TCONS_00061610 (transcript) - C. hemisphaerica

Overview
NameTCONS_00061610
Unique NameTCONS_00061610
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2550

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00061610 ID=TCONS_00061610|Name=TCONS_00061610|organism=Clytia hemisphaerica|type=transcript|length=2550bp
AATAGTAATAGATAGTAAAATAGTACGGGACAGTCTATTGAATAATCATT
ACACTCTAATCTATATTTTATTCTTCTGTAGGTTGTAATTGTCGAACTTA
TCTTTTTTAAACCTAATGCTAACATAGGAATAAATTATTATGAGTCAAGA
AGAAGAGGAAAAGGAATGGGTTGAACAGCTTGTTGCAGTTGAACTTGTTG
GCATGATTGATCCTGATAAGTTGAATATGATTGACAAATCCAATAGCGCA
ATTTTGGGCATTTCATCAGATGAATCAACAATTTTAAAGCTTGGAGGATA
TGCTTTCAGTGGGAAAAATGAAGATGCAATAGGATCAATTGTTGCTTTTG
AGGATGTCAGCGATGAAGGGGAAGAGCCCAAGTTGAAATATGTTGGACAT
ACAACCAAAGTGATTAAAGCAAATcggatttttttgaaagagaagaaaaa
ggaaaacagCGAAGAAGGGGATGTAAATGGCCAAGATCAAGAgaatgatg
aaaatgaagaatagCTAAAGGTGTTTTTGAGGGCTAAGATATCTGCTTTG
AGACATACATTGTGATAGTTCAACTTCCTGGTGTACATTTGCAAATTTGA
CTCTTCAAAAAAGATTATATTGATCTTTGGTTAATCACCCACAAATACCA
AATAATCAGTGTGATTAGGCTGTAAATCAAGAAATAAACTCATTCCTATA
ATAAGTTATTATAACTAGTATTTTGAACCTGTACGTATATATTATTAGTA
CCATCGATGGCAAGTTTTATAACATTTGAGCATATAGTTATTGCCTGGAA
TAGTTtacaaaactttagaaataaaattattaacaCCATAAAACGAATGA
AAATTCTtgaccaaaaatgtttttctgacTCAATATTTCAATATATGATA
TATAACTGTATATTTATgtgttcaatttctttttatagACAATCTTAAAT
ATAAACGAAGAAAAGAAGTATGAACGGTAAAAAAGTAAATGCTGTTTTGC
CAGCTGCTGGTATTGGCACAAGATTTGGTGCTCAAAAGCCTAAACAGttT
ACTGAAGTAGATGGAAAGCCTATCATTTGTTACACAATAGAAGCATTCCA
AAGtttaGTATACCGTGGATAGAAAAAGTGGTTGTTGTCATTTCTGAAGA
TTGGATGGAATTTACTCAAGAAATCATTGACATCAACAAATATGATAAAG
TTAAATTAGTTATTGGCAAAGACACAAGACATCGAAGCATAAATGTTGGT
GTCAACTCAATAGAGAGTTCTGCAGATGATATTGTTATCGTGCATGATGC
TGTTAGACCATTCCTTAAAGAAGATTTCTTGAAGCAACTTGTAGAGCAAG
CTATCATTAACAAGgCAGCAGGAGCTGTTCGAGCGTTAGTTTCAACGGTC
GTCAAATGTGATGTTGATGGATTTATGGAAAGCTCTCTTGTTAGatcgCA
GTATCGTGAGAGTCATACTCCACAAGCTTTTCAATTCGAAGTCTTAGAAA
ACGCCTATAAACAGTGTTCACAAGAAGATTTTAACCATGGTACAGAGTGT
TTGGATTTAGTTCAAAAATATTGTGGTGTTCGTCCAAAACTTGTCGATGG
TCCCGAATATCTTTGGAAGGTAACTCACCAGAAAGATATCATTTTAATGG
AATCGTTTTTACAACaAAAGGAGCATCGATGACTCAAAGGCGGACATTCG
ATTAGAATTGATTATTAAAtgaattttagtgaaatttcataCATTATGAT
TGTTTTAAtgaattgaatttttattttttgttttaaaattttatatattt
tttgatatttttagcaATATTGTATTGACCCAATTTTATTTAATATATCG
CACGAATACTCATAAAATTGATGTGTGTTATTCCTTTATACatatttgaa
acattttctgATTTCTCTTTCCTAGATATATAATACATCCTAAAACATAT
AAGGTACAAAATTTAGAATGATATATCACTTTTTTACTTCGGATTTATAG
AGTTAACGAGTTAAGTGATACACATAATTTATTGTATTTGAGCAAAAACT
ATATATACATTTTGTCTGGAAAATAATAGCGGTACAGACGTAAAATCTGT
TTTAAATTCGATGATTTCAATGGCAGTACAGAGAGAAATCTCGCGTGTAG
AATAAAATTGTAAATGAGCTAACTATGGCTTAGTGTTGCTTTTAGAAAAC
GTATCTATCATCCATCGTTATTTTCGCCATCAAATGGAATTTTCCTTCAA
GCCACTTCTTGcatgttatattgattgttttgTTCAGTTCCGGAACGATT
TCCGTTATACGGTAAAAATGGAACATACCGGATCCAAGAAGTACGATCTA
GATATTTTTGTATATAAGGTAAATCGTACGTGGCAGAGTTCTCTTCTGCG
GAAGCCTCGTTGTCACGCCATGCTTCGATACCACGATCTTTTTTCGATCC
CGGTAAAATGTTATCTAGAAGACATGCAGTGATTCCACCGACCGCCATGT
TGGTTCCAAGAAGGACGCCTATGATTTGATCGAGTTCTGTTACGCCAGCT
Run BLAST on NCBI

