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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061722 ID=TCONS_00061722|Name=TCONS_00061722|organism=Clytia hemisphaerica|type=transcript|length=2244bp
TAGAAAACTgtgattgaaaattttgataaatttctaaACCCATTATAAAC
AAACTGGAGACAtggttattttttttcttcctttaaagacAAAACCATAA
TGaaaccataaaaaaattatttaaagtacAGTAATATTTGAATCTTGTAG
ATATGATTAAAATTTATCAGTAATGAGATGGTCAAGAAAGTCTGTGCGTT
TGTTTTTCCTAGCAATAGTTCCTCGTCTTTTGGTTCCACATTGTAATTTC
ACTGGAAGTTTTCGTTCTTTCCGGGGAGGTGGTAATGTTTGTGATGGTCC
TTGAATAATGCGAGTCGGTAACTCAGAAAGAATTATaccattgtttttca
aaatacctTCAAACTCTCTCATTTTTTCTGTTGTTCTGTTTTGATATGTA
AACCAATGAACTCTCTCAATACCAATTTGCTTTAGTCTTTGAGCTAAAAT
CTTAGCAATATTTACTACAGCCATGACATCTGTTGTACTATGGAGTCGCT
TTGCAATATAATGTTCTGTTGTTGCAGCATAGCAAATAATGTCTCCATCA
ATATTTTCAACATAAGCCTTGGTATGGCGATGAGTGATGTCTAAATTCAG
CCTGTTGAAGAAATTTCTCTTCTCGTGCAATGTTGTAAAGCCACCTGGCT
TATTCCAGCCTAACAATTCAAGGCTTCTTGGATTGGAATTTTTGTGAATT
ATTTCCTGGGCCTGTTCGGGATCTTCTATGCCACATGACTTTTCTTTAAC
TGCAATTTCTTCCTTTAGTTTCTCATTTTGCAGAATTAAGTCTCTAGTAG
GAGTAATGTACTTATTTTTTGCAAGATTATTTCCAAAGTTGATTGAAAAA
CATCGTGAGTTTAATAGACCAACTTTTGGTGTGATTCTTAAAAAGCAACC
AATGTTCATTATGCaatactaaaaataaaaattcactAATTGCGTTAACA
CAATAATAACTGGCTGTCCATTTTCAGAAATCTAATAGTTGGCCCCTAAA
GAtttcatttaaattttgaataatCAAGGCTCCTGTCATTTTGACTCAAA
CTGACATTGAGATCAGACATTCATTATATGTCTGCAAAATAcaaactaga
actagaactagaaaaGATTTCATAGATTCtataatctcataacagatcat
atATCTGCTCATCCCACAGTTTGATCTAAAGGGATTTGGCGAAAACCTGT
GCTTTTTTTGCCTATAGATTAGATTACAAGTGACCAGTGCTAATGTTATC
TTATGTTTTTGATCGGACATTGTTTTGATGTGCAATGTAGCTGATGTGAT
GTGTGTTGTAGCCAATCAACACACACAACAGCTCatttacagtatatggc
ccctaAAACCGAAACAGCCCCACAAATGGAAATTTTGCTTTAGTCAGCCA
TATTGGTACCAGCTCAgtaattcaaagtttttctttgaatacGAATGGCA
CAAACAAACCAGACGTcggcgctcgataggatcgatcatcggaacggctc
aatgacggatcgatatgtgattgatggattacttaacgatccggatagga
gatcgattgaagatcgatactcaagatttttttaagctcatgattagtta
tcgattatttatcgatcttttatcgatcttatcgaccctatcgactcata
ctcaaTTTACAATTGATAACAAATAGATGACGAATCGacatactcgattg
aaatactagctcgataatggatcaacgaaggatcgatactcaagactttt
taatggctgaatcttcaatcgatctcctatccggatcgttaagtaatcca
tcgatcacatattgaGCTGTTATcaagccgttccgatgatcgatcctatc
gatcACGGACGTCTGTAGAACAAACGATCAATGGAAATTTAGGTGGCAAA
AAATGTAAGCACTTTTGCCACTTTTAGACACATTTTAAAGAAACAAATAG
GAATTAACCTGATGGCACTTGTGGTGGCACAAATGTGAAAAATATCAACG
AAACAATTTCCCACCTTTCTGAGGGTGGAGGGTTGtaaataccgtgagat
tgggaaacttgcatcagtggaaaGGACaggtggaggctaacatgcatagc
ccacAAATGAATGACCaggcaaatttttgtcttcaatcttaaatagatga
