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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061680 ID=TCONS_00061680|Name=TCONS_00061680|organism=Clytia hemisphaerica|type=transcript|length=2134bpRun BLAST on NCBI transcript from alignment at scaffold_36:1025604..1041985- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061680 ID=TCONS_00061680|Name=TCONS_00061680|organism=Clytia hemisphaerica|type=transcript|length=16382bp|location=Sequence derived from alignment at scaffold_36:1025604..1041985- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00061680 vs. Swiss-Prot (Human)
Match: S23A1 (Solute carrier family 23 member 1 OS=Homo sapiens GN=SLC23A1 PE=1 SV=3) HSP 1 Score: 487.649 bits (1254), Expect = 3.105e-163 Identity = 262/562 (46.62%), Postives = 367/562 (65.30%), Query Frame = 1
Query: 178 KEEGADEPQNTEFDVIYKVNDNPPWYLAIVLGFQQYMTMFGSTIAVPFILAGPLCIADNNLAKSELISTIFLVSGIATLIQSCLGTRLPIVQGATFSFIGPTIAILNLPEYKCPTAV----NGTVP---DYDWKIGMREIQGAIAVSSLFQVFVGCTGIIGFVMRFIGPLTVAPTIXXXXXXXXXXXXXXXXEQWGIAALTVFCIALFSQVL------------GK-----KFAVFRLFPVILAILISWALSGIIT-----AAGGYKEGSEARTDHNLEVLNQAKWIRVPYPGQWGTPTVHVAGVFGMLAGVFASMIESIGDYYACARLSGAPPPPKHAVNRGIFLEGISCVLAGLFGSGNGTTSYSENIAAIGVTKVASRRVIQIGAIFMIILSILGKFGAVFTLIPKPVIGGMFWCLFGLIVAVGLSSLQFVNLNDSRNLFVLGFSFFNGMVVPSWISANPQAIDTGVTELDQIIGVLLGTNMAVGGITACLLDNILPGSKKDRGIEAWRDNEASAEENSA---TYDLPYIQKYLDRTSWIRYVPFLPYNGNRSGTEQNN 1767
++ P +FD++YK+ D PPWYL I+LGFQ Y+T F TIAVPF+LA LC+ + S+LI TIF GI TLIQ+ +G RLP+ Q + F+F+ P AIL L +KCP N ++P + W +RE+QGAI VSS+ +V +G G+ G ++ +IGPLTV PT++L+GL++F AAG A WGI+A ++ I LFSQ L GK + +F++FP++LAI+ W L ++T G +ARTD +++ A WIR+PYP QWG PTV A V GM + A +IESIGDYYACARL+GAPPPP HA+NRGIF EGI C++AGL G+GNG+TS S NI +G+TKV SRRV+Q GA M++L +GKF A+F+ +P P++GGMF LFG+I AVGLS+LQFV++N SRNLFVLGFS F G+ +P+++ +NP AI+TG+ E+DQI+ VLL T M VGG A +LDN +PGS ++RG+ W+ + + S+ +YD P + R ++++Y+P P S + ++
Sbjct: 17 RDPSTPLPTEPKFDMLYKIEDVPPWYLCILLGFQHYLTCFSGTIAVPFLLAEALCVGHDQHMVSQLIGTIFTCVGITTLIQTTVGIRLPLFQASAFAFLVPAKAILALERWKCPPEEEIYGNWSLPLNTSHIWHPRIREVQGAIMVSSVVEVVIGLLGLPGALLNYIGPLTVTPTVSLIGLSVFQAAGDRAGSHWGISACSILLIILFSQYLRNLTFLLPVYRWGKGLTLLRIQIFKMFPIMLAIMTVWLLCYVLTLTDVLPTDPKAYGFQARTDARGDIMAIAPWIRIPYPCQWGLPTVTAAAVLGMFSATLAGIIESIGDYYACARLAGAPPPPVHAINRGIFTEGICCIIAGLLGTGNGSTSSSPNIGVLGITKVGSRRVVQYGAAIMLVLGTIGKFTALFSSLPDPILGGMFCTLFGMITAVGLSNLQFVDMNSSRNLFVLGFSMFFGLTLPNYLESNPGAINTGILEVDQILIVLLTTEMFVGGCLAFILDNTVPGSPEERGLIQWKAGAHANSDMSSSLKSYDFPIGMGIVKRITFLKYIPICPVFKGFSSSSKDQ 578 The following BLAST results are available for this feature:
BLAST of TCONS_00061680 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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