TCONS_00061613 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061613
Unique NameTCONS_00061613
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2078

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061613 ID=TCONS_00061613|Name=TCONS_00061613|organism=Clytia hemisphaerica|type=transcript|length=2078bp
AATCTATATTTTATTCTTCTGTAGGTTGTAATTGTCGAACTTATCTTTTT
TAAACCTAATGCTAACATAGGAATAAATTATTATGAGTCAAGAAGAAGAG
GAAAAGGAATGGGTTGAACAGCTTGTTGCAGTTGAACTTGTTGGCATGAT
TGATCCTGATAAGTTGAATATGATTGACAAATCCAATAGCGCAATTTTGG
GCATTTCATCAGATGAATCAACAATTTTAAAGCTTGGAGGATATGCTTTC
AGTGGGAAAAATGAAGATGCAATAGGATCAATTGTTGCTTTTGAGGATGT
CAGCGATGAAGGGGAAGAGCCCAAGTTGAAATATGTTGGACATACAACCA
AAGTGATTAAAGCAAATcggatttttttgaaagagaagaaaaaggaaaac
agCGAAGAAGGGGATGTAAATGGCCAAGATCAAGAgaatgatgaaaatga
agaatagCTAAAGACAATCTTAAATATAAACGAAGAAAAGAAGTATGAAC
GGTAAAAAAGTAAATGCTGTTTTGCCAGCTGCTGGTATTGGCACAAGATT
TGGTGCTCAAAAGCCTAAACAGttTACTGAAGTAGATGGAAAGCCTATCA
TTTGTTACACAATAGAAGCATTCCAAAGtttaGTATACCGTGGATAGAAA
AAGTGGTTGTTGTCATTTCTGAAGATTGGATGGAATTTACTCAAGAAATC
ATTGACATCAACAAATATGATAAAGTTAAATTAGTTATTGGCAAAGACAC
AAGACATCGAAGCATAAATGTTGGTGTCAACTCAATAGAGAGTTCTGCAG
ATGATATTGTTATCGTGCATGATGCTGTTAGACCATTCCTTAAAGAAGAT
TTCTTGAAGCAACTTGTAGAGCAAGCTATCATTAACAAGgCAGCAGGAGC
TGTTCGAGCGTTAGTTTCAACGGTCGTCAAATGTGATGTTGATGGATTTA
TGGAAAGCTCTCTTGTTAGatcgCAGTATCGTGAGAGTCATACTCCACAA
GCTTTTCAATTCGAAGTCTTAGAAAACGCCTATAAACAGTGTTCACAAGA
AGATTTTAACCATGGTACAGAGTGTTTGGATTTAGTTCAAAAATATTGTG
GTGTTCGTCCAAAACTTGTCGATGGTCCCGAATATCTTTGGAAGGTAACT
CACCAGAAAGATATCATTTTAATGGAATCGTTTTTACAACgagaAAAGGA
GCATCGATGACTCAAAGGCGGACATTCGATTAGAATTGATTATTAAAtga
attttagtgaaatttcataCATTATGATTGTTTTAAtgaattgaattttt
attttttgttttaaaattttatatattttttgatatttttagcaATATTG
TATTGACCCAATTTTATTTAATATATCGCACGAATACTCATAAAATTGAT
GTGTGTTATTCCTTTATACatatttgaaacattttctgATTTCTCTTTCC
TAGATATATAATACATCCTAAAACATATAAGGTACAAAATTTAGAATGAT
ATATCACTTTTTTACTTCGGATTTATAGAGTTAACGAGTTAAGTGATACA
CATAATTTATTGTATTTGAGCAAAAACTATATATACATTTTGTCTGGAAA
ATAATAGCGGTACAGACGTAAAATCTGTTTTAAATTCGATGATTTCAATG
GCAGTACAGAGAGAAATCTCGCGTGTAGAATAAAATTGTAAATGAGCTAA
CTATGGCTTAGTGTTGCTTTTAGAAAACGTATCTATCATCCATCGTTATT
TTCGCCATCAAATGGAATTTTCCTTCAAGCCACTTCTTGcatgttatatt
gattgttttgTTCAGTTCCGGAACGATTTCCGTTATACGGTAAAAATGGA
ACATACCGGATCCAAGAAGTACGATCTAGATATTTTTGTATATAAGGTAA
ATCGTACGTGGCAGAGTTCTCTTCTGCGGAAGCCTCGTTGTCACGCCATG
CTTCGATACCACGATCTTTTTTCGATCCCGGTAAAATGTTATCTAGAAGA
CATGCAGTGATTCCACCGACCGCCATGTTGGTTCCAAGAAGGACGCCTAT
GATTTGATCGAGTTCTGTTACGCCAGCT
Run BLAST on NCBI

