TCONS_00061677 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061677
Unique NameTCONS_00061677
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length868

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061677 ID=TCONS_00061677|Name=TCONS_00061677|organism=Clytia hemisphaerica|type=transcript|length=868bp
GTTTTAGGCAATCGAGACCTGTGTGCGATCAAAATGATCGAGGCACAGTA
AAGAAACCTTTTAGTCTTGGTGCTCATAGGCAAAatGGGCAAGTTCATGA
AATCTGGTAAAGTTGTCCTTGTCCTTGGTGGCAAGTATGCTGGCAGAAAG
GCCATTATCGTCAAAAACTACGATGATGGAACACAAGACAGACAATACGG
CCATGCCCTTGTTGCTGGCATTGACAGATACCCATTGAAAGTCACCAAAA
GCATGGGCAAGAAACGTGTTTCCAAGAGGTCCAAGATCAAGACTTTTGTT
AAAATTGTTAACTACAATCACTTGATGCCCACAAGATACTCAGTCGATGT
TCCATTAAACAAATCTGTTGTAAATAAAGATGTGTTAAAAGATTCCAGCA
AAAGGAAGCGAGCCAGAACCGAAGTAAAAGCTAAACTGGAAGACAGATAC
AAGAGCGGCAAAAACAAATGGTTCTTCCAAAAACTCAGATTCTAATTTGG
ACagtggaaataaaaaaattgtaaaacacGAACTCTTTTCTCTCGTTTCT
TTTCCTAGCCTGCCTGAGTAGAAAGTGGACGTCTTACTTGCAATACAGCA
TGCACTTTTCTGCATGGGGCTTCAATGGCCATCCCATTTCCATTTAATTT
CCATACACGGGGAGAGAGGCGAAcccaatacacgggtttcgaattaaatc
tggcgcgagagaaaaaatcaagtaaataaaaggagcgataaggggaaatg
ccttataaaaggttggtagatttcctttcttctcttttgaaagccaggtg
ttcattcaaaagatgtttttctattttaaattcaataaaagaaatatgat
taaacgattgacttttta
Run BLAST on NCBI

protein sequence of TCONS_00061677-protein

>TCONS_00061677-protein ID=TCONS_00061677-protein|Name=TCONS_00061677-protein|organism=Clytia hemisphaerica|type=polypeptide|length=136bp
MGKFMKSGKVVLVLGGKYAGRKAIIVKNYDDGTQDRQYGHALVAGIDRYP
LKVTKSMGKKRVSKRSKIKTFVKIVNYNHLMPTRYSVDVPLNKSVVNKDV
LKDSSKRKRARTEVKAKLEDRYKSGKNKWFFQKLRF
Run BLAST on NCBI

transcript from alignment at scaffold_36:1004216..1013369-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061677 ID=TCONS_00061677|Name=TCONS_00061677|organism=Clytia hemisphaerica|type=transcript|length=9154bp|location=Sequence derived from alignment at scaffold_36:1004216..1013369- (Clytia hemisphaerica)
GTTTTAGGCAATCGAGACCTGTGTGCGATCAAAATGATCGAGGCACAGTA
AAGAAACCTTTTAGTCTTGGTGCTCATAGGCAAAGTATGGCGATTTTTAT
TTATCAACATTCCAACTTGAATCCCCCATCATCACCAAAATACGTCTAGT
TATCAATGTATCGGTTTCGATGGTCGAAATTTTAGAGATTTTTCTCCTTC
ATACAGTGAATAGTTCTACGAGAAAATGTATTGCAGCGGCCAGTATGGAT
