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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061656 ID=TCONS_00061656|Name=TCONS_00061656|organism=Clytia hemisphaerica|type=transcript|length=513bp
GGTTGGTTTGTTCAACGGAACGATTGCTGTATATAATATCAGAGCGTGTA
AAGACGAATGCGTTCTAGATAGTATTGATAGTCCTGGAAAGCATTCTTCA
CCGGTTTGGCAATTGAAATGGATCGAACGCGATAAAGGAACTGGGGATGA
AAAAGGAGAAGTGCTGATCTCAGCATCAGCTGATGGAAGAGTCACACAAT
GGTCCATCCGAAAAGGATTTGAATTCCTTGATCTGATGAAACTGAAGCGT
CTTACAGCAACAAAACAACAAGGCAACCGTAACAAGAATAAGCAACCTGA
AAACAGCCCGTCTGCTGCTAAAAAGAACGATGCGCTGATCTCTAGATATG
CATCTTGTATGTGTTTCGCCTTTCATAACTCAGATGGAAATGTATACATT
GCAGGCACAGAGGAAGGCTATATACATCGTTGTTCATGCTCATACAATGA
ACAATTCCTTGAAACATATTCTGGACATAAGAGTTCAGTGTACAAAGTCA
TGTGGTCACCGTT Run BLAST on NCBI transcript from alignment at scaffold_36:386228..394164- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061656 ID=TCONS_00061656|Name=TCONS_00061656|organism=Clytia hemisphaerica|type=transcript|length=7937bp|location=Sequence derived from alignment at scaffold_36:386228..394164- (Clytia hemisphaerica)
GGTTGGTTTGTTCAACGGAACGATTGCTGTATATAATATCAGAGCGTGTA
AAGACGAATGCGTTCTAGATAGTATGTAAGTATAAACAGGCATTCAAACT
TTTTAATTGATTTCCTGATTTCTAATGTACAAATATATTACCGTAGTTTC
AACCATCTTCCTATATAGTACAAGGCAAACCCTTAGGATTTGCCGCATCT
TTCGTGGAACTCGCATGTGATTGGTTCGAAAGTAGATATTATTTCGAAAC
TTTTTTTAAAAGGCCAATAAGGCCTGGCAAAAATTCTTATGACCTAAAAA
CTGACGTTAAGTAGGAAAATCTCTTAACCCTTTTAAAACGAGTAAAAAAT
CGACTGTTTTCAAAATTCGAATTCAACAAAAAATGATTGTTATCATCAGA
TGGGGCATGAAATTCTGAGCAAAAAAGTATATAGGATCTGCAACAAGTTA
GTAAATAAGAAACTCCTGACGTATTAAATCTTAATACAGTTCTTAATTAG
TTCTAAGGTTTTGCCAAATTTGAGCTTTGTCATCAATCAATCTATAGATT
TATGCTGAAATTTTAATAATCATTTTTGTTGCTATAGTGATAGTCCTGGA
AAGCATTCTTCACCGGTTTGGCAATTGAAATGGATCGAACGCGATAAAGG
AACTGGGGATGAAAAAGGAGAAGTGCTGATCTCAGCATCAGCTGATGGAA
GAGTCACACAATGGTCCATCCGAAAAGGATTTGAATTCCTTGGTAAGTAA
ATTAAGGTCGGTCTCAACTTTCGCGCGACACGAGCGAAAACTTTTTGACG
TTTTTGTAAAGCCATTGGTCGATTGAAAAATGAAGCAATTCCATTGGTCG
AAATTGACGTAACGGATGAAAAAAGTAGAACTTCCTTCAACTTTTTTTTT
GTTCGCGTAAAACTTTTTTATGGCGTAATCTTTTCTTCAGGCAAAAAAGG
TTAAGAAAAAAACTGTCGCCCATCTCGCGCGAATATGGAGACTGGCCTTT
ACTAACCTTATTCTACAGGGTTTTTTTTGACTTACTTTCATAGTCCGTGA
TTATCCTGATAGTTGGGTAGATTTTTCTTCGGGGTTGCCAACCCACCTTA
TTGACCGATCGAATCATTTCACTTATTACACACATAGAATCCATCAACCA
GTTCTGGAATCAGGAATGGGCTCTTCCAGAAAAAACCCGTTCATGGGGGA
TGGAGGATGAATTGTCCAGGGGGTAAATATGTGATGTCCAGGGGTCAATT
TTGGTGTCCAGAGGGTTTAATTGATGATTGTCTTTGGGGTGAAAAATGAA