transcript from alignment at scaffold_36:1016210..1026247+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061613 ID=TCONS_00061613|Name=TCONS_00061613|organism=Clytia hemisphaerica|type=transcript|length=10038bp|location=Sequence derived from alignment at scaffold_36:1016210..1026247+ (Clytia hemisphaerica)
AATCTATATTTTATTCTTCTGTAGGTTGTAATTGTCGAACTTATCTTTTT
TAAACCTAATGCTAACATAGGAATAAATTATTATGAGTCAAGAAGAAGAG
GAAAAGGAATGGGTTGAACAGCTTGTTGCAGTTGAACTTGTTGGCATGAT
TGATCCTGATAAGTTGAATATGATTGACAAATCCAATAGCGCAATTTTGG
TATGTATATAGTACCCTCCATTTGGCTTACTTTCATAAAGAAAGGGTAAT
AAATAGAGCCAATCTGCGATATGAACATTTAAAGCTTTGACAACAAAAAA
GTTGTGTCATTGAATTGAGTCGTGATACAATGTTGAATTTTTATTTGGTT
GATAAGAACTTGTAACTTCCCTCCATATTATAGTGTGAAATatgtatttt
taatttcataatAACATTTCGTATTTCATTCTATGACACTTGTAAATCTG
TTTTATACAGTTTTATATTGTATTCCCAGCAATCTTGTAACAAAATGTTT
GAATCAAAGAATaatgttgaattttgatttgataGGGCATTTCATCAGAT
GAATCAACAATTTTAAAGCTTGGAGGATATGCTTTCAGTGGGAAAAATGA
AGATGCAATAGGATCAATTGTTGCTTTTGAGGATGTCAGCGATGAAGGGG
AAGAGCCCAAGTTGAAATATGTTGGACATACAACCAAAGTGATTAAAGCA
AATcggatttttttgaaagagaagaaaaaggaaaacagCGAAGAAGGGGA
TGTAAATGGCCAAGATCAAGAgaatgatgaaaatgaagaatagCTAAAGG
TGTTTTTGAGGGCTAAGATATCTGCTTTGAGACATACATTGTGATAGTTC
AACTTCCTGGTGTACATTTGCAAATTTGACTCTTCAAAAAAGATTATATT
GATCTTTGGTTAATCACCCACAAATACCAAATAATCAGTGTGATTAGGCT
GTAAATCAAGAAATAAACTCATTCCTATAATAAGTTATTATAACTAGTAT
TTTGAACCTGTACGTATATATTATTAGTACCATCGATGGCAAGTTTTATA
ACATTTGAGCATATAGTTATTGCCTGGAATAGTTtacaaaactttagaaa
taaaattattaacaCCATAAAACGAATGAAAATTCTtgaccaaaaatgtt
tttctgacTCAATATTTCAATATATGATATATAACTGTATATTTATgtgt
tcaatttctttttatagACAATCTTAAATATAAACGAAGAAAAGAAGTAT
GAACGGTAAAAAAGTAAATGCTGTTTTGCCAGCTGCTGGTATTGGCACAA
GATTTGGTGCTCAAAAGCCTAAACAGgtaattttgaattgtttttagACA
AAGAAAAATCCCCTTTATACCTAAGGAACACATTTTGGCGGGCATTAAAT
ATCctgaaataaattaattttggtgggaacttattttggcgaatggcgaa
atttttaaattttggcgggaactaattttggcgaatgacagcgtaaattt
gttctattttgccttattttgagcaactttgatgaatttcagggttcttt
aggcaaaaaaataaaaaaataaattttggcgggaactgattttggctaat
ttcgtctaaattcgtctaaattcgccaaatccgccaaaattagttcccgc
caaaattagttcctacCCCGATTGCGATTGCCATTTTCtggctccaggct
tttaggccttactcttggtctataggcactgctatgggcgaccactagtg
acccccaccggcaAATCGCTTTTTTATAGGTTTCTaaggtgtgaaaaagg
gacccttagaTCTCCCACATACCCGGTACCCATTTTGCTTAAGTACCCCC
TCCTCGGgagttaaaatattttcataagaaCTCTCTGCTTtcattttata
aatattttcaactgaCAGTAAATTCAATCTTTCAAAGTTTTGTAAACTGA
GGTTCGAATtatgtatattttttgaataatttgagcCAAACGTGATGATT
ATAAAGatacacttttctttttctagttTACTGAAGTAGATGGAAAGCCT
ATCATTTGTTACACAATAGAAGCATTCCAAAGGTTTggttcaaaacaaaa
tatttttggttgtTTAATTCATTGCGAATCATTCAATCTGCTAATTTTCG
AAGAAGATAAATTGTATCACGGACTTTATTATacaaagtttctcaatccc
ggccaagcaaaatctttgatcggagtttctTTTAAAGCCTCGATGCAATG
CACCACTCACCACCACTATTGAGTGAGTGCACTCAATAGTGCTGCATTGC