GTAGAGATCCAAAGTTCTTTATACAAAATACAATCGAATTGTTGGTCATC
ATTAAGTATGAAAATTTGAGAGGAATTGGTTGATTTGTCGCTTATTAGAA
TGTATTTTATGCATGCATTTTACCTAGAATGTTCTCATGGGTTATATTTT
GGTTGAGTAATGTCTACATAAGCTAAGAGTGTTGTATTATCTCAAGCAAG
ACGAGAGTTGTATATTCAAAAATGGAAAAATATTATAGATCAGTGTTTTT
TGAATGTCAAAACTAGGAGGTTAAAAAGGACAAGATTGTTTTAGATGTTA
ATAAGCTCCTTGGTTTGTGTATGAGATCTTATGTTTGCCCTATGATGTCC
TGACTAGCAATTTTTTTAATTGGAGAAGTAGTTAGTTTATCTTAAAAAAT
AAAAACACATTTTGGTAGCTGGATCACCACCTTGCTTTGGACCATGCTAA
CGTAATTTGGCACACTTCACTCAAAAGAATTTAATTTTTTTTCATTATTT
TGGTTTTGTATCAAAATCTTCTTGACTGGCACAAACCAGTTGAAGCAATT
TAAATAAATGACTCTTTGTTTACACAGTCTTTACATTCCGGATTATCAAT
GTTTGGGCCAAAAGAATACTTTCTTATTTTGGCCCAAACATGACCCAAGA
ATGTTTGGGATACATATGCTTGGAAAAAACTCTTGTCTATTGCTCGTTCC
GACATCGACTTTTTATTTCTGCCTATCTTCTCTGAGGCTCTTTTCTGACC
CCCTGGTGACTTTTCTAACTCATTTACTATGTTTTCTGACTATTTGAAAG
TGTTTTAACTGACCTTGAAATATCGACCCGACCGGGATTCGAACCCACTA
AATGAGAGAGTTTCTGATTAGAAACCCAGCGCGCTATCCCTTGAGCCACA
CTCGCACATCGAATCACAAAATTTGGAAATACTTATAGAATGACAAAAAA
GACGGGGGTGATGTTATAATAATATGGGCAAAATTGCCCCTTTTTTAACC
TGACTGAAATTCGAGCCGTTACTAGCAACCCTGCGGGGCCCAAGGCGCCG
AGTATGCACCCGGCACAGCGACAAGCCGTTACTAGCAACCCTGACCCTAC
CTAACTGTTAGTTAATCAANGGGCCCAAGGCGCCGAGTATGCACCCGGCA
CAGTGACAAGCAGTCACTAGCAACCCTGACCTAAACAATCCCAAACAGCA
AAACCCCCGGAAAATTTAAAATGTCAGAACGACCAATAGACAAGAGATTT
TTCCCATATGCTTTGGCCATACAGTTGGTCATTGATACATGGAAGTTAAC
ATTGTACCTTTCGGAAACGACATGATATAAGGTGGCAGATTTCAGACTTG
CATATAGCTTTCAGTAAAAATTTAGTTTAGTTTTTTTAACAGAAAGCTAC
ACTTTTTTACAATTTGGCATTTAAGCCATTGACAAAGTTGGCTTGGATTA
GTGGGTGGTATTCTTTGCTAATGTTGAACCTGGAAAATCCATTGTGATGT
CCAGAGCCAGTGTTGCTCATTTATTTCTACTTTTCTAGCCTTCTCTTAAA
CAGTTGGGTGTTTAATATAAAAACAGCAATTATTGCTCTTTTTGGCAATT
ATTGCTGAAAACAGCAATTTTTTCAACGATGAAATGCTAAATCAGCAGAA
AAGTGAAAAAAGTAAATAAATGTAAATTGCCGTTTTTGGCAACTATTGCA
GTTTTTTGGGGAAAAAAGTTGATTTTATTATTGAACACGTGGTATTTGAC
ACCCTCACAATAACACCCTCACTGGCTGCATTTCAGCATCGATGCAGGAT
CTTTTTACATATTACTTTAGAACTTTTCATGTTATTAAGCCACAAAAAAT
TGAAAAAATCACCTTAAAAATCCGAAACACCTTTGACATCTTTGCCCTTA
TAAGGATAACATATTTTGCTGACTCGGCATTTCATCGTTGAAAAAATTGC
AGTTTTCGGCAATGATTGTCAAAAAGAGCAATAATTACCGTATTTATCTT
AAACACCCAACCGTTAAATTTTTATTTCAATATATTGGCTTTTTGCTAGA
GCTCTTTCATTACAACTTGTTCACTAGTTTAGCTTATTATGTTTTTTTTT
TTTAAGTAGCTTTAATTTATCTGACTCAGCATGAAGACACTGCCTAAATT
