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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061621 ID=TCONS_00061621|Name=TCONS_00061621|organism=Clytia hemisphaerica|type=transcript|length=1028bp
TTTTAGGAAGAACAAATAAAATTCACTTTGATATACAGACTTTCTCAATT
TGATGATGTAACACTGATCACTTTCGGCGAAGATATCGGCATTcattaaa
gcaaaaaaatttcgtTAATAATAACAGATATCTATTCCAAAACAGAAGAA
AATGACAGCAGACAGCAACCACCAAGATGTAGCCATCCTCCACCTAGAGG
GAGTCAGCAACAGCCAGTCAGGAGCCACACCAGCTTCTACAACCGATATC
CAGCCATCCTCAAACATACAAGCCACTGCCACCAGAACGATTGCAGTATT
TAAACCACCATTCCATACCAAATTGGTCAACCAGAAATCCCTCCGTGTTA
AAGTCTATTCAATTCTTTTCTTGATTGCACTTATCGTTATAATGACGGGC
GTATTTCTGGGCGTCACCACAAAAGAATATTTCATTATAACTGCTATGGT
TCCCATTGGAGTTCTCATCATTGTAGCAAattgtttttgtatttatggTT
ATGAATTCTATCTAAATGAGATAAATGAGAGAATGTTATGTAGACTATGG
AGACCGAAAAAGGTACCCCTTTATCGAGTGGCGGTTATCAATGGTGGGCA
AGGGCGTGGTGATCAACCACCCAAATATGAAGATATAATGCTAGAATATG
ATGATGGGTATGAGATAGCATGTGCAATGTTAGAGCAGCCACCACGCTAT
GAAGAAGTGTATGAAATTTCACCCATTTAAAAGGTGAACATTTTACGTGA
AGGAGAGAAGACAGTGTTCAACATTGTACGCTATAATGCCCATCGTGCAT
CAAGGGGAGACAGAAAAGTCTTTTTAGTTCATATCTATGAAACGGATTTT
TTTGGTCGTACTAAATATAATGCAGTAAAACGTTCCATCAAAAAACCTAA
CGAATTTTCAAAAGCAAATTGAGAAAGGAACATCAAGACAACGGCCATCT
AGCGTCTCTAGAACGTAAAATGGACGTTGAATCAATGTAATACACACTGA
CCTTTAAAAACACTGGATACAGTTTCTC Run BLAST on NCBI protein sequence of TCONS_00061621-protein >TCONS_00061621-protein ID=TCONS_00061621-protein|Name=TCONS_00061621-protein|organism=Clytia hemisphaerica|type=polypeptide|length=192bp
MTADSNHQDVAILHLEGVSNSQSGATPASTTDIQPSSNIQATATRTIAVF
KPPFHTKLVNQKSLRVKVYSILFLIALIVIMTGVFLGVTTKEYFIITAMV
PIGVLIIVANCFCIYGYEFYLNEINERMLCRLWRPKKVPLYRVAVINGGQ
GRGDQPPKYEDIMLEYDDGYEIACAMLEQPPRYEEVYEISPI Run BLAST on NCBI transcript from alignment at scaffold_36:1124355..1128616+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061621 ID=TCONS_00061621|Name=TCONS_00061621|organism=Clytia hemisphaerica|type=transcript|length=4262bp|location=Sequence derived from alignment at scaffold_36:1124355..1128616+ (Clytia hemisphaerica)
TTTTAGGAAGAACAAATAAAATTCACTTTGATATACAGACTTTCTCAATT
TGATGATGTAACACTGATCACTTTCGGCGAAGATATCGGCATTcattaaa
gcaaaaaaatttcgtTAATAATAACAGGTAAAGCTATTTTTATTACAGGC
TCCACAACCCAAACACGGGGTGCGAGTTTATAAAGAGCACCAGAGAGCAC
TGGTCTCTTTAAACCCTGGAGTTAGGTATATACACCATCTTTGATCtaga