ATCGaggcgctagatctacttttcctgggatacttttgatgatgtagcgc
tgtTAAACCTTACTTTTTAATattacaatggcttctttatgGTCAGTGCA
TTGTATCTATCTTTTTATGATGAATcacaaatttttggtttttatcTTCA
TTCGAAGTGCCATCAATATAAAGTTTCAAGTTCAAAAACCTTGGCTTATT
AAGGcttaaaaccaaacaaaaaaaaccttgactaaaagtttcatttcagt
caaaaaatttaatgaagatCAATGCAAAAGGAATTTTATGTATTCacatt
gtttttatttagtttaGTATACCGTGGATAGAAAAAGTGGTTGTTGTCAT
TTCTGAAGATTGGATGGAATTTACTCAAGAAGtattttacttttcatcat
CACAACACCTTTGATCTGAGTCCGAATAacaatagcgagattatgtatct
ggaattctctacggctacgttTAAAGCGGtgagggaaatggcgagtaagg
caagtaatggcgggtgaaagcaagttcgatatttgacgtacggcattatg
tcgactttgcttatacggtgtattggtgtttttcccgtatagagcaaagt
agacaacgacatgtcgcctttggtgacgacccgcatgggcagccccgcaa
ccccgtagccgtagaatatctccaatacataatctcgctaataaACCTTC
CATTTATAGTTCTTGATCTGTCATTGGcgagttttcttttttgaagacaG
GGGAAGGACTTAAGTGATTTGGAAAAATCTGCAGTTTTGACCTGCAAATT
CGAGGGCGGTTAAATTGCTGATTTATCGTCGTGTTCAGTCAGTCAGGTCT
AGGCAAATTAGAACAGACGTTTACGTCCTCGTTGTCAAACTCACACGTAC
AGAAACTCGCTATTACAGTACCCAGTTCCTTTATCTCCAGGCCTGTTTCC
CATCTCGGTTACATTATATTATACTGGTCACGTTACGTAAATGTCACAGT
AACATTAATTTTCGTTGTAACTAATTTTCGTGGAAAACAACTTTCTGAAA
TCAATTTTTGTCTTTTAGATCATTGACATCAACAAATATGATAAAGTTAA
ATTAGTTATTGGCAAAGACACAAGGTAGTAAAACTTGACTCGTTGTCTGT
AAGTGGCTGTCTTTTCGAATTGTGCTCTGAAGTGGAGATTTTTTAGGGAA
AACATACTAAAAGATAAATTTTTCGCAACTTGGATTTTCGTAACTCGAGT
TTTCCAGGCCTCCACTTTGAGGAAATACGTATCataataaatttcaaaag
ctGTCAAAAGTATTTCAAGATTCGACATACATATTTTTCATTAGACATCG
AAGCATAAATGTTGGTGTCAACTCAATAGAGAGTTCTGCAGATGATATTG
TGAGTTTTTCTATAGCTGCCTGTGTTTGAATAATTGaataaggcgaaaat
aaaaaaatgtagtgtttccggaaaccggccgggtgaaaagaatatttttt
ctaacccggccgcagactatgggttcatctattatggttcatcataaaga
aaatcaaaacgaccgttcaagctatcaaacgtcgtttggttagatattcc
tgcttgtaaatcaagttttgttcgttagtagttgatgcattagtattcag
ggcttacttcatactgtttgtacataaaagttatgtttttaaagttctat
ttcaatgatcttaagttatcaaaaatagaaaaaaaaaattttccggccgg
ctgCATGAGAGTNtcttaagttatcaaaaatagaaaaaaaaaatttcccg
gcCGGCTGCATGAGAGTTTTATttcttcacccgcattccggaaacactac
atttttttatttttgccttataATAAGATTTTTCCATATTTACAACCTGG
TCTCGATTTCTGGTGGAATAGAACcagctaccttaaaggaagaaattttg
gcggaaagaaaatttggcggatttggcggatttgactgaaatccgccaaa
ttaagttcctgccaaaatttcttttttccgccatccgccaaattgtctgt
acacaaacccaatatctacggctaatttcaaaattcattgccgtagaact
acgctacgataatcgtgagatacactctggtacagagtatccgccaaatt
aaattcccgccaaattaaatattttgaaaatataatctcttttaaggtgt
ttttgctattttttcgctgttttgacgccatcttaaggttaaatttttaa
gcgaccgccaaattaaattcccgccaaattaaatattttgaaaatataat
ctcttttaaggtgtttttgctattttttcgctgttttgacgccatcttaa
ggttaaatttttaagcgaccgccaaattaaattcccgccaaatttagttt
ttccctccatccgccaaattaaattccctctgaaaaaacttttttggcca