AAGCATATTTTATTACCGTAGAAAACCTTTAAGTATGCCAAAGTTTTCAT
CGATGATTGATATTTTTTAGATGGGCAAGTTCATGAAATCTGGTAAAGTT
GTCCTTGTCCTTGGTGGCAAGTATGCTGGCAGAAAGGCCATTATCGTCAA
AAACTACGATGATGGAACACAAGACAGACAATACGGCCATGCCCTTGTTG
CTGGCATTGACAGATACCCATTGAAAGTCACCAAAAGCATGGGCAAGAAA
CGTGTTTCCAAGAGGTCCAAGATCAAGACTTTTGTTAAAATTGTTAACTA
CAATCACTTGATGCCCACAAGGTAAGATATAAGAAAAATTCATTGTCTGT
GAACCCCAAGAGATTTCTAAGTACTTGAAAGTTTGTCCAGTCATAAACTT
TTGTTCTTTTTTTTTTCTCTAACATGATACAGAGCTTAAGTAAAATAAAA
GGTTGCACGCTAGGGAATAGTATATTTCTTAAAAACATAACTGTAACACC
GTTTCGGTGTTGAACTACCTCTACCAGGGGTATAGCCAATTGCGTACGCC
TGCATACAGGGGAAGGGGTACTCAATTTTTGACATTTTAGTGCGTACATA
CTATGTGGATGGCCCCGATTATCGTAGTTTATCCTCTTGTGTTTGTATTT
TGAACAGGTTTAATCTTTAACTTCCTTTTAAAATATGAAGTATGTAAACA
CTCATTTACTACTTTGAATTTTGAAGCCATATAGGAGCAGTTTCAGCACC
ATAAAAAAGCCTTAAAAATTGATTCTGAACAACTTTTTATCTGTGTCAAA
GTTAGCCATCTGATCTAAAAGTGATCAAAAGCAAAGTTTGATAAAATTTT
GAAATAATTTGAATATAAATTTGCTGTTTTATACCATCAGACAAAATAGG
AAAAGGCTATAGAACAAAAGTGATCCTTGTGTTGATATACACCCTGATCA
AATACCTGTTCTCTTTATCTGTTATTAACAGGTTCAGATGGGTTTTTTCA
TTTTCTTATCAGATCTTCCTTTTAATCTCTTAGATACTCAGTCGATGTTC
CATTAAACAAATCTGTTGTAAATAAAGATGTGTTAAAAGATTCCAGCAAA
AGGAAGCGAGCCAGAACCGAAGTAAAAGCTAAACTGGAAGACAGGTATGT
ACATGACATTCAGTGCTGCAAATAGGGCAATTTCAGTTGGCCGGTAATTT
TTTGAGTGTAACGAGCAGGGGGTCTGGCGGAACCATCTTTGTAGTCTGTT
ATTACAGATTGACTTATTGGATTATTAGATTGGCTAAACACCTATTTTAA
TTTAAAAACTGTTCCTCTGTTAATTAGAAGCGCTATTTAAAAAGTATTAA
TAGGGATTTATGTTAGGAACAGATCATGCTGATTACCCTCTTAAAATGTG
CCATAGGTTATAAAAACTTGAAAAAACATCAATTTTTAGGGTAGGAACCA
TTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCTCCACAGAAGAGTATGTTGAAAACTTGAGCTCTTACCT
CAGTATTGCACGTTGTTGCTCTTAGACAACTATTGGAGATCTTAGAAATG
TTATACATGGCATTGTGGGTAAGAGGAATGATAGTAAATCACTAACACTG
GAACTCACTCTCCTTTACAAGGTCAAGGGGATGAAACAATACAGTCCAAA
GACTTGTGATGTTGGGGAGCATGTTATTGCCTTTTGGCATGAGGGTATTG
GTAATGAGACAAAATGACATTTAGGAGTAGTAGAAAAGGTTCAACCAGTA
ACANTCACACAGAGTTGAGTAAATCAGACTTTTTTTCATAGGATAGCAGT
ATTTTTTCAAGAGCTCAGTAAGTACATGTATGAAGAAAATGGTACTCAAT
AAAAACATGACATTCTTGAGCAAACAAATCCAAATCACTTTAAAAAGTNN
CACGAACTGATAAAAGCAGACACAACTGGACATTCCTTGAAAAAGTTGAA
ATAATTATGACATCTGTCGACCAAGTAATTGCAACTAAAATCAAAGTCCA
GTATCTTGGAACTGTGAGGATAAGATGTTGTCAAAAATATTTCAATTTCA
