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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061648 ID=TCONS_00061648|Name=TCONS_00061648|organism=Clytia hemisphaerica|type=transcript|length=5761bpRun BLAST on NCBI protein sequence of TCONS_00061648-protein >TCONS_00061648-protein ID=TCONS_00061648-protein|Name=TCONS_00061648-protein|organism=Clytia hemisphaerica|type=polypeptide|length=641bp MDRPLVNTKETNTTKQPIHHKEYYKLTKMESWMKSHVNESLDVGTNTIPERun BLAST on NCBI transcript from alignment at scaffold_36:50445..168828- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00061648 ID=TCONS_00061648|Name=TCONS_00061648|organism=Clytia hemisphaerica|type=transcript|length=118384bp|location=Sequence derived from alignment at scaffold_36:50445..168828- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_36:50445..168828- >TCONS_00061648 ID=TCONS_00061648|Name=TCONS_00061648|organism=Clytia hemisphaerica|type=CDS|length=7704bp|location=Sequence derived from alignment at scaffold_36:50445..168828- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00061648 vs. Swiss-Prot (Human)
Match: PDE4D (cAMP-specific 3',5'-cyclic phosphodiesterase 4D OS=Homo sapiens GN=PDE4D PE=1 SV=2) HSP 1 Score: 528.094 bits (1359), Expect = 9.315e-165 Identity = 279/523 (53.35%), Postives = 374/523 (71.51%), Query Frame = 3
Query: 2067 RTANKYTXIHGDEL-VTPFAQVLSSLKSVRSNFVLLTNIRQNRLRRGSEGFHLNSRLCQLYEINDGSMIRDDMYKKLTMETLKEFDWCLDQLDTLRASMSISEMASNKFKRLLDRELKDFSETG--GSEISAWVFDNFVDKSLE----SLPNKDXXXXXXXXXXXXXXXXXXXXXXXCSGSVPRFGAECKDEETLEQIFNCVDTWDFDVFKLAEYTGNRPLMSITYTILQTRDLLKMFKIKPWVFSNYITLVESHYIKDIPFHNSTHAADVVHATHVLLSSGAFEGVFTDLEXXXXXXXXXXXXXXXPGVNNNFLVNSSSEMALLYNDESVLENHHLAVAFQLMQGENCDILESFSKAERQQFRKMVIEMVLATDNAKHMNILGSLKTMVETKKLSEQSMRPVQLESTSEKMHVLKCLVHCADLSNPTRPLPMYETWVERLMEEFFRQGDVERDRKMEISPMMDRHNANIEKSQVVFIDYVVHPLWETWADLVYPDAQPILNNLQTNREYYRSRCPQSPSNTP 3614
R ++ + IHGD+L VTPFAQVL+SL++VR+NF LTN++ + S +C IN + I ++ Y+KL ETL+E DWCLDQL+TL+ S+SEMASNKFKR+L+REL SE G+++S ++ + F+DK E S K+ K + + K + S + S+PRFG + + E+ L + V+ W VF++AE +GNRPL I +TI Q RDLLK FKI Y+ +E HY D+ +HN+ HAADVV +THVLLS+ A E VFTDLEILAA+ A+A+HDVDHPGV+N FL+N++SE+AL+YND SVLENHHLAV F+L+Q ENCDI ++ +K +RQ RKMVI++VLATD +KHMN+L LKTMVETKK++ + + L++ S+++ VL+ +VHCADLSNPT+PL +Y W +R+MEEFFRQGD ER+R MEISPM D+HNA++EKSQV FIDY+VHPLWETWADLV+PDAQ IL+ L+ NRE+Y+S PQSPS P
Sbjct: 208 RNSSIASDIHGDDLIVTPFAQVLASLRTVRNNFAALTNLQDRAPSK-------RSPMCNQPSINKAT-ITEEAYQKLASETLEELDWCLDQLETLQTRHSVSEMASNKFKRMLNRELTHLSEMSRSGNQVSEFISNTFLDKQHEVEIPSPTQKEKEKKKRPMSQISGVKKLMHSSSLTNSSIPRFGVKTEQEDVLAKELEDVNKWGLHVFRIAELSGNRPLTVIMHTIFQERDLLKTFKIPVDTLITYLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHPGVSNQFLINTNSELALMYNDSSVLENHHLAVGFKLLQEENCDIFQNLTKKQRQSLRKMVIDIVLATDMSKHMNLLADLKTMVETKKVTSSGV--LLLDNYSDRIQVLQNMVHCADLSNPTKPLQLYRQWTDRIMEEFFRQGDRERERGMEISPMCDKHNASVEKSQVGFIDYIVHPLWETWADLVHPDAQDILDTLEDNREWYQSTIPQSPSPAP 720 The following BLAST results are available for this feature:
BLAST of TCONS_00061648 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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