tccgccaaattaaattcccgccaaaatttcttcctttaaggtagaacAAA
TTCATAGGACTCCATTTCCAATAGGAACCACAATGGGAGTGATACAATTT
CTCTATTTCATTACGATAATTAAAGGAGTGATTATAGGGAGGCGGGCCGC
TAGCTGAGGTGGGTGGATTTTCGAACGTTACGTCACAGTTTTTAACGAAT
CAAATGGCTAAGAATAGATCATACCTTGCTTATAAAGAGCCCCTTAATAG
GGTTGCCAGGAGGAAACCAGGTTATTTAGAGCAGGATAAAATGAGACACT
TTTCTTTCCACAACCAAATATTTGTTGAATAAAACTCGAAAAAACGGGGG
AGGGATCCTAACGAGATCCGAAGGGGTTGTGAGTTTGTAAAAATGGAATA
CTTAAGAAATAGGGGgtgtgtttttataagaaatctgAGAGTTACAAATT
CTTCGTTGCCGCCTGAAAAAactatcagtgtagccttagcttaaGAGTCT
TAAAGGTCTTAAAGGTTAATTTCATAGCCAAAAAATATTAACTTCTGGAA
TTGAAATACGGTTTTCTCTTATTAGGTTATCGTGCATGATGCTGTTAGAC
CATTCCTTAAAGAAGATTTCTTGAAGCAACTTGTAGAGCAAGCTATCATT
AACAAGGTTTGCTACAAAATATGTACAAGATGCCCTCTTCTATAAGAACC
AGTAGAATTTTCTAACTGTCAGTTCTTATCAATGATGCtatgagcctcat
tgttcttataatattATTCCTCTAACAAAATACATTTTGTGATTAAAATT
TAGTTTTGAAATTGAACGATCGTCAATTTCgtttaatttcaaaaagtatg
tCTCGCgtatcttcaaattttcaaacaaatttttttcaaatttaaggaGT
GAAATCGACTTTTATAATTAAcgaactttttttatttccaaaaggCAGCA
GGAGCTGTTCGAGCGTTAGTTTCAACGGTCGTCAAATGTGATGTTGATGG
ATTTATGGAAAGCTCTCTTGTTAGGTAACTTATTTTTCATAACATTTTTA
ATTGGTCACTATTGGAAAAGAGGATGTCtcaaaactttctgtttacggCG
TTTTAAAAATAAGCTGTTGTAGTAGAAGATCAGCTCAAACATATAAAAAA
TACAGATATTTGAAGTTTAAAGTTCTGTCAATTGAGTACGATTAagtcaa
atttttattaaaacgtAAGAGATTTCACAGGATTCGAACTTCAAACGACG
ATATCTTTTTGTGTGTTTGAGTACAAGAATTTCATGCTTCATCTGATGAT
AACAATCATTCTCGTTGAATTTAACTTCGTCATCTTTTACCTTAATTTAG
CGTTAAGAGATTTTTACTGTAAGGCGAAAATAAATATATGTTTcatttcc
ggaatgcgggtgaaggaaaaaagttctCATGCGGGcggccggaaaatatt
tttttttgctatttctgATAACTTTATATAACCGAACTTATATATAAATA
TAGTGTAAATTCAGTCAATATGTGTAACTAGCTAACTAACGAAGCTCAAA
GCTCCATTTAGAGGGCAATAACCAAATAACTTTATTGACAGATAGGGCAG
CTAACCCACATATTGGtcgaaatgttgaaaaaaatgtcTGCGGCTGGatg
aggaaaaaaaatttcacccggccgctttccggaaacaagacatatattta
ttttcgcctaatgccagattttttattcataaaaacCAGGCCAACTTTTC
GGCggccccctctcaaaaaagtttcattaTCCTATCTGCACGTACGCAAA
acttttccaaatatttgacatCCCTTCCCccttcatttgttttttttttc
agatcgCAGTATCGTGAGAGTCATACTCCACAAGCTTTTCAATTCGAAGT
CTTAGAAAACGCCTATAAACAGgtacaatttttgttttattagggAATAA
GTGTTATATACACAGAACCAGTTGGACACCCTCTTTTCTGGAAAAGCGCG
CAAAATCGTTCCTGCTGAGAAAAAGTACCCTGAAATCACAAAATCGAAAG
ATACATCATTCGATTTTGTGTCCTTAtccagggtgtcccgaaaaaggTTT
TATGTTAGACTATATCTACGATTAGAGTTGTAATAGGGACCCTGCCCTAA
CAACAGTCACGTCTTTGTATCTCTTGCCTGTGCGACCTCTCCCCCTCATG
TTGAATCGTGTGGTAAAATCTGGCGGTAAACTAAAACTTATAATTCTGTG
GAGCCCATAACtggaacacgcacggggaatttaaatttgttcaagttaac
gaaattttgagttatgtctGAACATTTATATCTgaactgaaatgaaaaaa
gaacgtgttcgagttaaagagtaaactctagtttagacggccgactttct
gccctgcctattctaattttTAGGGTAGGCAgaaagtgggcacaaagttg
gcagttaatatctttgcttgaaaaagattgaaagaagacattgcattgac