acaagTATATTTTAACGACCCTGCTGGTGCACCCAACAGTCGGGTGCTGT
CGGGTGTTTTGTCGGgtgctgaaatttctaaatttgcaaaaaca Run BLAST on NCBI protein sequence of TCONS_00061722-protein >TCONS_00061722-protein ID=TCONS_00061722-protein|Name=TCONS_00061722-protein|organism=Clytia hemisphaerica|type=polypeptide|length=250bp
MNIGCFLRITPKVGLLNSRCFSINFGNNLAKNKYITPTRDLILQNEKLKE
EIAVKEKSCGIEDPEQAQEIIHKNSNPRSLELLGWNKPGGFTTLHEKRNF
FNRLNLDITHRHTKAYVENIDGDIICYAATTEHYIAKRLHSTTDVMAVVN
IAKILAQRLKQIGIERVHWFTYQNRTTEKMREFEGILKNNGIILSELPTR
IIQGPSQTLPPPRKERKLPVKLQCGTKRRGTIARKNKRTDFLDHLITDKF Run BLAST on NCBI transcript from alignment at scaffold_36:519459..521702 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061722 ID=TCONS_00061722|Name=TCONS_00061722|organism=Clytia hemisphaerica|type=transcript|length=2244bp|location=Sequence derived from alignment at scaffold_36:519459..521702 (Clytia hemisphaerica)
tgtttttgcaaatttagaaatttcagcacCCGACAAAACACCCGACAGCA
CCCGACTGTTGGGTGCACCAGCAGGGTCGTTAAAATATActtgttcatct
atttaagattgaagacaaaaatttgcctGGTCATTCATTTgtgggctatg
catgttagcctccacctGTCCtttccactgatgcaagtttcccaatctca
cggtatttaCAACCCTCCACCCTCAGAAAGGTGGGAAATTGTTTCGTTGA
TATTTTTCACATTTGTGCCACCACAAGTGCCATCAGGTTAATTCCTATTT
GTTTCTTTAAAATGTGTCTAAAAGTGGCAAAAGTGCTTACATTTTTTGCC
ACCTAAATTTCCATTGATCGTTTGTTCTACAGACGTCCGTgatcgatagg
atcgatcatcggaacggcttgATAACAGCtcaatatgtgatcgatggatt
acttaacgatccggataggagatcgattgaagattcagccattaaaaagt
cttgagtatcgatccttcgttgatccattatcgagctagtatttcaatcg
agtatgtCGATTCGTCATCTATTTGTTATCAATTGTAAAttgagtatgag
tcgatagggtcgataagatcgataaaagatcgataaataatcgataacta
atcatgagcttaaaaaaatcttgagtatcgatcttcaatcgatctcctat
ccggatcgttaagtaatccatcaatcacatatcgatccgtcattgagccg
ttccgatgatcgatcctatcgagcgccgACGTCTGGTTTGTTTGTGCCAT
TCgtattcaaagaaaaactttgaattacTGAGCTGGTACCAATATGGCTG
ACTAAAGCAAAATTTCCATTTGTGGGGCTGTTTCGGTTTtaggggccata
tactgtaaatGAGCTGTTGTGTGTGTTGATTGGCTACAACACACATCACA
TCAGCTACATTGCACATCAAAACAATGTCCGATCAAAAACATAAGATAAC
ATTAGCACTGGTCACTTGTAATCTAATCTATAGGCAAAAAAAGCACAGGT
TTTCGCCAAATCCCTTTAGATCAAACTGTGGGATGAGCAGATatatgatc
tgttatgagattataGAATCTATGAAATCttttctagttctagttctagt
ttgTATTTTGCAGACATATAATGAATGTCTGATCTCAATGTCAGTTTGAG
TCAAAATGACAGGAGCCTTGattattcaaaatttaaatgaaaTCTTTAGG
GGCCAACTATTAGATTTCTGAAAATGGACAGCCAGTTATTATTGTGTTAA
CGCAATTagtgaatttttatttttagtattGCATAATGAACATTGGTTGC
TTTTTAAGAATCACACCAAAAGTTGGTCTATTAAACTCACGATGTTTTTC
AATCAACTTTGGAAATAATCTTGCAAAAAATAAGTACATTACTCCTACTA
GAGACTTAATTCTGCAAAATGAGAAACTAAAGGAAGAAATTGCAGTTAAA
GAAAAGTCATGTGGCATAGAAGATCCCGAACAGGCCCAGGAAATAATTCA
