TCONS_00061624 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061624
Unique NameTCONS_00061624
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2043

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061624 ID=TCONS_00061624|Name=TCONS_00061624|organism=Clytia hemisphaerica|type=transcript|length=2043bp
aaaacaataggcctattgtttagaacaatagaaaaataagaataatgctc
accctcaaccaaagtacactattcttataaaagaaaaagcgtgtatatta
tttgttattatcattattactaATAAGGTTCTCTGAAGAAGAAATCTTTC
CAAATGATTTACTtaataaaatagaaattcaaaggggaaaaatgaaaaca
aaaaagcaacTGAATACACAGAGTGGGAGACTTAACAACAAAAGAACAAC
AGCCAACACGAAACCTCCGCAACAATCAAAATATAGTTTCCGGGAACGTG
CGATTGTTATTGAATCATCCACAGAAAACGAATCGAGTGATGGTGAAACT
GTAGACTCAGAAATCGAGAGTAACAAAAAACACAGTGGAGAAAACGAAAA
AAACCCACAAATCTCAGGTGATGAGACTGAGAGTCTTTCAGAATCAGATG
TTGAGTCTCTGCCTCACAAGTCAACAAAAACACGTCAATCTCCAAGGAAA
TCACCTAGAAAACAACCTCCAGTAATAGATGACGACAACCCACAAACTTC
AGGTGATGAGACTGAGAGTCCTTCAGAATCAGAAGTCGATTCTCCGCctc
aaaaaaacacaaaaaaacgtCAATCTCTGAGGAAATCACCTAGAAAACAA
CCTCCAGTAATAGATGATGAAGATTCTGACATCATCCCATCCAAATCTCG
AAGATCCACTAATAGGACGCTTAGATCAGGGATGGAATGCATAGAGGATA
GTCCACAGAGTTCACCCAATTCCGCTGCAGATTCGGCTTCGCCAAAGCTA
TTTTCACCAGCTGATCCAGAATCCCCTGGAAGTCAAAATTCGTCAGTATC
GTCCTTTGATGAGTCAAGATTAAGGAATGAAACCTCTAACCATGCTGAAT
CGATTCACTTTGATTTCACGCCAATTATGAACGTTGACAAGCTTCCTACA
ACGAATGTCGAAAAACAACCTCCAAATACTGTTCCTTATGGCCATGGTGC
ACCAATTGAAGCTTGTAAGATAAAAGATCACTTATCCATTTATTATAACG
AACGTGGCATATGTGATGAATTCGCCAAGAGAGAAAACCTACAAATTCca
caaatgaaaatattatggAATAGCTACCTTGAGTTTATGACCATCAAAAT
AATAGGCTGCGATACCGGGCTCGATGGACTGATACGATACTCAACTTGCA
CTGAAATGCATAAACTATGGCACGCACATGTTTTGAACACACATAATTAC
AGAACATTCATGGCATTAATCAATAACATTAATCCTTTAATCGAATATTT
GGACCCTTCTATTGAGCACGCCAATTCTACTGAAGAAACCAAGAAGAGAC
AAATCCAGAATACGAAAGAAGCTTACAGGAAACTATTCAAGAAAGAATGT
CCGTGGTTGTCTTCCACACAAGAGGATGATGAAATTCCAACAATAGAAGT
ATCGGTACCCAATACACCAAACACTACAAATGATCGACCAAGTACAATAG
ATAAAAACTCCAATAGTAATACATCTAATAAATTAACACACAATGCTCAT
TCAAAATCATCAAGATCAGCTAATGACCCTTTAATATCCACCAATAATGG
CACTCTTACAAAGACAACTAAATCTGTTTCAAAATCATCTAAATCAACCT
CTGCTGATAATGTAAACTATGCATCTACATCTAATAACAAATCACGTAAA
CGTAAACAAAATAATCAAATCGAGTCCTTGACCGTCAACATAAAGACACA
CTCCACTGGCAAACTCacgttttttgaaagatttacaATAACGCCATCAA
TAACAGTTCTAAAGTTAAAAGAAATGCTTGCGCAAAGGCAGGATGTCCCT
ACTGAGTCCTCTCTTCTATGTTTTAGCGGCAAGCATCTTGAAAATCATAA
ATCATTATCAGAATATGAAATAACAGATTTGTGTACTATCCATTACGTCG
AATCACGCGCCAGTCGACGGAATAAGAAATAGTTGTCCACAAGTTTGGAG
CAGCATTGTTTTGAGATAGTGCGTCCTTTTTGTGCAAGTTGAG
Run BLAST on NCBI

transcript from alignment at scaffold_36:1195588..1198235+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061624 ID=TCONS_00061624|Name=TCONS_00061624|organism=Clytia hemisphaerica|type=transcript|length=2648bp|location=Sequence derived from alignment at scaffold_36:1195588..1198235+ (Clytia hemisphaerica)