ATTTATTAGGTTTAAAATCTAATAGCAAAGGAAGTACCCTTCAAACTCTG
TAAAATATCTTTTGGATAGTATAAGGTTTGAGAGGTTGATGGACTTCGAC
TGTTCTCGATTAGAGCAACAAAATTTCTTATTTGTCAAAAAGCTCACTTT
ATCCTTGGTTTTATAGTTTTTAAATTTTTAAAATGATCCTGTAGATTCAA
AATGTATGATATCAGTACTGTAGAAAATAAGCACTTATGTTTATTTCATG
TAGGTCTTCCAAAAAATATAATAAAAGTATGAATTAATTACGAAAGTATG
AATTTTTTAAGACATTACACAATTACACTAAAAAAGCCTCTTTCAAGAGC
AATGTAATGTACTCTACAACCTTATCACTTCATTTTTGATGCATAGTCAT
GATGTTTTTCTTAATCTACATTANNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCTTTTTCTGAAATTATACATGTTTTGGCACATTTTGAAGGG
GTAATCAGTTTATGATTCCAAAAATCCATTTTTAACATAGATCCCTAGTA
TTAATCTAAGCCTCTAATCTTCAAATTTTAACCGGACAACATGAAAAATT
GAGCTTCAGAATGACTGGTAGAAACTACGAAATAACCCGTAATTACCGGT
CACCGGCCGTTATTTGCAGCACTGACATTTTAAAGTCATTTTGAAATTAG
CGGCCAGTAAAATTACAAACGCGAACATCTTTTGATATAGTTCAATTATA
TTGTAATTTTTGCTTATGATAGACACAATATTACGGTGAGGTCTGTGAGC
AGATAAAAACATGAATACTTCAGGGTGATAAAAACATTTGGCACAGGTGG
CTAAGTCTAAAACTTAATTTTAAATAGGAACACCAATTTTTGTTACCTGG
CCACCTGCAAAATGACATATCATATGGCTGGGCAAAAAGGTTTTTTTTAT
TTTTCAAAATATAAATGGTTCTATTCATATAATTAAAATTCAATGCTCTT
TTTGATTTATGCTGAAATTGAATTAAAAATAAAAATCTGACGAGATAATA
AAACTTAAATTTTGAGGTTAACAAGGCAAATCAACAAGCTCTCTCTACAG
GAACACAGTGTACAACTGATGTACAACTTTTATGGACGTTTAAGCCTTCG
TATGTTGTTTTGACCCAAGCATTAGAAGGAACGTCGGATTCATGTAGAAA
ACATCAAATTTGCCCAACTTGTTCAAAAAATATACAGTATGTGGCCCCTA
AATTGTCTATCCAAATTGAAATTTTTCTGGTGAATTCAGAAAATAAATAG
GGAAAGTTAAAAATTTTTCTTGTGAATTAAGCTTCAACGTGTCTAGTTTC
TTTCCCAAAAAATAATTTTCTTAGAATAAAGGTTTTTGAATGATTTTATT
TTTTCAGTCAAAGTTGAGTCACATTTTCCTAATGGCCCCCAAAACGGAGG
TCTAGTTTTTTCGAAATATCTTAATCAAAAAGCATATCACCGACATCAAA
TAACTATCAATAGGTATGAAGGCAATGCTTTACGATTTAAAAAGTCGAAA
TTTACTTTTCTCTTTATCTTCATACAAGTGATTTTCAAAACGGAGGTTAG
TGGCCCCCAAAACGTCGATTCAATTAAATTGAAATTGTTCAAAAACCCAT
CACTTAATCATGTCTCGAATTAATGACACGATAAAATTATTATTTTTTTT
TTTTTTGTAATTTTGCAAAAAGAATTCATACCAAAACATAAATGTTTCAG
TCCAGGCTGAGTGCAAAATCCCGCGCAAAATACTAGTAGTCTCTTAATGT
TAATTTTGTTGTAAAATATTTCTTAAGTTTTTTGAAAAACTTTGAATTAT
TGAGTTGGTATGTTGGAATATGTTTATACTTTCCAGAGTTACCCAGTTTT
TAAGGGTTGATTTCCGATATTGTTTGACTTTTGGCGGTTTTAGTCCAAAG
AAAGGAAATTTCGAAACTAATTTTTGAAAAAACAAGGAAGAAGAGATGAA
GCCATATGAAAAAAGAAATTTTGCTATTTCTCTTTTTTTTCGGATTCGAG
AGAAATGGGTTAGGATTGAATCTGAAGCTTTTCCAGATTTTAAAGTACCA