gtcaaaagtgggcaatgcattgactttagacagcccactttaagcccact
ttaattcacaataatTAGAATAGGTAGAGCGAAAAgggggccgtctaaac
tagagctaattCGAGTTTAGGTTCGAGTTAAACACGAGTTAAAGATGGtc
aaagagactccactgtatattaAAAGACAACCGCGTGTAACTTTTAACTT
GTTTGAATGCACTTTCAGTTTCTAGttattctctttttctttgttgtcAG
TGTTCACAAGAAGATTTTAACCATGGTACAGAGTGTTTGGATTTAGTTCA
AAAATATTGTGGTGTTCGTCCAAAACTTGTCGATGGTCCCGAATATCTTT
GGAAGGTGTGAtttctttatttatttcttatttacaGCGAGGAAGCTTGA
CAAAATAAGAAGAATTGTCCTATATTCTAATCTAGCGACTCACTCAAATG
AAATATGAGacaaatattttgcaaaaactTTTACACTTAATTTTCGACAA
GAAACTTCTTAGCTTTAGCTTCAAAAAGAAGGGAAATTATTATACGCTAA
GGGAACATTTTTGTCATTATTATGAGTACATGCACAATTAAAGGATGTCA
TTTAACGTATcacctaccatttgcttactcAGCATTTTCAAACCAACCAA
AGAAAGGACAACTTCTCTCCCTGCGCgagttaaaattttgataaattatt
ttgtttattctaCTTTGTCAGTATAGAGGCGCATTGATTAGCACATGAAT
TCATTTGTTATTGTAAtaacccaaaaaaaaaaacactctgagcatgtttt
ttttcattttgttttcagGTAACTCACCAGAAAGATATCATTTTAATGGA
ATCGTTTTTACAACGTGAGTCATTATCacatttctttgatttttacaATC
GCTAAAATAGATTTGGATGAAATACTGCATTGCTTTCAATCGTGACGTTT
TTTGACGACATGGTGCACCTGCATTAGGTGAATGGGGGAGGGGCATGATT
AAACAATAGGAGCTGGTCTGAGGAAATGTTTCAAATTTGATAACCAGGTA
TTTTGTGAAggtgaaaaatcaatttattttgaGCAAATAAGGCACTTTCC
CGCCCCCGGAGGGGTACCAAGGTAAAAGGAGGGTAGGGCTATGTGTCGCC
CCAAACGGTTCGTTTTTTAGATCTTCACAAAATCCCAATAAGGGtcatga
aaatattattttcatgtcttttgtcgttttttgacgttttatcGAATAAT
TCGAAAAGTAAGTGTTTAGAGAAAAAAACGTGGCAAGGTATTTTTCGTCT
ATTATTCTGGATCATGATCatataaaaagttttattaaatTGCCTACTTA
TCACTTTTTGAAGATGACATGGTAATCTTTCTTTTGTCATCTTTTATTCC
TTTgtcaaattgacaaaatttattgttgtcaGCCTTAATCGATAGAGAAT
TTAATAAGCTTTTCAAAATATACTTTTACTATTGAAATATATTTGTATCG
AAAGCTGTTAATAAAAGAGTCAAGTGTGGTGTCGAAGGTTTCCACCTTTC
CATACCTTAAGACCTTATAAGGGTTCTAAAAACAGCTCAAATTCCACATC
GTGACCCTCAAAAGacaaaattttaagtaaaatagTCATAAAATTTACAA
CAATTTGTGTTTTTCCTCGATTTAAGCCCCTCTAAGGGTCTCCGTTTTGA
TGGTCCTTCTAAGGGCCCGGCTGCCAAAAGTCGGTTGGCATGGCACACAC
CCGTCACCccccaaaccccccccccctctgaCTTTTTCTCACtgttgaaa
atatagtaaatagTAAGAAACATCAGGGGGCTGTTCATTAGGCACCACGG
TAAGTGAACGTACgagcaaaaacataaaaagttatctctttttttttcag
gagaAAAGGAGCATCGATGACTCAAAGGCGGACATTCGATTAGAATTGAT
TATTAAAtgaattttagtgaaatttcataCATTATGATTGTTTTAAtgaa
ttgaatttttattttttgttttaaaattttatatattttttgatattttt
agcaATATTGTATTGACCCAATTTTATTTAATATATCGCACGAATACTCA
TAAAATTGATGTGTGTTATTCCTTTATACatatttgaaacattttctgAT
TTCTCTTTCCTAGATATATAATACATCCTAAAACATATAAGGTACAAAAT
TTAGAATGATATATCACTTTTTTACTTCGGATTTATAGAGTTAACGAGTT
AAGTGATACACATAATTTATTGTATTTGAGCAAAAACTATATATACATTT
TGTCTGGAAAATAATAGCGGTACAGACGTAAAATCTGTTTTAAATTCGAT
GATTTCAATGGCAGTACAGAGAGAAATCTCGCGTGTAGAATAAAATTGTA
AATGAGCTAACTATGGCTTAGTGTTGCTTTTAGAAAACGTATCTATCATC
CATCGTTATTTTCGCCATCAAATGGAATTTTCCTTCAAGCCACTTCTTGc