AATGTCCAGGGGTAATTCATTGAAAAAATAATATATCCTCCACCCCCAAT
GAACGGATTTTTTCTGGAAGAGCCCAACCAGGGTTACGATTAAATATGCC
TTTCACCAACCATTGAAAAAAGAGTCATTCTAAACATCCATTGTCTCTAT
TGCCTTTTTTGGACCTACCTTGGAGGTCCTTTAAATTAACCTTTGTCCGT
CCGTCCGTCCGTCTGTTACCAGCTTTTCTCGAGATTGGCTCATTAGTTTT
TTCTGATTTTTGGCACAAAGGTGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNGTGCAAAATAGTGATGCCCAAAACCGGTTT
TGTTTTTGTAGATCTGATGAAACTGAAGCGTCTTACAGCAACAAAACAAC
AAGGCAACCGTAACAAGAATAAGCAACCTGAAAACAGCCCGTCTGCTGCT
AAAAAGAACGATGCGCTGATCTCTAGATATGCATCTTGTATGTGTTTCGC
CTTTCATAACTCAGATGGAAATGTGTAAGTTGAATTTAGAATCCTTTCTA
TTTTTCGTCTGTAACTTTGAATACATTGCTAGTGAGGGCTGTACTGAGAA
ATATTGCCCGAGGTCAAGTAACGATCGAGCTTGCAACAAATGATGTCAAC
GCAGTGTTCATTTTCCTCTGAAAAAACTGATTGACATATTTTTTAAAAGG
GGCCGGCATTTACTTGAAAAATAATTTCAGAAAAGGTGCGTCAGCCGGGA
ATCGAACCCGGATCTATTGCTTGGAAGGCAACAATGCTAACCTTTACACC
ACCGACGCTTGAGAGATCTCAGAACATTCAAATATTTGTTCTAAAACCAC
CACAAACTCGTTAGTTCGATAAACTGTTCGAGGAAGGAAGTCATAAACAG
TTTGTTAAAAACCACAAACTGTGTTTAAGCGATAAACAAAACATTGAATC
TGAACTTCACTTTTAAAGGTTTTAGTTTTACATAAGTGCTTCTGTTTCAT
ATCAGACCGGTGTCTCCTTTTGTTATACTGTGTTCGATTTTGTGCTGAAT
ATACAAAAAATAGTTTTCCTTTCTTTTTTCTGCCCAATCTTGCTCCACAT
TCTTGTCAATTCCTTGTAAAAAAGCTCGTGAATTAAAATTGACGAAAATT
TCTAAAAGAATAAGCACATCCAGGCTCAGCCAAATTTTAGGTGTTCTAAT
AAAAAAAACTTGTATAAGAACAATTAGGCTGAAATTTGGGAAAATAATAA
GAATGTCGTAAGAACCTGCCCGACCTGAGAATTATTAGCCAAATTTGCTC
AATATTATCTTAATTCATAAAAAACTTTCGTGATTGCAGGGGGGGTCAGT
GTACTAGAAGGCGGCATGTATGTGCACTACAAGGTATTTTTCAAAACATG
ACACCCACCCACCCCTGAAGTACACCATACTACATGGAAAAATCCCGAAA
CCACCCCATACCCCCTATTTACTACCAGGTAGTACCTGGAAAAAAACCAA
AACCACCCAATACCCCCTATTTACTACCGGGTACTACCTGGGAAAAACTG
TACTCTTATTTTTTCAGTGTAAATTATATAAAACTTCTAATTTTTCCGAT
GGCACGGCGCTTTTTGTTTATTTAGTCTACACTTATCTGGCACCCCAGAT
GGTGAAATTTTCATCCGACACGCTAAAGCTCTGAAGGTCGGGAAAATTTT
CAATATCTGGAAGGTTTACATTACGGAATTTTGCGAGACCGCATCAAGAA
TTTTGCAGCGGGAGGTCTGGTAACCCAGCCCTTGTTTTCGGGGATTGGCG
GGTCTAACCGAAATATTTATAGGTTTACGCACAAGAGCTGTTGAACCTGA
CTGGGGGTGTGGCACATCAAAGGCCGACTATCATTCCTCTCCGATGGGAA
ATTGGCCCGCTCCTTTAAAGCTTTAGCGTGGGCAGCCGCCAATCCGCCAT
CGGAATATCAGATAAAGTCTATGCTAACTAATTCAGTGTTTTATGATTTG
TTAAACTCCAAATCTATCAATCTCACCCGAAAGGTACTCTTTTAAGTAAG
ATAGCCAGAGAAAACCTATGTGATACCTTAATATCTGAGATATGTTAGTT
TTTAAAAACGTGTTTTGTCCCCTTATTAGCATGAAATATTTAACATCGAC
TTTGTGACCCTTTCACACCCCAATTTTAGTATACAGGTAGTAAAAATCAG
AATCGATTTTGGACTCAACACCCCTATTTTGGTACACAGGTAGTAAAAAT
CAAAATCGACTTTGGACCCAACACCCCAATTATAGTACACAGGTAGTACA
TGACAAATTTTTTTCTCAAACACCCACGCACCCTAGGATACATGCCGCCT