ACATGGCTCATTAAGGGAAAACCTCTGTTTTGGGGGCCATGTACTGTAAG
CATTGTTTTGTTTAAAACAATTATTATAAATAAAAAAATAATTTTTTGTC
CAACCACCTGATTTACTAAGTTTTAGACACTATAAGGGTCATCTGTACCA
AATTTTTTTATCACCATTTTTGTTCTAACAGACTAAAGTCTGTCTCAAAA
TAATTTGCAGTTGAGACAAAAAATGCCCGAACTTTGGATAGAATTTTAAT
GAAGTTACGATTTTGTGCTCGTTGAAAATATATTTTTGAGTGGAATATTA
TCAAGCAAAAAATATTCGTTCGATCAAAAGATATCAAACAAAGTTTGTTA
TTGGTTGATTGACAAAAAGGCCGTTTTTTGTCGTTTTTCACTACTTTTAG
AGTCAACCAGCAATAATTTTTGTTTGATATCTTTTGAATGAATATTTTTG
AAACTAGGATTGAAGAGTCAATTATACCACATTTCTACAAGAAGTTAATT
TTTTTCTTCTTCATATTCATTTTAATTGTTTTACTTGATAATATTCCACT
CACAAATATTTTTTCAACGAGCACAAAATCGTAACTTGATTCGATTTCTA
TCAAAATTTACAGCCATTTTTGTTTCAGCTGCAAATTATGTTGAGACAGA
TTTTTAGTTCACCATTTTGTAAATTTTTTATGGTTAATGTAACCAAACTC
TTCTTATTGGGCTCTTCCAGAAAATGTCCGTTCATGGGGTGGAGGTTATT
GTCCTGGGGGTAGCGAAAAATCATCAAAATTTGCCTTGTCCGGGTGTAAT
TTGGGTTATCCGGGGGGTCAACTGATGCTTGTCCGGGTGTAAATAACTGA
AAATCGTTGTATCCTTTACCCCCCATATTCAAAGTTTTTCTGGAAAAGCC
CATTAAAACTTTCTTTTCTTCTTTTCATTTAGATACAAGAGCGGCAAAAA
CAAATGGTTCTTCCAAAAACTCAGATTCTAATTTGGACAGTGGAAATAAA
AAAATTGTAAAACACGAACTCTTTTCTCTCGTTTCTTTTCCTAGCCTGCC
TGAGTAGAAAGTGGACGTCTTACTTGCAATACAGCATGCACTTTTCTGCA
TGGGGCTTCAATGGCCATCCCATTTCCATTTAATTTCCATACACGGGGAG
AGAGGCGAACCCAATACACGGGTTTCGAATTAAATCTGGCGCGAGAGAAA
AAATCAAGTAAATAAAAGGAGCGATAAGGGGAAATGCCTTATAAAAGGTT
GGTAGATTTCCTTTCTTCTCTTTTGAAAGCCAGGTGTTCATTCAAAAGAT
GTTTTTCTATTTTAAATTCAATAAAAGAAATATGATTAAACGATTGACTT
TTTA

Coding sequence (CDS) from alignment at scaffold_36:1004216..1013369-

>TCONS_00061677 ID=TCONS_00061677|Name=TCONS_00061677|organism=Clytia hemisphaerica|type=CDS|length=1233bp|location=Sequence derived from alignment at scaffold_36:1004216..1013369- (Clytia hemisphaerica)
ATACAAGAGCGGCAAAAACAAATGGTTCTTCCAAAAACTCAGATTCTAAA
TACTCAGTCGATGTTCCATTAAACAAATCTGTTGTAAATAAAGATGTGTT
AAAAGATTCCAGCAAAAGGAAGCGAGCCAGAACCGAAGTAAAAGCTAAAC
TGGAAGACAGATGGGCAAGTTCATGAAATCTGGTAAAGTTGTCCTTGTCC
TTGGTGGCAAGTATGCTGGCAGAAAGGCCATTATCGTCAAAAACTACGAT
GATGGAACACAAGACAGACAATACGGCCATGCCCTTGTTGCTGGCATTGA
CAGATACCCATTGAAAGTCACCAAAAGCATGGGCAAGAAACGTGTTTCCA
AGAGGTCCAAGATCAAGACTTTTGTTAAAATTGTTAACTACAATCACTTG
ATGCCCACAAGATACAAGAGCGGCAAAAACAAATGGTTCTTCCAAAAACT
CAGATTCTAAATACTCAGTCGATGTTCCATTAAACAAATCTGTTGTAAAT