aaaacaataggcctattgtttagaacaatagaaaaataagaataatgctc
accctcaaccaaagtacactattcttataaaagaaaaagcgtgtatatta
tttgttattatcattattactaATAAGGTTCTCTGAAGAAGAAATCTTTC
CAAATGATTTACTtaataaaatagaaattcaaaggggaaaaatgaaaaca
aaaaagcaacTGAATACACAGAGTGGGAGACTTAACAACAAAAGAACAAC
AGCCAACACGAAACCTCCGCAACAATCAAAATATAGTTTCCGGGAACGTG
CGATTGTTATTGAATCATCCACAGAAAACGAATCGAGTGATGGTGAAACT
GTAGACTCAGAAATCGAGAGTAACAAAAAACACAGTGGAGAAAACGAAAA
AAACCCACAAATCTCAGGTGATGAGACTGAGAGTCTTTCAGAATCAGATG
TTGAGTCTCTGCCTCACAAGTCAACAAAAACACGTCAATCTCCAAGGAAA
TCACCTAGAAAACAACCTCCAGTAATAGATGACGACAACCCACAAACTTC
AGGTGATGAGACTGAGAGTCCTTCAGAATCAGAAGTCGATTCTCCGCctc
aaaaaaacacaaaaaaacgtCAATCTCTGAGGAAATCACCTAGAAAACAA
CCTCCAGTAATAGATGATGAAGATTCTGACATCATCCCATCCAAATCTCG
AAGATCCACTAATAGGACGCTTAGATCAGGGATGGAATGCATAGAGGATA
GTCCACAGAGTTCACCCAATTCCGCTGCAGATTCGGCTTCGCCAAAGCTA
TTTTCACCAGCTGATCCAGAATCCCCTGGAAGTCAAAATTCGTCAGTATC
GTCCTTTGATGAGTCAAGATTAAGGAATGAAACCTCTAACCATGCTGAGT
AAGCATTGTGTTTCTCTCTCTAAACCAATTAAAGAGTCTGGTCTTTCAAA
AGTTAAtagtgttttgattttcttttgtcatttattGTTGGGATCTACCA
TCACTAGGATGATTTTGGTTGTGGCGTTTTATATGcctgaaaaatagttt
gatatgatatgattgatttcttttttctatcttTGTACAATCAGATCGAT
TCACTTTGATTTCACGCCAATTATGAACGTTGACAAGCTTCCTACAACGA
ATGTCGAAAAACAACCTCCAAATACTGTTCCTTATGGCCATGGTAACTAT
CATACGAATTTAGATTGGTATTCGTTtaacaatttgaaaatttttgggaA
TGACTGAATGTGAATGTTTTTGGATGGTGCTTGGAATAAACTCACATCAC
TTTTTTTCAGATATAATATCAATCAAAAGTTTTGAGTCCGACAAGCtcaa
tttaaaatttccatCATAATTTTCCCTACACTCCAGGTGCACCAATTGAA
GCTTGTAAGATAAAAGATCACTTATCCATTTATTATAACGAACGTGGCAT
ATGTGATGAATTCGCCAAGAGAGAAAACCTACAAATTCcacaaatgaaaa
tattatggAATAGCTACCTTGAGTTTATGACCATCAAAATAATAGGCTGC
GATACCGGGCTCGATGGACTGATACGATACTCAACTTGCACTGAAATGCA
TAAACTATGGCACGCACATGTTTTGAACACACATAATTACAGAACATTCA
TGGCATTAATCAATAACATTAATCCTTTAATCGAATATTTGGACCCTTCT
ATTGAGCACGCCAATTCTACTGAAGAAACCAAGAAGAGACAAATCCAGAA
TACGAAAGAAGCTTACAGGTATTGAGTCATTTTGTTCGCAATTTTTGCAG
GTTTTGTTAAGTCCGGGATTGTTTTTTTATCTGCTTTTACTCTTTTCATT
TCCATTGGACGAAAATTACTCAATAATTTCCCTGTTAAGCTGGCTGGAAT
GTGTCATGTTTAAGTAGCTTATACTATGTCCTTCTGAGTTTATGACACCA
AACACATTTATATATCCATGTTTTGTTCATCAGGAAACTATTCAAGAAAG
AATGTCCGTGGTTGTCTTCCACACAAGAGGATGATGAAATTCCAACAATA
GAAGTATCGGTACCCAATACACCAAACACTACAAATGATCGACCAAGTAC
AATAGATAAAAACTCCAATAGTAATACATCTAATAAATTAACACACAATG
CTCATTCAAAATCATCAAGATCAGCTAATGACCCTTTAATATCCACCAAT
AATGGCACTCTTACAAAGACAACTAAATCTGTTTCAAAATCATCTAAATC
AACCTCTGCTGATAATGTAAACTATGCATCTACATCTAATAACAAATCAC
GTAAACGTAAACAAAATAATCAAATCGAGTCCTTGACCGTCAACATAAAG
ACACACTCCACTGGCAAACTCacgttttttgaaagatttacaATAACGCC