CAAAAATTCCAATCCAAGAAGCCTTGAATTGTTAGGCTGGAATAAGCCAG
GTGGCTTTACAACATTGCACGAGAAGAGAAATTTCTTCAACAGGCTGAAT
TTAGACATCACTCATCGCCATACCAAGGCTTATGTTGAAAATATTGATGG
AGACATTATTTGCTATGCTGCAACAACAGAACATTATATTGCAAAGCGAC
TCCATAGTACAACAGATGTCATGGCTGTAGTAAATATTGCTAAGATTTTA
GCTCAAAGACTAAAGCAAATTGGTATTGAGAGAGTTCATTGGTTTACATA
TCAAAACAGAACAACAGAAAAAATGAGAGAGTTTGAaggtattttgaaaa
acaatggtATAATTCTTTCTGAGTTACCGACTCGCATTATTCAAGGACCA
TCACAAACATTACCACCTCCCCGGAAAGAACGAAAACTTCCAGTGAAATT
ACAATGTGGAACCAAAAGACGAGGAACTATTGCTAGGAAAAACAAACGCA
CAGACTTTCTTGACCATCTCATTACTGATAAATTTTAATCATATCTACAA
GATTCAAATATTACTgtactttaaataatttttttatggtttCATTATGG
TTTTgtctttaaaggaagaaaaaaaataaccaTGTCTCCAGTTTGTTTAT
AATGGGTttagaaatttatcaaaattttcaatcacAGTTTTCTA Coding sequence (CDS) from alignment at scaffold_36:519459..521702 >TCONS_00061722 ID=TCONS_00061722|Name=TCONS_00061722|organism=Clytia hemisphaerica|type=CDS|length=753bp|location=Sequence derived from alignment at scaffold_36:519459..521702 (Clytia hemisphaerica)
ATGAACATTGGTTGCTTTTTAAGAATCACACCAAAAGTTGGTCTATTAAA
CTCACGATGTTTTTCAATCAACTTTGGAAATAATCTTGCAAAAAATAAGT
ACATTACTCCTACTAGAGACTTAATTCTGCAAAATGAGAAACTAAAGGAA
GAAATTGCAGTTAAAGAAAAGTCATGTGGCATAGAAGATCCCGAACAGGC
CCAGGAAATAATTCACAAAAATTCCAATCCAAGAAGCCTTGAATTGTTAG
GCTGGAATAAGCCAGGTGGCTTTACAACATTGCACGAGAAGAGAAATTTC
TTCAACAGGCTGAATTTAGACATCACTCATCGCCATACCAAGGCTTATGT
TGAAAATATTGATGGAGACATTATTTGCTATGCTGCAACAACAGAACATT
ATATTGCAAAGCGACTCCATAGTACAACAGATGTCATGGCTGTAGTAAAT
ATTGCTAAGATTTTAGCTCAAAGACTAAAGCAAATTGGTATTGAGAGAGT
TCATTGGTTTACATATCAAAACAGAACAACAGAAAAAATGAGAGAGTTTG
AaggtattttgaaaaacaatggtATAATTCTTTCTGAGTTACCGACTCGC
ATTATTCAAGGACCATCACAAACATTACCACCTCCCCGGAAAGAACGAAA
ACTTCCAGTGAAATTACAATGTGGAACCAAAAGACGAGGAACTATTGCTA
GGAAAAACAAACGCACAGACTTTCTTGACCATCTCATTACTGATAAATTT
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061722-exon-scaffold_36-1491911889:519459..521702 | TCONS_00061722-exon-scaffold_36-1491911889:519459..521702 | Clytia hemisphaerica | exon |
| TCONS_00061722-exon-scaffold_36-1510915933:519459..521702 | TCONS_00061722-exon-scaffold_36-1510915933:519459..521702 | Clytia hemisphaerica | exon |
| TCONS_00061722-exon-scaffold_36-1575043694:519459..521702 | TCONS_00061722-exon-scaffold_36-1575043694:519459..521702 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:519459..521702 . |
Blast
The following BLAST results are available for this feature:
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