TCTGGTACACTGACCCCCCCCCCCTGGTAATTGCAGTAATTCTTTTACTT
TCCAACATTAAACTAGAACAGATTTGATCAATTTGGAAGGTTATAGTACG
TTTAAGTAAATTAATTTCCAGAACACTAATAAGAACAGGCCAAATCAAGA
CGTTCTAATAAATAATAATACGTAGTTTTCATACTTTATTACCCTTGTTA
CCCTTATAAGAGGGCAAACAGTCGTTAGCCCATCATCTTTGAAATTCGTC
TATTTAGCCTAAAATGGGTAAATTAGCCCAGCGAAATATTAATAATGGCA
TCTTTTTTTTCAACAGAAACAAAATTTTCCAATTTTCAAAGAATATTCTT
ATTCCTGTTCAGCCCCAAGAAGTATGGACTTTTTATCTACAATCAGTGCC
ATAGCATATTAGCAATTTTGGCTATTTTACCATTTTTTGAAAATTGAAGT
TCGAGCGAGAATGTTAATTTCGGGCCTTCAGCTTGGTTTCATTGAATATT
TTGATCTGGGAAGGAATTCTTTGGTTTCTAAGCTATATTTCAAGCCCTAC
CGGACCATTTTCAAACTTTTGGATCCTCAGAGAGTGTTAAGTCTAGCGTT
AAAACTCAGAGTCAAAACTCGACCCTTCCAGCCTAATTTAGAGCGCCTCC
AAGTTGTTTGTGGTTATAAAATTTCGTGTTGTTGAAGCGTTGTTAACAAG
TTCACCTTTGAATCTTATTAATGCTTTGTCAAGGCCTAGCATTTCTCGCA
TTTCAAGATCGGTATTGGTAGCTATAGCTATGATATAGTGATATATCACG
AGAGAGAGTTTTCACGGTCTCAATGGTTTGCATTTCAATCATAGTGGGGG
TGTCGTCGAGAATTTTAGATACTGCGAGTATAGTTTGTTCCGATGGATTT
ATAAATTTCCCTTTTGTGCCAAGTATTTTGGCACTGATTGTAGGAAAGAT
ACGAAAAGTCAACTAACGACAAAATTCGAAGAATACGGTTTTTTGATATA
TACTAATTGACACGATGAAATATTTCGTTCGCTATTTTGCAATACAGTGA
ACTCTTCTTTATTCGAATTAAAACGGGAAATTTTATTTATTCGAATTACA
GAGGGATTCGAAATTATAGAAAACATTTTAAGAGTGTTCTTCCTTGTAGG
GGACAGGAAATAAGTTCGAATTATAGAAAGATTTGAAGAGGCGAACCTTT
TCAAGGCAAAAAAAGATTCTTAGAAATTTTGTGGATACTCCCTGAGAAAT
GGCAAAGTTTGCGAAAGCACCCAAAATATTTTCTCTTACCTTAAAAGTGA
GGGTGGACAAACTAAAAAAAGTATTTTACCTCCTGGAAATGCTTCTTCGA
ATACCCTCTGGAAATGTTCGTCCACCCCCTGTATGGATATAAAATGGAAT
GGCCCATTATCTTCATGTACCGTCAACTGCTCTAACTTGGGACGATTGGT
TGAAACATGGGACTGGTTGATATCTGGCCTGTATTTTCACTTACTTTTAA
ATCTCTTTGACAACAAATTTGTTTTGATAACTCCACCAGGTTTATCAATC
ATACTTCTTCGTTCCTCTTAGCGTGCACAGTCATAGACACTCGCGTGTGT
TCTATTTAAAAGCCTACTCGGTACGAAAGAGAAATCGTTATTTTTTAATA
CGCCGTTCATTTACTCAAATCAAATTACTTTGGAGGTTCGATGAAATGAT
GGCCGAATTGCCGTCCTATGTTTTATCAGATGGTCCCAAGTATATTATGA
CGCTTCTTGAAACATACCATTGTGCAATTTTTTCTCTTCCATTTCAGATA
CATTGCAGGCACAGAGGAAGGCTATATACATCGTTGTTCATGCTCATACA
ATGAACAATTCCTTGAAACATATTCTGGACATAAGGTATGTGACATACCG
ACCTTAATCAGTATCCAAGGTTTGTCTATCTCAGACGGATTTCTGTCTCA
ATGAAACATATATTCTCAATTTCTGTACAGGGTGTCCCTAATTAAAGTAT
CGAGTCGAAACACAACTATGAGTAGAAAGTTTTATGTGAGTTTTCACAAA
ATTGTATTTTAAGCTCTCCCTCTTTTTTCTTTGTCATTACGATTAATTTA
TACGTTGTAACTACCTTTTGTAATAAGCCTATGTGATGGAGAACGTTCTT
ATATTTTAGCGATAACACACACACAAACTTTTCTACTCAATCGCATGTTC
AAACTCGTTACTTTGATTAGGGACACCCTGTATAATACACAGGTTGCAAA
ATTAAAGTCTGAAGACAAATCACGCTTTTACTAGAAATTTTTATGTGCTT
TTTACATGACATTTATTTCTAATTGGTTCGAATTTATTGGCACTAATAAA
