVTGSSTIHAEILIQDTINH
YNSKNSPIFICSLDAEKAFDCCNWWKLFDKLCFKKGTPSPVLKVLIQLYL
KSESSVIYNNCHTKSFKMSQGVKQGSLLSPYLYSLYTENLLKEIKSMNIG
TFIGDINTSIIVYADDIILIS Run BLAST on NCBI transcript from alignment at scaffold_36:1117102..1119267 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061747 ID=TCONS_00061747|Name=TCONS_00061747|organism=Clytia hemisphaerica|type=transcript|length=2166bp|location=Sequence derived from alignment at scaffold_36:1117102..1119267 (Clytia hemisphaerica)
GACTGATGAGAATAATATCGTCTGCGTATACAATTATGGAAGTGTTTATA
TCTCCGATAAAGGTGCCGATGTTCATggatttaatttcttttaatAGGTT
TTCAGTGTAAAGGCTATATAAGTATGGAGACAAGAGGGAGCCTTGTTTTA
CTCCTTGGCTCATTTTGAAGGATTTTGTATGGCAGTTGTTGTATATGACG
GATGACTCACTTTTTAGGTAGAGTTGTATCAGTACTTTAAGAACAGGAGA
AGGAGTGCcttttttaaaacaaagtttATCAAATAGCTTCCACCAATTAC
AACAATCAAACGCCTTTTCAGCGTCAAGACTACAAATGAATATCGGTGAG
TTTTTTGAGTTGTAGTGGTTGATGGTGTCTTGAATTAGAATTTCCGCATG
GATTGTGGAAGAGCCTGTGACAAAACCGAACTGGGATGGGTCGTGGTCTT
TGATTGACGGAAACATTTGTAGAATGACAAGTTCGATAATCTTCGTCATG
ACAGGGATGATACTGATGCCTCTATAATTATTGGGATCACATAGAGACTT
TTTGTATGATTTCACTAATGGAATTATCAAAGAGGTACATAAGCTTGATG
GTAATTCAGTTGATTGAAAGATATTGTTGATCAGCTTGGTAAGGTATTGA
AGTGAGATGGTATCTAGTGAATGTATGAAGTGTTCTGATTTTAGTTGAAA
TGGGTCTCGGGTCTTATCTTTAGAGAGTTTCTTAATTGCATTTTCAACAT
CGCATTCTGAAACATAAAAGTTTGGAGCTGGGGAGTTTTCTAAGtctgaa
agtaatttttgaagATGTGTCTTTGATTCCATATTATCGATATTGGGTGT
CCTGGGTTTGTTTAGGAGGTTACAAAAATGGTCATGAAATTCAGACGCAA
TTTCTGAGTTTGTTGTTTTTCCATTTATGGTGAAAAGTTTTTGAGTTGAG
TTACTGTTCAATCTGATTTTCTTCCAATAAGATTTGGGATGTGTGTGTTG
CAGTTTATCTACATTTATATAGTGGTCTACATTTGATTGGTTCTTGTAAC
GTTTCACTAGTGTTCTGAAGTACTTTCTGGCAAATAGGTATCTTTGGTAT
GAAACATCATCTAGGTCGCGTGGAAACTCTTTATCTCTCCAGATGTTGAA
CATTTGGCTAAGTTTTGTTCGTGCTCTAGTAAGATCTTGGTTCCACCATT
TTTTAGCTGGGAAGCGAAAAAATCCTTTACTAAATTGGGAGAAACTTTCC
GATGCACACCTCAGAAGTAGTGAGTTAAGGTTTTGTATTTCAGTTTCTAG
GTTGCCGGTGTTGGTTTCAAGAAGTTGGATTGAAGATGATACTTTGTCTT
TGTAGATGGACAGGAATCGATCATTTTTCCATAGATAATTTGGAATGTGG
TTATGATAATTTGGGTTTTGGTCGTAGTTCTGTTGATCGGTCAACGGTTC
GCTCAGTTTTGGAAAGGAGAATGATGCTGTAACTGGTAAGTGGTCACTTG
TGTTAGTGGGTGATGGTTCTAGTACTTCTGACTCAATGGTATGCTGGATA
AGATTGCTGGATATCACGATATGGTCAATATATGAACGGTTTGGTAACGA
CAAGTGCTGGTACGAATAATTTGGACCCCTACCTTGGGTCATGTCAATAG
GCGTGAAATTGTTTTCTTCAATGAATTCTTTTAGATGTTTAGAGAGTCTG
TTTGGTTGGGCGGTCCGGTTTGATTCAATAGTTGGGCAGGACTGGAAGTC
GCCTAATATTATAGTTTCACACGATTCTATAAACTGTTCAGTAATGCCGG
AGATAGCAGCTAATTGTTCTTTGTATGTGTCTATGCATTCAACGTTTGAT
GATAGCGATTGTAGGTATACGCCAGTGATTAGAATGGGATagttattttc
tgattttgctTTGACTGTTATCGAATAGTCTTCTTTAATTATGGTGGTAA
TGGACTTGAATGATTGTTTTCTTAGTAAGAGGACTGAGCCCCCGTAAGGT
CTACCGGTATGGTTTTTTTTAGCTGGTTGAAAGATAACTTTGAAATCGTT
TTTGTAATGGTCAAGAAGATGTTCTTCTGCATTAGTGGTCCATAGTTCGT
TTATGTAAATGCAGTCATATTTTTGCGTTAGAGAGTCAACATATAAGCTG
TTTCCCTTGTATCCAC Coding sequence (CDS) from alignment at scaffold_36:1117102..1119267 >TCONS_00061747 ID=TCONS_00061747|Name=TCONS_00061747|organism=Clytia hemisphaerica|type=CDS|length=2163bp|location=Sequence derived from alignment at scaffold_36:1117102..1119267 (Clytia hemisphaerica)