ATCAATAACAGTTCTAAAGTTAAAAGAAATGCTTGCGCAAAGGCAGGATG
TCCCTACTGAGTCCTCTCTTCTATGTTTTAGCGGCAAGCATCTTGAAAAT
CATAAATCATTATCAGAATATGAAATAACAGATTTGTGTACTATCCATTA
CGTCGAATCACGCGCCAGTCGACGGAATAAGAAATAGTTGTCCACAAGTT
TGGAGCAGCATTGTTTTGAGATAGTGCGTCCTTTTTGTGCAAGTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038653XLOC_038653Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061624-exon-scaffold_36-1491911889:1195588..1196485TCONS_00061624-exon-scaffold_36-1491911889:1195588..1196485Clytia hemisphaericaexon
TCONS_00061624-exon-scaffold_36-1510915933:1195588..1196485TCONS_00061624-exon-scaffold_36-1510915933:1195588..1196485Clytia hemisphaericaexon
TCONS_00061624-exon-scaffold_36-1575043694:1195588..1196485TCONS_00061624-exon-scaffold_36-1575043694:1195588..1196485Clytia hemisphaericaexon
TCONS_00061624-exon-scaffold_36-1491911889:1196682..1196779TCONS_00061624-exon-scaffold_36-1491911889:1196682..1196779Clytia hemisphaericaexon
TCONS_00061624-exon-scaffold_36-1510915933:1196682..1196779TCONS_00061624-exon-scaffold_36-1510915933:1196682..1196779Clytia hemisphaericaexon
TCONS_00061624-exon-scaffold_36-1575043694:1196682..1196779TCONS_00061624-exon-scaffold_36-1575043694:1196682..1196779Clytia hemisphaericaexon
TCONS_00061624-exon-scaffold_36-1491911889:1196974..1197355TCONS_00061624-exon-scaffold_36-1491911889:1196974..1197355Clytia hemisphaericaexon
TCONS_00061624-exon-scaffold_36-1510915933:1196974..1197355TCONS_00061624-exon-scaffold_36-1510915933:1196974..1197355Clytia hemisphaericaexon
TCONS_00061624-exon-scaffold_36-1575043694:1196974..1197355TCONS_00061624-exon-scaffold_36-1575043694:1196974..1197355Clytia hemisphaericaexon
TCONS_00061624-exon-scaffold_36-1491911889:1197571..1198235TCONS_00061624-exon-scaffold_36-1491911889:1197571..1198235Clytia hemisphaericaexon
TCONS_00061624-exon-scaffold_36-1510915933:1197571..1198235TCONS_00061624-exon-scaffold_36-1510915933:1197571..1198235Clytia hemisphaericaexon
TCONS_00061624-exon-scaffold_36-1575043694:1197571..1198235TCONS_00061624-exon-scaffold_36-1575043694:1197571..1198235Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:1195588..1198235 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.456912	0.549315	0.537403	0.250289	7.62719	5.31333	3.6467	4.48231	1.60974	1.27697	2.22662	1.48163	2.50153	2.1941	1.52649	1.07988	1.61849	1.97846	1.26093	0.569237	1.08788	1.30384	1.04582	1.16347	2.71778	3.90079	0.315023	0.373423	1.21368	1.06208
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00061624 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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