GTTATCAGCTGTAAGTTGTAAAACAAGTAACATGGGAATAAAATCACGTG
AACTTCTTGATTAATCGCATGTTTTGACTGCATTGCTATAACTTTCGACC
TGTGTATTCACCAAAATTTCAATCCGTCTCAATCGAAAAACCTTGCCTTA
ACCAATGTAGTTTAAAGAGAGAGCTTTCACTATAAAGTACAAACCCTTTG
CAGGTCAAGTACAAACCATGAGCTAAGTTTTATCTTAACCATTGCTTATT
TAATCCCCACCTGTCAATCAACCACTCCTTTATTCACTGCCGTTCGTTCG
TTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTT
CGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCATTCATTCATTCATACA
TTTATTAATGCGTTCGTTCATTCGTCCATCATTTTGTTCACTCATTCATT
ATATTTCAGAGTTCAGTCATGTGGTCACCGTTCGACAGTTCATTTTTTTC
CTGGGCTTCATTTTTCCATTTTTTTTTTCATTCATTCATTCATTCATTTA
TATTTCAGAGTTCAGTGTACAAAGTCACTTGGTCACCGTTTGACAGTTCA
TTTTTCTTGAGCTTCATTTTTCCTTTTTTTTTCATTCACTCATTTATTCA
TTCATTTTATTCAGTTATTCATTATATTTCAGAGTTCAGTCATGTGGTCA
CCGTTCGACAGTTCATTTTTTTCCTGGGCTTCATTTTTCCATTTTTTTTT
TCATTCATTCATTCATTCATTTATATTTCAGAGTTCAGTGTACAAAGTCA
CTTGGTCACCGTTTGACAGTTCATTTTTCTTGAGCTTCATTTTTCCTTTT
TTTTTCATTCACTCATTTATTCATTCATTTTATTCAGTTATTCATTATAT
TTCAGAGTTCAGTCATGTGGTCACCGTTCGACAGTTCATTTTTTTCCTGG
GCTTCATTTTTCCATTTTTTTTTTCATTCATTCATTCATTCATTTATATT
TCAGAGTTCAGTGTACAAAGTCACTTGGTCACCGTTTGACAGTTCATTTT
TCTTGAGCTTCATTTTTCCTTTTTTTTTCATTCACTCATTTATTCATTCA
TTTTATTCAGTTATTCATTATATTTCAGAGTTCAGTCATGTGGTCACCGT
TCGACAGTTCATTTTTTTCCTGGGCTTCATTTTTCCATTTTTTTTTTCAT
TCATTCATTCATTCATTTATATTTCAGAGTTCAGTGTACAAAGTCACTTG
GTCACCGTTTGACAGTTCATTTTTCTTGAGCTTCATTTTTCCTTTTTTTT
TCATTCACTCATTTATTCATTCATTTTATTCAGTTATTCATTATATTTCA
GAGTTCAGTCATGTGGTCACCGTTCGACAGTTCATTTTTTTCTGAGCTTC
ATTTTTCCATATTTCGATCATTCATTCATTCATTCACTTATTATTTATAT
TTCAGAGTTCAGTGTACAAAGTCATGTGGTCACCGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061656-exon-scaffold_36-1575043694:394090..394164 | TCONS_00061656-exon-scaffold_36-1575043694:394090..394164 | Clytia hemisphaerica | exon |
| TCONS_00061656-exon-scaffold_36-1575043694:393423..393577 | TCONS_00061656-exon-scaffold_36-1575043694:393423..393577 | Clytia hemisphaerica | exon |
| TCONS_00061656-exon-scaffold_36-1575043694:391891..392053 | TCONS_00061656-exon-scaffold_36-1575043694:391891..392053 | Clytia hemisphaerica | exon |
| TCONS_00061656-exon-scaffold_36-1575043694:388180..388267 | TCONS_00061656-exon-scaffold_36-1575043694:388180..388267 | Clytia hemisphaerica | exon |
| TCONS_00061656-exon-scaffold_36-1575043694:386228..386259 | TCONS_00061656-exon-scaffold_36-1575043694:386228..386259 | Clytia hemisphaerica | exon |