atgttatattgattgttttgTTCAGTTCCGGAACGATTTCCGTTATACGG
TAAAAATGGAACATACCGGATCCAAGAAGTACGATCTAGATATTTTTGTA
TATAAGGTAAATCGTACGTGGCAGAGTTCTCTTCTGCGGAAGCCTCGTTG
TCACGCCATGCTTCGATACCACGATCTTTTTTCGATCCCGGTAAAATGTT
ATCTAGAAGACATGCAGTGATTCCACCGACCGCCATGTTGGTTCCAAGAA
GGACGCCTATGATTTGATCGAGTTCTGTTACGCCAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038647XLOC_038647Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061613-exon-scaffold_36-1491911889:1016210..1016408TCONS_00061613-exon-scaffold_36-1491911889:1016210..1016408Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1510915933:1016210..1016408TCONS_00061613-exon-scaffold_36-1510915933:1016210..1016408Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1575043694:1016210..1016408TCONS_00061613-exon-scaffold_36-1575043694:1016210..1016408Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1491911889:1016745..1017008TCONS_00061613-exon-scaffold_36-1491911889:1016745..1017008Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1510915933:1016745..1017008TCONS_00061613-exon-scaffold_36-1510915933:1016745..1017008Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1575043694:1016745..1017008TCONS_00061613-exon-scaffold_36-1575043694:1016745..1017008Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1491911889:1017427..1017535TCONS_00061613-exon-scaffold_36-1491911889:1017427..1017535Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1510915933:1017427..1017535TCONS_00061613-exon-scaffold_36-1510915933:1017427..1017535Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1575043694:1017427..1017535TCONS_00061613-exon-scaffold_36-1575043694:1017427..1017535Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1491911889:1018236..1018291TCONS_00061613-exon-scaffold_36-1491911889:1018236..1018291Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1510915933:1018236..1018291TCONS_00061613-exon-scaffold_36-1510915933:1018236..1018291Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1575043694:1018236..1018291TCONS_00061613-exon-scaffold_36-1575043694:1018236..1018291Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1491911889:1018822..1018890TCONS_00061613-exon-scaffold_36-1491911889:1018822..1018890Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1510915933:1018822..1018890TCONS_00061613-exon-scaffold_36-1510915933:1018822..1018890Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1575043694:1018822..1018890TCONS_00061613-exon-scaffold_36-1575043694:1018822..1018890Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1491911889:1019578..1019633TCONS_00061613