tttctttttgaaattggtacccgcaaagaagccatcacaaatgaaatgca
ctgtaagggtgtacttttgatagagtgcactacaagggtTTTCTTTTAGC
Nagagacttttgaggaacgagaaaaggtacccttatggctcgcacatacc
cggcacccattttgcctaagtccccccccccgggctttgggggggactta
aaactcaggggggacctaatttttgcctgggacctaaacctgCGACTGTT
AAATTGCTGACAGTAAAAATCAAAtgtgtttttaaagttttgaaccGTAC
acgttttgatttgttttgcacattgtgtcgacatctcaggctcattttcg
TGTGGCCCCAGCTAAATAAGAcatgaaatcaaactacactgtaagggtca
aatGCATTATAAGGGTGCCTTTTCGCTGATCAAGGACTGCACTGTAaaaa
gggtccgattttgaaagccaactCTTTTAGGGacacatgccgtcgtttag
aaatcgaatGCCCCCCTCCCCGGGCCTCAATGGTAAAAATATCAGAGTAC
TGGTGAAATAAGGCCCAgcgtaaaaaaaagaaaacgtaaCTGCGTACTGA
ATTTAGTGTAGTTTGATACTACCAATATTTGAGGGGGCCTACGGAAAAAT
ACCCTACTTAAATGCTAACCCTCTCTTTAGGAAACCAAAAGGAAAAAACT
ATTGAATGCAAAAGCATGACCAGACTACATCCTCAATTTTTGACAGAATG
GTTCTGTAccaatacttttttttttctcgcaGATTCGCAGGGTATAAAAA
CGAAAacctttcaaaacaaatatttaactgatatggcaaatctcaaaaaa
ttaaaatctaaaaaaaaacttcaaatatTGTTGACTGGCAATCAGATTTG
TTACCTATGGTAACAACAGACCAGCTTCAGAACCACAATAACACAAAACA
AATAATAGCAATTGTCACGCACATTGCGTTAGACATAAGATTTTCACTGA
AGGAATGATTGATTAAACTGAGATATTGAAAAATagcatttcaaataaaa
aaggaaGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNccccccccc
cccctgctggtTGGGGGCGGTACACCCTaagttttttcccaaaaaaggag
ggggctggaagtacaccacttttATGGGGGGACCGATGTACTTGGGgcag
ctaaaatctcatcactgaacgtgggggctaaaataattcagcttaatagt
tggcttcaataTTACCCAAATTgaatgaatctgaaaattttcccTTGCGg
cgcaatatttttatagaaagtgtgcaaaaatatttcatctgaAACCTAGa
actgaacgcaatttacattggaaaacccttttttactggATGAAAAGTGT
CTAGAGTCGaaagtcctgggggctaacaaaaaattcaaagtctttggggg
ggggggacttaaaactcaggggggacctaatttttgcctgggacctaaac
ctgGGACTGTTAAATTGCaggtctgacagtaaaaatcaaatgtgttttta
aagttttgaaccGTACacgttttgatttgttttgcatatGCTAACCCTCT
CTTTAGGAAACCAAAAGGAAAAAACTATTAAATGTAAAAGCATGACCAGT
CTACATGCTCAATTTTAACAGAATGGTTCTGTACCAATACTTGAGATTCG
CATGGTATAAAAACGAAAACCTTTCAAGACAAATATTTAACTGATATGGc
aaatctcaaaaaatcaaaatctaaaaaaaaaacttcaaatatTGTTGACT
GGCAATCAGATTTGTTACCTATGGTAACAACAGACCAGCTTCAGAACCAC
AATAACACAAAACAAATAATAGCAATTGTCACGCACATTGCGTTAGACAT
AAGATTTTCACTGAAGGAATGATTGATTAAACTGAGATATTGAAAAATag
catttcaaataaaaaaggaaGCAACTGCACTTACATTGTAGCAAGGTCTA
GCATTGGAGCTTGATACAACAATCAACATCTTTCTCATCTTTCATTTAAG
ATATCTATTCCAAAACAGAAGAAAATGACAGCAGACAGCAACCACCAAGA
TGTAGCCATCCTCCACCTAGAGGGAGTCAGCAACAGCCAGTCAGGAGCCA
