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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061631 ID=TCONS_00061631|Name=TCONS_00061631|organism=Clytia hemisphaerica|type=transcript|length=1280bp
taacgttaaatgaagttgtgtgccagctgggaaaggtACGACCAGACGTt
gtatatttcaaatttttattataGGATAAGAATgtaattggaaaaaaaat
aaatcatcaaGTGATCACACCATTCAACAAATAAACTACCTGATAGTAAT
ACACTTCTGTGCACAATCACGATGAAATCGCGAAAGATCATATACACTGG
AACATGTATCTTAACCTTTGTCATCATGGTCGTTGCAACTATAGGCAATA
GTTGGAATACAATGAAACACATTGCAACAGTCAACGTGAACGGTCAACAG
CGGATCATAAGCATCGATGAAGGTCTATGGAAAGTTTGTGTTTATTCAGA
TTACCAAGGAACAGTACGTGGTTGCACCACTATTGAATCTTCAATCACAG
ACAAACACATTAATGAGGACCATGAGGTACCAGGATGGTTACAAGCGTGT
CGCGCGTTCACGGTGTTATCGTGTTTAGCTGGTCTCGTTGGTGTGATCAT
GATTTTAGTAAGTTTTAAACGTGAGATAGACCAAACACGATTTATTGTAT
CATTTTCTTTCGTAGCTGCAACAGTACTGATGCTCNCTTTAAACGTGAGA
TAGACCAGACACGATTTATTGTATCGTTTTCTTTCGTAGCTGCAACAGTA
CTGATGCTCATTGGTATTGTGGTTTATACAATTCACTTTGAAAGTGCTAC
GGAGTTCGCCTCCCAAGACGTATTGATACCAAACGATACTGATTACGGTT
GGGCGTATATATCAGCCTGGATTGGAGTGATTTTATCGGGTATACAtgct
tttattattttcttcgTGCAAAAGAAAAACGCATACAGATATTGATTGAT
GTAAGGAagatttttggcaaaatcaaAAGACAGGAGAGGAGAGGAGAATT
GGAAAATATATGCCTGCGCTGAATCTGAATTGAGGGTTATTGGATTACAT
CAGAAACTTATCAAAGAATCTTATTGAAGACAATCTTTAATTTCAGACTT
AGATTTTCAACCCAGACAATTTGAGCGGAATTTTCCTCGAACAATACGAA
GGGAAATCTGTCCAGATTTGTGCGTTTCCCCTGTTGAATAGAAAATGGAA
TGAAACAAATgtacgaatcctatgaaataagCTAACACCCGTTCTGATTA
ACACTATTGGATAGATTTCTAAGGCAGACGTTACATTTAAGATTAACGAA
GCAGCCGTGATAgagatttttaattatttagttttcaaaagaacaattgc
aaaaataattaaaaagagGCAACATCTACT Run BLAST on NCBI protein sequence of TCONS_00061631-protein >TCONS_00061631-protein ID=TCONS_00061631-protein|Name=TCONS_00061631-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
MKSRKIIYTGTCILTFVIMVVATIGNSWNTMKHIATVNVNGQQRIISIDE
GLWKVCVYSDYQGTVRGCTTIESSITDKHINEDHEVPGWLQACRAFTVLS
CLAGLVGVIMILVSFKREIDQTRFIVSFSFVAATVLMLXLNVR Run BLAST on NCBI transcript from alignment at scaffold_36:1345238..1346517+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061631 ID=TCONS_00061631|Name=TCONS_00061631|organism=Clytia hemisphaerica|type=transcript|length=1280bp|location=Sequence derived from alignment at scaffold_36:1345238..1346517+ (Clytia hemisphaerica)
taacgttaaatgaagttgtgtgccagctgggaaaggtACGACCAGACGTt
gtatatttcaaatttttattataGGATAAGAATgtaattggaaaaaaaat
aaatcatcaaGTGATCACACCATTCAACAAATAAACTACCTGATAGTAAT
ACACTTCTGTGCACAATCACGATGAAATCGCGAAAGATCATATACACTGG
AACATGTATCTTAACCTTTGTCATCATGGTCGTTGCAACTATAGGCAATA
GTTGGAATACAATGAAACACATTGCAACAGTCAACGTGAACGGTCAACAG