| TCONS_00061656-exon-scaffold_36-1510915933:394090..394164 | TCONS_00061656-exon-scaffold_36-1510915933:394090..394164 | Clytia hemisphaerica | exon |
| TCONS_00061656-exon-scaffold_36-1510915933:393423..393577 | TCONS_00061656-exon-scaffold_36-1510915933:393423..393577 | Clytia hemisphaerica | exon |
| TCONS_00061656-exon-scaffold_36-1510915933:391891..392053 | TCONS_00061656-exon-scaffold_36-1510915933:391891..392053 | Clytia hemisphaerica | exon |
| TCONS_00061656-exon-scaffold_36-1510915933:388180..388267 | TCONS_00061656-exon-scaffold_36-1510915933:388180..388267 | Clytia hemisphaerica | exon |
| TCONS_00061656-exon-scaffold_36-1510915933:386228..386259 | TCONS_00061656-exon-scaffold_36-1510915933:386228..386259 | Clytia hemisphaerica | exon |
| TCONS_00061656-exon-scaffold_36-1491911889:394090..394164 | TCONS_00061656-exon-scaffold_36-1491911889:394090..394164 | Clytia hemisphaerica | exon |
| TCONS_00061656-exon-scaffold_36-1491911889:393423..393577 | TCONS_00061656-exon-scaffold_36-1491911889:393423..393577 | Clytia hemisphaerica | exon |
| TCONS_00061656-exon-scaffold_36-1491911889:391891..392053 | TCONS_00061656-exon-scaffold_36-1491911889:391891..392053 | Clytia hemisphaerica | exon |
| TCONS_00061656-exon-scaffold_36-1491911889:388180..388267 | TCONS_00061656-exon-scaffold_36-1491911889:388180..388267 | Clytia hemisphaerica | exon |
| TCONS_00061656-exon-scaffold_36-1491911889:386228..386259 | TCONS_00061656-exon-scaffold_36-1491911889:386228..386259 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:386228..394164 - |
Blast
BLAST of TCONS_00061656 vs. Swiss-Prot (Human)
Match: WDR78 (WD repeat-containing protein 78 OS=Homo sapiens GN=WDR78 PE=2 SV=1) HSP 1 Score: 202.216 bits (513), Expect = 1.844e-60 Identity = 98/171 (57.31%), Postives = 123/171 (71.93%), Query Frame = 2
Query: 2 VGLFNGTIAVYNIRACKDECVLDSIDSPGKHSSPVWQLKWIERDKGT-GDEKGEVLISASADGRVTQWSIRKGFEFLDLMKLKRLTATKQQGNRNKNKQPENSPSAAKKNDALISRYASCMCFAFHNSDGNVYIAGTEEGYIHRCSCSYNEQFLETYSGHKSSVYKVMWSP 511
VG NGTIA+YN+R+ + VLDS +SP KH PVWQL+WIE+D+GT GD K E+L+S SADGR+++W IRKG + DLM+LKR TA + KK++ALISR A MCFAFH D N+Y+AGTEEG+IH+CSCSYNEQ+L+TY GHK VYKV W+P
Sbjct: 554 VGYHNGTIAIYNVRSNSNVPVLDSSESPQKHLGPVWQLQWIEQDRGTTGDGKREILVSISADGRISKWVIRKGLDCYDLMRLKRTTAASNKKGG----------EKEKKDEALISRQAPGMCFAFHPKDTNIYLAGTEEGHIHKCSCSYNEQYLDTYRGHKGPVYKVTWNP 714
The following BLAST results are available for this feature:
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