ACTGATGAGAATAATATCGTCTGCGTATACAATTATGGAAGTGTTTATAT
CTCCGATAAAGGTGCCGATGTTCATggatttaatttcttttaatAGGTTT
TCAGTGTAAAGGCTATATAAGTATGGAGACAAGAGGGAGCCTTGTTTTAC
TCCTTGGCTCATTTTGAAGGATTTTGTATGGCAGTTGTTGTATATGACGG
ATGACTCACTTTTTAGGTAGAGTTGTATCAGTACTTTAAGAACAGGAGAA
GGAGTGCcttttttaaaacaaagtttATCAAATAGCTTCCACCAATTACA
ACAATCAAACGCCTTTTCAGCGTCAAGACTACAAATGAATATCGGTGAGT
TTTTTGAGTTGTAGTGGTTGATGGTGTCTTGAATTAGAATTTCCGCATGG
ATTGTGGAAGAGCCTGTGACAAAACCGAACTGGGATGGGTCGTGGTCTTT
GATTGACGGAAACATTTGTAGAATGACAAGTTCGATAATCTTCGTCATGA
CAGGGATGATACTGATGCCTCTATAATTATTGGGATCACATAGAGACTTT
TTGTATGATTTCACTAATGGAATTATCAAAGAGGTACATAAGCTTGATGG
TAATTCAGTTGATTGAAAGATATTGTTGATCAGCTTGGTAAGGTATTGAA
GTGAGATGGTATCTAGTGAATGTATGAAGTGTTCTGATTTTAGTTGAAAT
GGGTCTCGGGTCTTATCTTTAGAGAGTTTCTTAATTGCATTTTCAACATC
GCATTCTGAAACATAAAAGTTTGGAGCTGGGGAGTTTTCTAAGtctgaaa
gtaatttttgaagATGTGTCTTTGATTCCATATTATCGATATTGGGTGTC
CTGGGTTTGTTTAGGAGGTTACAAAAATGGTCATGAAATTCAGACGCAAT
TTCTGAGTTTGTTGTTTTTCCATTTATGGTGAAAAGTTTTTGAGTTGAGT
TACTGTTCAATCTGATTTTCTTCCAATAAGATTTGGGATGTGTGTGTTGC
AGTTTATCTACATTTATATAGTGGTCTACATTTGATTGGTTCTTGTAACG
TTTCACTAGTGTTCTGAAGTACTTTCTGGCAAATAGGTATCTTTGGTATG
AAACATCATCTAGGTCGCGTGGAAACTCTTTATCTCTCCAGATGTTGAAC
ATTTGGCTAAGTTTTGTTCGTGCTCTAGTAAGATCTTGGTTCCACCATTT
TTTAGCTGGGAAGCGAAAAAATCCTTTACTAAATTGGGAGAAACTTTCCG
ATGCACACCTCAGAAGTAGTGAGTTAAGGTTTTGTATTTCAGTTTCTAGG
TTGCCGGTGTTGGTTTCAAGAAGTTGGATTGAAGATGATACTTTGTCTTT
GTAGATGGACAGGAATCGATCATTTTTCCATAGATAATTTGGAATGTGGT
TATGATAATTTGGGTTTTGGTCGTAGTTCTGTTGATCGGTCAACGGTTCG
CTCAGTTTTGGAAAGGAGAATGATGCTGTAACTGGTAAGTGGTCACTTGT
GTTAGTGGGTGATGGTTCTAGTACTTCTGACTCAATGGTATGCTGGATAA
GATTGCTGGATATCACGATATGGTCAATATATGAACGGTTTGGTAACGAC
AAGTGCTGGTACGAATAATTTGGACCCCTACCTTGGGTCATGTCAATAGG
CGTGAAATTGTTTTCTTCAATGAATTCTTTTAGATGTTTAGAGAGTCTGT
TTGGTTGGGCGGTCCGGTTTGATTCAATAGTTGGGCAGGACTGGAAGTCG
CCTAATATTATAGTTTCACACGATTCTATAAACTGTTCAGTAATGCCGGA
GATAGCAGCTAATTGTTCTTTGTATGTGTCTATGCATTCAACGTTTGATG
ATAGCGATTGTAGGTATACGCCAGTGATTAGAATGGGATagttattttct
gattttgctTTGACTGTTATCGAATAGTCTTCTTTAATTATGGTGGTAAT
GGACTTGAATGATTGTTTTCTTAGTAAGAGGACTGAGCCCCCGTAAGGTC
TACCGGTATGGTTTTTTTTAGCTGGTTGAAAGATAACTTTGAAATCGTTT
TTGTAATGGTCAAGAAGATGTTCTTCTGCATTAGTGGTCCATAGTTCGTT
TATGTAAATGCAGTCATATTTTTGCGTTAGAGAGTCAACATATAAGCTGT
TTCCCTTGTATCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061747-exon-scaffold_36-1491911889:1117102..1119267 | TCONS_00061747-exon-scaffold_36-1491911889:1117102..1119267 | Clytia hemisphaerica | exon |
| TCONS_00061747-exon-scaffold_36-1510915933:1117102..1119267 | TCONS_00061747-exon-scaffold_36-1510915933:1117102..1119267 | Clytia hemisphaerica | exon |
| TCONS_00061747-exon-scaffold_36-1575043694:1117102..1119267 | TCONS_00061747-exon-scaffold_36-1575043694:1117102..1119267 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:1117102..1119267 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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