-exon-scaffold_36-1491911889:1019578..1019633Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1510915933:1019578..1019633TCONS_00061613-exon-scaffold_36-1510915933:1019578..1019633Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1575043694:1019578..1019633TCONS_00061613-exon-scaffold_36-1575043694:1019578..1019633Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1491911889:1019854..1019908TCONS_00061613-exon-scaffold_36-1491911889:1019854..1019908Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1510915933:1019854..1019908TCONS_00061613-exon-scaffold_36-1510915933:1019854..1019908Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1575043694:1019854..1019908TCONS_00061613-exon-scaffold_36-1575043694:1019854..1019908Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1491911889:1021535..1021615TCONS_00061613-exon-scaffold_36-1491911889:1021535..1021615Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1510915933:1021535..1021615TCONS_00061613-exon-scaffold_36-1510915933:1021535..1021615Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1575043694:1021535..1021615TCONS_00061613-exon-scaffold_36-1575043694:1021535..1021615Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1491911889:1021904..1021983TCONS_00061613-exon-scaffold_36-1491911889:1021904..1021983Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1510915933:1021904..1021983TCONS_00061613-exon-scaffold_36-1510915933:1021904..1021983Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1575043694:1021904..1021983TCONS_00061613-exon-scaffold_36-1575043694:1021904..1021983Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1491911889:1022812..1022881TCONS_00061613-exon-scaffold_36-1491911889:1022812..1022881Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1510915933:1022812..1022881TCONS_00061613-exon-scaffold_36-1510915933:1022812..1022881Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1575043694:1022812..1022881TCONS_00061613-exon-scaffold_36-1575043694:1022812..1022881Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1491911889:1023710..1023814TCONS_00061613-exon-scaffold_36-1491911889:1023710..1023814Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1510915933:1023710..1023814TCONS_00061613-exon-scaffold_36-1510915933:1023710..1023814Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1575043694:1023710..1023814TCONS_00061613-exon-scaffold_36-1575043694:1023710..1023814Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1491911889:1024278..1024323TCONS_00061613-exon-scaffold_36-1491911889:1024278..1024323Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1510915933:1024278..1024323TCONS_00061613-exon-scaffold_36-1510915933:1024278..1024323Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1575043694:1024278..1024323TCONS_00061613-exon-scaffold_36-1575043694:1024278..1024323Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1491911889:1025360..1026247TCONS_00061613-exon-scaffold_36-1491911889:1025360..1026247Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1510915933:1025360..1026247TCONS_00061613-exon-scaffold_36-1510915933:1025360..1026247Clytia hemisphaericaexon
TCONS_00061613-exon-scaffold_36-1575043694:1025360..1026247TCONS_00061613-exon-scaffold_36-1575043694:1025360..1026247Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:1016210..1026247 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.879138	0.529746	1.00258	0.469359	0.692045	0.695676	0.960505	0.622475	0.801706	1.89459	1.23201	1.20576	1.91032	0.669272	1.0215	0.833487	0.906178	2.41432	1.01029	0.777327	0.164124	0.329195	1.29494	1.98192	0.325259	0.817294	0.146153	0.122945	1.57852	0.999037
Blast
[Close]
BLAST of TCONS_00061613 vs. Swiss-Prot (Human)
Match: ISPD (D-ribitol-5-phosphate cytidylyltransferase OS=Homo sapiens GN=ISPD PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 1.177e-45
Identity = 82/190 (43.16%), Postives = 120/190 (63.16%), Query Frame = 2 
Query:  641 WIEKVVVVISEDWMEFTQEIIDINKYDKVKLVIGKDTRHRSINVGVNSIES-------SADDIVIVHDAVRPFLKEDFLKQLVEQAIINKAAGAVRALVSTVVKCDVDGFMESSLVRSQYRESHTPQAFQFEVLENAYKQCSQEDFNHGTECLDLVQKYCGVRPKLVDGPEYLWKVTHQKDIILMESFLQ 1189
            WI+ +VV ++ + ME  + II   ++ ++ LV    TRHRSI  G+ ++         S  ++VI+HDAVRPF++E  L ++V  A  + AAGA+R LVSTVV    DG ++ SL R+++R S  PQAF F+V+  AY+QCS  D   GTECL L  KYC  + KLV+G   LWKVT+++D+   ES ++
Sbjct:   89 WIKDIVVAVTGENMEVMKSIIQKYQHKRISLVEAGVTRHRSIFNGLKALAEDQINSKLSKPEVVIIHDAVRPFVEEGVLLKVVTAAKEHGAAGAIRPLVSTVVSPSADGCLDYSLERARHRASEMPQAFLFDVIYEAYQQCSDYDLEFGTECLQLALKYCCTKAKLVEGSPDLWKVTYKRDLYAAESIIK 278

HSP 2 Score: 44.2838 bits (103), Expect = 1.177e-45
Identity = 19/43 (44.19%), Postives = 27/43 (62.79%), Query Frame = 3 
Query:  510 VNAVLPAAGIGTRFGAQKPKQFTEVDGKPIICYTIEAFQSLVY 638
            V AVLPA G G R G   PKQF  +  +P+I YT++A + + +
Sbjct:   47 VAAVLPAGGCGERMGVPTPKQFCPILERPLISYTLQALERVCW 89
The following BLAST results are available for this feature:
BLAST of TCONS_00061613 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ISPD1.177e-4543.16D-ribitol-5-phosphate cytidylyltransferase OS=Homo... [more]
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