CGGATCATAAGCATCGATGAAGGTCTATGGAAAGTTTGTGTTTATTCAGA
TTACCAAGGAACAGTACGTGGTTGCACCACTATTGAATCTTCAATCACAG
ACAAACACATTAATGAGGACCATGAGGTACCAGGATGGTTACAAGCGTGT
CGCGCGTTCACGGTGTTATCGTGTTTAGCTGGTCTCGTTGGTGTGATCAT
GATTTTAGTAAGTTTTAAACGTGAGATAGACCAAACACGATTTATTGTAT
CATTTTCTTTCGTAGCTGCAACAGTACTGATGCTCNCTTTAAACGTGAGA
TAGACCAGACACGATTTATTGTATCGTTTTCTTTCGTAGCTGCAACAGTA
CTGATGCTCATTGGTATTGTGGTTTATACAATTCACTTTGAAAGTGCTAC
GGAGTTCGCCTCCCAAGACGTATTGATACCAAACGATACTGATTACGGTT
GGGCGTATATATCAGCCTGGATTGGAGTGATTTTATCGGGTATACAtgct
tttattattttcttcgTGCAAAAGAAAAACGCATACAGATATTGATTGAT
GTAAGGAagatttttggcaaaatcaaAAGACAGGAGAGGAGAGGAGAATT
GGAAAATATATGCCTGCGCTGAATCTGAATTGAGGGTTATTGGATTACAT
CAGAAACTTATCAAAGAATCTTATTGAAGACAATCTTTAATTTCAGACTT
AGATTTTCAACCCAGACAATTTGAGCGGAATTTTCCTCGAACAATACGAA
GGGAAATCTGTCCAGATTTGTGCGTTTCCCCTGTTGAATAGAAAATGGAA
TGAAACAAATgtacgaatcctatgaaataagCTAACACCCGTTCTGATTA
ACACTATTGGATAGATTTCTAAGGCAGACGTTACATTTAAGATTAACGAA
GCAGCCGTGATAgagatttttaattatttagttttcaaaagaacaattgc
aaaaataattaaaaagagGCAACATCTACT Coding sequence (CDS) from alignment at scaffold_36:1345238..1346517+ >TCONS_00061631 ID=TCONS_00061631|Name=TCONS_00061631|organism=Clytia hemisphaerica|type=CDS|length=432bp|location=Sequence derived from alignment at scaffold_36:1345238..1346517+ (Clytia hemisphaerica)
ATGAAATCGCGAAAGATCATATACACTGGAACATGTATCTTAACCTTTGT
CATCATGGTCGTTGCAACTATAGGCAATAGTTGGAATACAATGAAACACA
TTGCAACAGTCAACGTGAACGGTCAACAGCGGATCATAAGCATCGATGAA
GGTCTATGGAAAGTTTGTGTTTATTCAGATTACCAAGGAACAGTACGTGG
TTGCACCACTATTGAATCTTCAATCACAGACAAACACATTAATGAGGACC
ATGAGGTACCAGGATGGTTACAAGCGTGTCGCGCGTTCACGGTGTTATCG
TGTTTAGCTGGTCTCGTTGGTGTGATCATGATTTTAGTAAGTTTTAAACG
TGAGATAGACCAAACACGATTTATTGTATCATTTTCTTTCGTAGCTGCAA
CAGTACTGATGCTCNCTTTAAACGTGAGATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061631-exon-scaffold_36-1491911889:1345238..1346517 | TCONS_00061631-exon-scaffold_36-1491911889:1345238..1346517 | Clytia hemisphaerica | exon |
| TCONS_00061631-exon-scaffold_36-1510915933:1345238..1346517 | TCONS_00061631-exon-scaffold_36-1510915933:1345238..1346517 | Clytia hemisphaerica | exon |
| TCONS_00061631-exon-scaffold_36-1575043694:1345238..1346517 | TCONS_00061631-exon-scaffold_36-1575043694:1345238..1346517 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:1345238..1346517 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR004031 | PMP22/EMP/MP20/Claudin |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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