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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061726 ID=TCONS_00061726|Name=TCONS_00061726|organism=Clytia hemisphaerica|type=transcript|length=754bp
CTCGACGCACTCAACGCAGAAAGATTGCTCGTTGCTGAACATTGGTCAAC
CGAATCCGGCACCGCGGCATACGCCTGTGAAAATGCCCTTAAAAACCAAC
TGCATACGCATGATGTCCTTCTTATCCGCGCGACCCAATACAAGGGGACT
TGGCGTGAGAAGAGGGATAGGAGAACAATTCGTCAATACGTCTGGCAGCA
CCTCCAGGACATGTTCTCCAAGGCTGTCGATAGAGGATGTGTCACCTATT
CCACACAGCGGCAGGCGAAGGGATTCTGCTGTAACGGAAAACCAGACGTC
ACCGGAGAATTACAAGAGAACGTCCCTGCTGTCCACCCCACTTTCAACCT
ATCCCTGTTCCTCAAGACTGGCACGTCCGCGATTACGAATTGTTTCAACT
ACGTCCTCAGAAGAAGAGTTCATGGTAAGGAGCAATTCAAGCGTCTCGCC
GTCATGTCCGTCAACCGCCAGAATGTCATCCGTGAAAGAGTTGGCTTCCC
TGACCAAGTTAAGCTCGATTTCTTCAAGCCCATTGAGACGAAACGTAAAC
GAGGTTCTGACGAATGGttatggacatgttttttaattgtttcgttttta
gGGGTCTTGGGAAATCATCCTTCATTtctaatataatgaatgaactaAAT
TTATGCCCTGATGATGGTTGCGTGGAAAAgatgaactttaaaaatttaaa
agaattttttctaaagcttaaatctgCCATGACTTATGCTTCAACAAAGT
GCGG Run BLAST on NCBI protein sequence of TCONS_00061726-protein >TCONS_00061726-protein ID=TCONS_00061726-protein|Name=TCONS_00061726-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
LDALNAERLLVAEHWSTESGTAAYACENALKNQLHTHDVLLIRATQYKGT
WREKRDRRTIRQYVWQHLQDMFSKAVDRGCVTYSTQRQAKGFCCNGKPDV
TGELQENVPAVHPTFNLSLFLKTGTSAITNCFNYVLRRRVHGKEQFKRLA
VMSVNRQNVIRERVGFPDQVKLDFFKPIETKRKRGSDEWLWTCFLIVSFL
GVLGNHPSFLI Run BLAST on NCBI transcript from alignment at scaffold_36:540833..541586 Legend: exonthree_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061726 ID=TCONS_00061726|Name=TCONS_00061726|organism=Clytia hemisphaerica|type=transcript|length=754bp|location=Sequence derived from alignment at scaffold_36:540833..541586 (Clytia hemisphaerica)
CCGCACTTTGTTGAAGCATAAGTCATGGcagatttaagctttagaaaaaa
ttcttttaaatttttaaagttcatcTTTTCCACGCAACCATCATCAGGGC
ATAAATTtagttcattcattatattagaAATGAAGGATGATTTCCCAAGA
CCCctaaaaacgaaacaattaaaaaacatgtccataaCCATTCGTCAGAA
CCTCGTTTACGTTTCGTCTCAATGGGCTTGAAGAAATCGAGCTTAACTTG
GTCAGGGAAGCCAACTCTTTCACGGATGACATTCTGGCGGTTGACGGACA
TGACGGCGAGACGCTTGAATTGCTCCTTACCATGAACTCTTCTTCTGAGG
ACGTAGTTGAAACAATTCGTAATCGCGGACGTGCCAGTCTTGAGGAACAG
GGATAGGTTGAAAGTGGGGTGGACAGCAGGGACGTTCTCTTGTAATTCTC
CGGTGACGTCTGGTTTTCCGTTACAGCAGAATCCCTTCGCCTGCCGCTGT
GTGGAATAGGTGACACATCCTCTATCGACAGCCTTGGAGAACATGTCCTG
GAGGTGCTGCCAGACGTATTGACGAATTGTTCTCCTATCCCTCTTCTCAC
GCCAAGTCCCCTTGTATTGGGTCGCGCGGATAAGAAGGACATCATGCGTA
TGCAGTTGGTTTTTAAGGGCATTTTCACAGGCGTATGCCGCGGTGCCGGA
TTCGGTTGACCAATGTTCAGCAACGAGCAATCTTTCTGCGTTGAGTGCGT
CGAG Coding sequence (CDS) from alignment at scaffold_36:540833..541586 >TCONS_00061726 ID=TCONS_00061726|Name=TCONS_00061726|organism=Clytia hemisphaerica|type=CDS|length=636bp|location=Sequence derived from alignment at scaffold_36:540833..541586 (Clytia hemisphaerica)
ttatattagaAATGAAGGATGATTTCCCAAGACCCctaaaaacgaaacaa
ttaaaaaacatgtccataaCCATTCGTCAGAACCTCGTTTACGTTTCGTC
TCAATGGGCTTGAAGAAATCGAGCTTAACTTGGTCAGGGAAGCCAACTCT
TTCACGGATGACATTCTGGCGGTTGACGGACATGACGGCGAGACGCTTGA
ATTGCTCCTTACCATGAACTCTTCTTCTGAGGACGTAGTTGAAACAATTC
GTAATCGCGGACGTGCCAGTCTTGAGGAACAGGGATAGGTTGAAAGTGGG
GTGGACAGCAGGGACGTTCTCTTGTAATTCTCCGGTGACGTCTGGTTTTC
CGTTACAGCAGAATCCCTTCGCCTGCCGCTGTGTGGAATAGGTGACACAT
CCTCTATCGACAGCCTTGGAGAACATGTCCTGGAGGTGCTGCCAGACGTA
TTGACGAATTGTTCTCCTATCCCTCTTCTCACGCCAAGTCCCCTTGTATT
GGGTCGCGCGGATAAGAAGGACATCATGCGTATGCAGTTGGTTTTTAAGG
GCATTTTCACAGGCGTATGCCGCGGTGCCGGATTCGGTTGACCAATGTTC
AGCAACGAGCAATCTTTCTGCGTTGAGTGCGTCGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061726-exon-scaffold_36-1491911889:540833..541586 | TCONS_00061726-exon-scaffold_36-1491911889:540833..541586 | Clytia hemisphaerica | exon |
| TCONS_00061726-exon-scaffold_36-1510915933:540833..541586 | TCONS_00061726-exon-scaffold_36-1510915933:540833..541586 | Clytia hemisphaerica | exon |
| TCONS_00061726-exon-scaffold_36-1575043694:540833..541586 | TCONS_00061726-exon-scaffold_36-1575043694:540833..541586 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:540833..541586 . |
Blast
The following BLAST results are available for this feature:
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