CACCAGCTTCTACAACCGATATCCAGCCATCCTCAAACATACAAGCCACT
GCCACCAGAACGATTGCAGTATTTAAACCACCATTCCATACCAAATTGGT
CAACCAGAAATCCCTCCGTGTTAAAGTCTATTCAATTCTTTTCTTGATTG
CACTTATCGTTATAATGACGGGCGTATTTCTGGGCGTCACCACAAAAGAA
TATTTCATTATAACTGCTATGGTTCCCATTGGAGTTCTCATCATTGTAGC
AAattgtttttgtatttatggTTATGAATTCTATCTAAATGAGATAAATG
AGAGAATGTTATGTAGACTATGGAGACCGAAAAAGGTACCCCTTTATCGA
GTGGCGGTTATCAATGGTGGGCAAGGGCGTGGTGATCAACCACCCAAATA
TGAAGATATAATGCTAGAATATGATGATGGGTATGAGATAGGTAGGAAAa
agtttttcatcttttttaaaCCAACATATTTTGGAGTATCAGACTCTCAG
GTATTTTGAAAGCAAAAAGCTTCCCCTTTGATCTGCTTACTCAATTTAGG
GAAACAGTGAGGAACTTATTCGAAATTTAGTTAATCAAGTAGTTTCTAAT
TTCCCTGGAGCTAAATTTGGGCTGAATCCCCCCACCGTTATTTGAAGTTC
ATACCTTGAAAGATCTGTTTATCTCAAAGATTTCCTATTATTACACtgtt
acacccccttctcgcagacccactgggaacctttCCCAATTGAAAAAaca
tcgtccccggtggaaaattatcctcgattttttgtccccattgaaaataa
tcaagtaaaccaatcctcactgcaaaatatgatTCTATTtctcccatccc
cactgaattttctgacttgaaaacaaaagaattgaaatcccaagCCATAA
AAATTATTGGAATATCATTTCCTCATTtaatccccactggctgaaaaaaa
atccaaccgGGTCTGTGGGAAGGGGGGGGTGTACTATTCAAGGAGTTTCC
GGAAGATCTtaattttcttgtaaaaaaaccaCCAAACTTTATTTCTCTAC
AGCATGTGCAATGTTAGAGCAGCCACCACGCTATGAAGAAGTGTATGAAA
TTTCACCCATTTAAAAGGTGAACATTTTACGTGAAGGAGAGAAGACAGTG
TTCAACATTGTACGCTATAATGCCCATCGTGCATCAAGGGGAGACAGAAA
AGTCTTTTTAGTTCATATCTATGAAACGGATTTTTTTGGTCGTACTAAAT
ATAATGCAGTAAAACGTTCCATCAAAAAACCTAACGAATTTTCAAAAGCA
AATTGAGAAAGGAACATCAAGACAACGGCCATCTAGCGTCTCTAGAACGT
AAAATGGACGTTGAATCAATGTAATACACACTGACCTTTAAAAACACTGG
ATACAGTTTCTC Coding sequence (CDS) from alignment at scaffold_36:1124355..1128616+ >TCONS_00061621 ID=TCONS_00061621|Name=TCONS_00061621|organism=Clytia hemisphaerica|type=CDS|length=1158bp|location=Sequence derived from alignment at scaffold_36:1124355..1128616+ (Clytia hemisphaerica)
ATGACAGCAGACAGCAACCACCAAGATGTAGCCATCCTCCACCTAGAGGG
AGTCAGCAACAGCCAGTCAGGAGCCACACCAGCTTCTACAACCGATATCC
AGCCATCCTCAAACATACAAGCCACTGCCACCAGAACGATTGCAGTATTT
AAACCACCATTCCATACCAAATTGGTCAACCAGAAATCCCTCCGTGTTAA
AGTCTATTCAATTCTTTTCTTGATTGCACTTATCGTTATAATGACGGGCG
TATTTCTGGGCGTCACCACAAAAGAATATTTCATTATAACTGCTATGGTT
CCCATTGGAGTTCTCATCATTGTAGCAAattgtttttgtatttatggTTA
TGAATTCTATCTAAATGAGATAAATGAGAGAATGTTATGTAGACTATGGA
GACCGAAAAAGGTACCCCTTTATCGAGTGGCGGTTATCAATGGTGGGCAA
GGGCGTGGTGATCAACCACCCAAATATGAAGATATAATGCTAGAATATGA
TGATGGGTATGAGATAGCATGTGCAATGTTAGAGCAGCCACCACGCTATG
