TCONS_00061665 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061665
Unique NameTCONS_00061665
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length711

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061665 ID=TCONS_00061665|Name=TCONS_00061665|organism=Clytia hemisphaerica|type=transcript|length=711bp
GTATTTATTGAATATCTTTCATGGACGATGTGATTATTTTTCAACAGGTC
AAGCGCGTCTTTAACGAGGTAAAGGCCATGTCAAAAAGCGATCTCTACGA
TGCCTTAAAATCCGGTCACACCAATCCCAAGATGTTAGCTTTACATTTCA
CTGCAATACAAGAAAAGGGCCTAGTTTATTTAGACGATATCTACAACCTC
GAAGTCTCAACACCGCTTACAGTTATCATTCACGCCATTTACCCCGGACT
CTGTCTTTCGAAGAAGAAACTCGACGCACTCAACGCAGAAAGATTGCTCG
TTGCTGAACATTGGTCAACCGAATCCGACACCGCGGCATACGCCTGTGAA
AATGCCCTTAAAAACCAACTGCATACGCATGNTCAACGCAGAAAGATTGC
TCGTTGCTGAACATTGGTCAACCGAATCCGACACCGCGGCATACGCCTGT
GAAAATGCCCTTAAAAACCAACTGCATACGTATGATGTCCTTCTTATCCG
CGCGACCCAACACAAGGGGACTGGGCGTGAGAAGTCGGATAGGAGAACAA
TTCGTCAATACGTCTGGCAGCACCTCCAGGACATGTTCTCCAAGGCTGTC
GATAGAGGATGTGTCACCTATTCCACACAGCAGCAGGCGAAGGGATTCTG
CTGTAACGGAAAACCAGACGTCACCGGAGAATTACAAGAGAACGTCCCTG
CTGTCCACCCC
Run BLAST on NCBI

transcript from alignment at scaffold_36:567239..567949-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061665 ID=TCONS_00061665|Name=TCONS_00061665|organism=Clytia hemisphaerica|type=transcript|length=711bp|location=Sequence derived from alignment at scaffold_36:567239..567949- (Clytia hemisphaerica)
GTATTTATTGAATATCTTTCATGGACGATGTGATTATTTTTCAACAGGTC
AAGCGCGTCTTTAACGAGGTAAAGGCCATGTCAAAAAGCGATCTCTACGA
TGCCTTAAAATCCGGTCACACCAATCCCAAGATGTTAGCTTTACATTTCA
CTGCAATACAAGAAAAGGGCCTAGTTTATTTAGACGATATCTACAACCTC
GAAGTCTCAACACCGCTTACAGTTATCATTCACGCCATTTACCCCGGACT
CTGTCTTTCGAAGAAGAAACTCGACGCACTCAACGCAGAAAGATTGCTCG
TTGCTGAACATTGGTCAACCGAATCCGACACCGCGGCATACGCCTGTGAA
AATGCCCTTAAAAACCAACTGCATACGCATGNTCAACGCAGAAAGATTGC
TCGTTGCTGAACATTGGTCAACCGAATCCGACACCGCGGCATACGCCTGT
GAAAATGCCCTTAAAAACCAACTGCATACGTATGATGTCCTTCTTATCCG
CGCGACCCAACACAAGGGGACTGGGCGTGAGAAGTCGGATAGGAGAACAA
TTCGTCAATACGTCTGGCAGCACCTCCAGGACATGTTCTCCAAGGCTGTC
GATAGAGGATGTGTCACCTATTCCACACAGCAGCAGGCGAAGGGATTCTG
CTGTAACGGAAAACCAGACGTCACCGGAGAATTACAAGAGAACGTCCCTG
CTGTCCACCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038667XLOC_038667Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061665-exon-scaffold_36-1575043694:567239..567949TCONS_00061665-exon-scaffold_36-1575043694:567239..567949Clytia hemisphaericaexon
TCONS_00061665-exon-scaffold_36-1510915933:567239..567949TCONS_00061665-exon-scaffold_36-1510915933:567239..567949Clytia hemisphaericaexon
TCONS_00061665-exon-scaffold_36-1491911889:567239..567949TCONS_00061665-exon-scaffold_36-1491911889:567239..567949Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:567239..567949 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.219973	0.0872118	0.149431	0.171031	1.28585	0.796669	0.789433	0.913841	0	0.266146	0.291614	0.260513	0.233641	0.301772	0.143063	0.214991	0.135517	0.064369	0.106008	0.397159	0.610385	0.752058	0	0.144003	0.225922	0.312213	1.22584	0	0	0.0799193
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061665 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top