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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061622 ID=TCONS_00061622|Name=TCONS_00061622|organism=Clytia hemisphaerica|type=transcript|length=890bp
ATATGGGTCCGAAACATTTTTgaattgaaagtttcattgaattATAAATT
GTCCCACATCGAATAGTGCTAgtgaccaatgaagtataagcccgaaaggc
tagaatcgaatctttaaactttctcaggcaagaaaaagtgaagtcttaaa
aaatgcgccgtatttttgacgacagattgaacctagcaattcctttgttt
tcgagtgatatcttttaggtgtaaattttagtttcaatctgccaTTTGCG
TATACTTCATTGCTAGTGACTTTTCTAAAGACTTCgttcaaagatggcgg
atataacTCAGTCCAGGGTTTCTAAAGGTCAGTAGTGATACACCAGCTGG
GTGAAATGGATTTGGAAAGGAGAAGCATCGGAAtggaaaatttatcaaaa
tagtTTCCAAAAGAGGCAAAAAGGCAATTGCAGTTAAACGAAAACTTTCA
GTTTGGCGTTTTATTATTTCTTGTCGATATTTAGTTTTAGCTTGATGATT
GAgattgaaattgaattttgtATTTCAATCTGACACAAACATTCTTCTTT
AGTCTTGCTAGatagtttataaaaaataaaattatgaataataaatagaa
taaaaaaatatcactcaACCGTAAATAATAATATCAAGAATTCTTAGCAA
AAAAATAAAGGTCTCACACTCCCcatattcaaaaaatatttaaaaaatat
cacaCACTATAAATACTTGAATGAACACTCTATTTACAAAATTATCAGTT
TACCCGTACATAAAAAATACATCTTCGAAAAATATGTACAGTATACAAAA
TAGTACGTCCCAGAAGACATAAATAAGCATAATATTAACCTGTACCAAAA
GAATACTataaaatacatggtaattattttcaaaattttt Run BLAST on NCBI transcript from alignment at scaffold_36:1128679..1130346+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061622 ID=TCONS_00061622|Name=TCONS_00061622|organism=Clytia hemisphaerica|type=transcript|length=1668bp|location=Sequence derived from alignment at scaffold_36:1128679..1130346+ (Clytia hemisphaerica)
ATATGGGTCCGAAACATTTTTgaattgaaagtttcattgaattATAAATT
GTCCCACATCGAATAGTGCTAgtgaccaatgaagtataagcccgaaaggc
tagaatcgaatctttaaactttctcaggcaagaaaaagtgaagtcttaaa
aaatgcgccgtatttttgacgacagattgaacctagcaattcctttgttt
tcgagtgatatcttttaggtgtaaattttagtttcaatctgccaTTTGCG
TATACTTCATTGCTAGTGACTTTTCTAAAGACTTCgttcaaagatggcgg
atataacTCAGTCCAGGGTTTCTAAAGGTCAGTAGTGATACACCAGCTGG
GTGAAATGGATTTGGAAAGGAGAAGCATCGGAAtggaaaatttatcaaaa
tagtTTCCAAAAGAGGCAAAAAGGCAATTGCAGTTAAACGAAAACTTTCA
GTTTGGCGTTTTATTATTTCTTGTCGATATTTAGTTTTAGCTTGATGATT
GAgattgaaattgaattttgtATTTCAATCTGACACAAACATTCTTCTTT
AGTCTTGCTAGatagtttataaaaaataaaattatgaataataaatagaa
taaaaaaatatcactcaACCGTAAATAATAATATCAAGAATTCTTAGCAA
AAAAATAAAGGTCTCACACTCCCcatattcaaaaaatatttaaaaaatat
cacaCACTATAAATACTTGAATGAACACTCTATTTACAAAATTATCAGTT
TACCCGTACATAAAAAATACATCTTCGAAAAATATGTACAGTATACAAAA
TAGTACGTCCCAGAAGACATAAATAAGCATAATATTAACCTGTACCAAAA
GAATACTataaaatacatgtttttttttttataagcaagtgtatgcccct
tggtcaggctcgagtatgcttaagctttcaaagcatccagacatagaata
tgcttattatatgcttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGG
CTagcgtatatgcttatgttatgcttaggaaatctgcaaatctgagcctt
catatgcttataagcgttatgcttataaaaaaaaaaacatgtatagggta
attattttcaaaattttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061622-exon-scaffold_36-1491911889:1128679..1129546 | TCONS_00061622-exon-scaffold_36-1491911889:1128679..1129546 | Clytia hemisphaerica | exon |
| TCONS_00061622-exon-scaffold_36-1510915933:1128679..1129546 | TCONS_00061622-exon-scaffold_36-1510915933:1128679..1129546 | Clytia hemisphaerica | exon |
| TCONS_00061622-exon-scaffold_36-1575043694:1128679..1129546 | TCONS_00061622-exon-scaffold_36-1575043694:1128679..1129546 | Clytia hemisphaerica | exon |
| TCONS_00061622-exon-scaffold_36-1491911889:1130325..1130346 | TCONS_00061622-exon-scaffold_36-1491911889:1130325..1130346 | Clytia hemisphaerica | exon |
| TCONS_00061622-exon-scaffold_36-1510915933:1130325..1130346 | TCONS_00061622-exon-scaffold_36-1510915933:1130325..1130346 | Clytia hemisphaerica | exon |
| TCONS_00061622-exon-scaffold_36-1575043694:1130325..1130346 | TCONS_00061622-exon-scaffold_36-1575043694:1130325..1130346 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:1128679..1130346 + |
Blast
The following BLAST results are available for this feature:
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