AAAGATGTGTTAAAAGATTCCAGCAAAAGGAAGCGAGCCAGAACCGAAGT
AAAAGCTAAACTGGAAGACAGATGGGCAAGTTCATGAAATCTGGTAAAGT
TGTCCTTGTCCTTGGTGGCAAGTATGCTGGCAGAAAGGCCATTATCGTCA
AAAACTACGATGATGGAACACAAGACAGACAATACGGCCATGCCCTTGTT
GCTGGCATTGACAGATACCCATTGAAAGTCACCAAAAGCATGGGCAAGAA
ACGTGTTTCCAAGAGGTCCAAGATCAAGACTTTTGTTAAAATTGTTAACT
ACAATCACTTGATGCCCACAAGATACAAGAGCGGCAAAAACAAATGGTTC
TTCCAAAAACTCAGATTCTAAATACTCAGTCGATGTTCCATTAAACAAAT
CTGTTGTAAATAAAGATGTGTTAAAAGATTCCAGCAAAAGGAAGCGAGCC
AGAACCGAAGTAAAAGCTAAACTGGAAGACAGATGGGCAAGTTCATGAAA
TCTGGTAAAGTTGTCCTTGTCCTTGGTGGCAAGTATGCTGGCAGAAAGGC
CATTATCGTCAAAAACTACGATGATGGAACACAAGACAGACAATACGGCC
ATGCCCTTGTTGCTGGCATTGACAGATACCCATTGAAAGTCACCAAAAGC
ATGGGCAAGAAACGTGTTTCCAAGAGGTCCAAGATCAAGACTTTTGTTAA
AATTGTTAACTACAATCACTTGATGCCCACAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038676XLOC_038676Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061677-exon-scaffold_36-1575043694:1013286..1013369TCONS_00061677-exon-scaffold_36-1575043694:1013286..1013369Clytia hemisphaericaexon
TCONS_00061677-exon-scaffold_36-1575043694:1010649..1010899TCONS_00061677-exon-scaffold_36-1575043694:1010649..1010899Clytia hemisphaericaexon
TCONS_00061677-exon-scaffold_36-1575043694:1009826..1009936TCONS_00061677-exon-scaffold_36-1575043694:1009826..1009936Clytia hemisphaericaexon
TCONS_00061677-exon-scaffold_36-1575043694:1004216..1004637TCONS_00061677-exon-scaffold_36-1575043694:1004216..1004637Clytia hemisphaericaexon
TCONS_00061677-exon-scaffold_36-1510915933:1013286..1013369TCONS_00061677-exon-scaffold_36-1510915933:1013286..1013369Clytia hemisphaericaexon
TCONS_00061677-exon-scaffold_36-1510915933:1010649..1010899TCONS_00061677-exon-scaffold_36-1510915933:1010649..1010899Clytia hemisphaericaexon
TCONS_00061677-exon-scaffold_36-1510915933:1009826..1009936TCONS_00061677-exon-scaffold_36-1510915933:1009826..1009936Clytia hemisphaericaexon
TCONS_00061677-exon-scaffold_36-1510915933:1004216..1004637TCONS_00061677-exon-scaffold_36-1510915933:1004216..1004637Clytia hemisphaericaexon
TCONS_00061677-exon-scaffold_36-1491911889:1013286..1013369TCONS_00061677-exon-scaffold_36-1491911889:1013286..1013369Clytia hemisphaericaexon
