TCONS_00061705 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061705
Unique NameTCONS_00061705
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length783

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061705 ID=TCONS_00061705|Name=TCONS_00061705|organism=Clytia hemisphaerica|type=transcript|length=783bp
TCGAAGTTAAATTTTGGTGATGGTTTGTTGGGCGATCAAAAGCTCAATGA
TTATAAACAATGTCATAGTATGCTGAGGGTCTTAATATAAATCCCTATCC
TCATGGTAATTTCCCGTATAGATAGAACTTTAGTTAATCCTTAAGCTCAG
TCTACATTTGAAGAGATCTCAAGGAAGTGCCGCGTGCAAAACCTACTGGA
ATTTAGCATTTGCAATTTTGTCACCGAAGTGGTAGCAGGACTCTCCTACC
TGGATCCATATCTATTATGTTGTGAAGATTATTTTACTGTGTTAGGCTTA
ATCTGAGAAATAAAATGGGGGGAGTTGTTGTTGATTTTATTTGAGTGAAC
GTGAGACAGTgagaagtagtaaaaattgcTACAGATAGGGAAGAAAAAGG
TCGTAACTCGCGCATGCGGCAGTGCCGGGCAGTAACAAAAACaggatttt
tgaagaaaatcttcaaacttttacATAACTCCAGGATGGAAACGTTTTTT
ATCATAAGTATTTTTTTCCAACTTCAATAGAATTTATCcagctttctttt
gcaaaaaaaattatcaataaaCAGATAGAAGATGTCTTTTGATTTTGTCT
GtttgttctttcaaaatttgaaaatgagcaCTTCATTCAAAGGTGCACTT
TTTCAACCTTCTTATTGTTCATGGCACTGGTCCTTGATTTTTAAAGTAGA
CACTCCAACACTGCCTTGGCGcttgcttttgttttgatgacttATAAAAA
TGTTCAGGATCATCAGACATAAAAGTTTCATTT
Run BLAST on NCBI

transcript from alignment at scaffold_36:25579..26361

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061705 ID=TCONS_00061705|Name=TCONS_00061705|organism=Clytia hemisphaerica|type=transcript|length=783bp|location=Sequence derived from alignment at scaffold_36:25579..26361 (Clytia hemisphaerica)
AAATGAAACTTTTATGTCTGATGATCCTGAACATTTTTATaagtcatcaa
aacaaaagcaagCGCCAAGGCAGTGTTGGAGTGTCTACTTTAAAAATCAA
GGACCAGTGCCATGAACAATAAGAAGGTTGAAAAAGTGCACCTTTGAATG
AAGtgctcattttcaaattttgaaagaacaaaCAGACAAAATCAAAAGAC
ATCTTCTATCTGtttattgataattttttttgcaaaagaaagctgGATAA
ATTCTATTGAAGTTGGAAAAAAATACTTATGATAAAAAACGTTTCCATCC
TGGAGTTATgtaaaagtttgaagattttcttcaaaaatcctGTTTTTGTT
ACTGCCCGGCACTGCCGCATGCGCGAGTTACGACCTTTTTCTTCCCTATC
TGTAgcaatttttactacttctcACTGTCTCACGTTCACTCAAATAAAAT
CAACAACAACTCCCCCCATTTTATTTCTCAGATTAAGCCTAACACAGTAA
AATAATCTTCACAACATAATAGATATGGATCCAGGTAGGAGAGTCCTGCT
ACCACTTCGGTGACAAAATTGCAAATGCTAAATTCCAGTAGGTTTTGCAC
GCGGCACTTCCTTGAGATCTCTTCAAATGTAGACTGAGCTTAAGGATTAA
CTAAAGTTCTATCTATACGGGAAATTACCATGAGGATAGGGATTTATATT
AAGACCCTCAGCATACTATGACATTGTTTATAATCATTGAGCTTTTGATC
GCCCAACAAACCATCACCAAAATTTAACTTCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038695XLOC_038695Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061705-exon-scaffold_36-1491911889:25579..26361TCONS_00061705-exon-scaffold_36-1491911889:25579..26361Clytia hemisphaericaexon
TCONS_00061705-exon-scaffold_36-1510915933:25579..26361TCONS_00061705-exon-scaffold_36-1510915933:25579..26361Clytia hemisphaericaexon
TCONS_00061705-exon-scaffold_36-1575043694:25579..26361TCONS_00061705-exon-scaffold_36-1575043694:25579..26361Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:25579..26361 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0618079	0.180817	0.0699821	0.2054	0.333406	0.131731	0	0.148786	0	0	0	0.0411637	0	0	0.0350966	0	0	0	0	0.0687536	0.0597594	0.0874456	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061705 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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