AAGAAGTGTATGAAATTTCACCCATTTAAATGACAGCAGACAGCAACCAC
CAAGATGTAGCCATCCTCCACCTAGAGGGAGTCAGCAACAGCCAGTCAGG
AGCCACACCAGCTTCTACAACCGATATCCAGCCATCCTCAAACATACAAG
CCACTGCCACCAGAACGATTGCAGTATTTAAACCACCATTCCATACCAAA
TTGGTCAACCAGAAATCCCTCCGTGTTAAAGTCTATTCAATTCTTTTCTT
GATTGCACTTATCGTTATAATGACGGGCGTATTTCTGGGCGTCACCACAA
AAGAATATTTCATTATAACTGCTATGGTTCCCATTGGAGTTCTCATCATT
GTAGCAAattgtttttgtatttatggTTATGAATTCTATCTAAATGAGAT
AAATGAGAGAATGTTATGTAGACTATGGAGACCGAAAAAGGTACCCCTTT
ATCGAGTGGCGGTTATCAATGGTGGGCAAGGGCGTGGTGATCAACCACCC
AAATATGAAGATATAATGCTAGAATATGATGATGGGTATGAGATAGCATG
TGCAATGTTAGAGCAGCCACCACGCTATGAAGAAGTGTATGAAATTTCAC
CCATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061621-exon-scaffold_36-1491911889:1124355..1124481 | TCONS_00061621-exon-scaffold_36-1491911889:1124355..1124481 | Clytia hemisphaerica | exon |
| TCONS_00061621-exon-scaffold_36-1510915933:1124355..1124481 | TCONS_00061621-exon-scaffold_36-1510915933:1124355..1124481 | Clytia hemisphaerica | exon |
| TCONS_00061621-exon-scaffold_36-1575043694:1124355..1124481 | TCONS_00061621-exon-scaffold_36-1575043694:1124355..1124481 | Clytia hemisphaerica | exon |
| TCONS_00061621-exon-scaffold_36-1491911889:1127105..1127645 | TCONS_00061621-exon-scaffold_36-1491911889:1127105..1127645 | Clytia hemisphaerica | exon |
| TCONS_00061621-exon-scaffold_36-1510915933:1127105..1127645 | TCONS_00061621-exon-scaffold_36-1510915933:1127105..1127645 | Clytia hemisphaerica | exon |
| TCONS_00061621-exon-scaffold_36-1575043694:1127105..1127645 | TCONS_00061621-exon-scaffold_36-1575043694:1127105..1127645 | Clytia hemisphaerica | exon |
| TCONS_00061621-exon-scaffold_36-1491911889:1128257..1128616 | TCONS_00061621-exon-scaffold_36-1491911889:1128257..1128616 | Clytia hemisphaerica | exon |
| TCONS_00061621-exon-scaffold_36-1510915933:1128257..1128616 | TCONS_00061621-exon-scaffold_36-1510915933:1128257..1128616 | Clytia hemisphaerica | exon |
| TCONS_00061621-exon-scaffold_36-1575043694:1128257..1128616 | TCONS_00061621-exon-scaffold_36-1575043694:1128257..1128616 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:1124355..1128616 + |
Blast
The following BLAST results are available for this feature:
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