TCONS_00061677-exon-scaffold_36-1491911889:1010649..1010899TCONS_00061677-exon-scaffold_36-1491911889:1010649..1010899Clytia hemisphaericaexon
TCONS_00061677-exon-scaffold_36-1491911889:1009826..1009936TCONS_00061677-exon-scaffold_36-1491911889:1009826..1009936Clytia hemisphaericaexon
TCONS_00061677-exon-scaffold_36-1491911889:1004216..1004637TCONS_00061677-exon-scaffold_36-1491911889:1004216..1004637Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061677-proteinTCONS_00061677-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:1004216..1013369 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1011.02	996.248	1022.63	1089.25	877.069	719.235	1200.18	1281.28	1840.32	1578.35	1935.96	2393.62	2502.14	2447.58	2461.08	2394.12	2515.9	2622.87	1360.71	1586.72	2615.49	2456.95	1804.63	1725.35	2012.62	2042.37	2472.64	2532.99	1490.18	1474
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005824KOW
IPR001141Ribosomal_L27e
IPR014722Rib_L2_dom2
IPR018262Ribosomal_L27e_CS
IPR008991Translation_prot_SH3-like
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005622 intracellular
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome
Blast
[Close]
BLAST of TCONS_00061677 vs. Swiss-Prot (Human)
Match: RL27 (60S ribosomal protein L27 OS=Homo sapiens GN=RPL27 PE=1 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 1.546e-70
Identity = 101/136 (74.26%), Postives = 120/136 (88.24%), Query Frame = 1 
Query:   85 MGKFMKSGKVVLVLGGKYAGRKAIIVKNYDDGTQDRQYGHALVAGIDRYPLKVTKSMGKKRVSKRSKIKTFVKIVNYNHLMPTRYSVDVPLNKSVVNKDVLKDSSKRKRARTEVKAKLEDRYKSGKNKWFFQKLRF 492
            MGKFMK GKVVLVL G+Y+GRKA+IVKN DDGT DR Y HALVAGIDRYP KVT +MGKK+++KRSKIK+FVK+ NYNHLMPTRYSVD+PL+K+VVNKDV +D + +++AR E K K E+RYK+GKNKWFFQKLRF
Sbjct:    1 MGKFMKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAKRSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEERYKTGKNKWFFQKLRF 136
The following BLAST results are available for this feature:
BLAST of TCONS_00061677 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RL271.546e-7074.2660S ribosomal protein L27 OS=Homo sapiens GN=RPL27... [more]
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