transcript from alignment at scaffold_36:1016153..1026247+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00061610 ID=TCONS_00061610|Name=TCONS_00061610|organism=Clytia hemisphaerica|type=transcript|length=10095bp|location=Sequence derived from alignment at scaffold_36:1016153..1026247+ (Clytia hemisphaerica)
AATAGTAATAGATAGTAAAATAGTACGGGACAGTCTATTGAATAATCATT
ACACTCTAATCTATATTTTATTCTTCTGTAGGTTGTAATTGTCGAACTTA
TCTTTTTTAAACCTAATGCTAACATAGGAATAAATTATTATGAGTCAAGA
AGAAGAGGAAAAGGAATGGGTTGAACAGCTTGTTGCAGTTGAACTTGTTG
GCATGATTGATCCTGATAAGTTGAATATGATTGACAAATCCAATAGCGCA
ATTTTGGTATGTATATAGTACCCTCCATTTGGCTTACTTTCATAAAGAAA
GGGTAATAAATAGAGCCAATCTGCGATATGAACATTTAAAGCTTTGACAA
CAAAAAAGTTGTGTCATTGAATTGAGTCGTGATACAATGTTGAATTTTTA
TTTGGTTGATAAGAACTTGTAACTTCCCTCCATATTATAGTGTGAAATat
gtatttttaatttcataatAACATTTCGTATTTCATTCTATGACACTTGT
AAATCTGTTTTATACAGTTTTATATTGTATTCCCAGCAATCTTGTAACAA
AATGTTTGAATCAAAGAATaatgttgaattttgatttgataGGGCATTTC
ATCAGATGAATCAACAATTTTAAAGCTTGGAGGATATGCTTTCAGTGGGA
AAAATGAAGATGCAATAGGATCAATTGTTGCTTTTGAGGATGTCAGCGAT
GAAGGGGAAGAGCCCAAGTTGAAATATGTTGGACATACAACCAAAGTGAT
TAAAGCAAATcggatttttttgaaagagaagaaaaaggaaaacagCGAAG
AAGGGGATGTAAATGGCCAAGATCAAGAgaatgatgaaaatgaagaatag
CTAAAGGTGTTTTTGAGGGCTAAGATATCTGCTTTGAGACATACATTGTG
ATAGTTCAACTTCCTGGTGTACATTTGCAAATTTGACTCTTCAAAAAAGA
TTATATTGATCTTTGGTTAATCACCCACAAATACCAAATAATCAGTGTGA
TTAGGCTGTAAATCAAGAAATAAACTCATTCCTATAATAAGTTATTATAA
CTAGTATTTTGAACCTGTACGTATATATTATTAGTACCATCGATGGCAAG
TTTTATAACATTTGAGCATATAGTTATTGCCTGGAATAGTTtacaaaact
ttagaaataaaattattaacaCCATAAAACGAATGAAAATTCTtgaccaa
aaatgtttttctgacTCAATATTTCAATATATGATATATAACTGTATATT
TATgtgttcaatttctttttatagACAATCTTAAATATAAACGAAGAAAA
GAAGTATGAACGGTAAAAAAGTAAATGCTGTTTTGCCAGCTGCTGGTATT
GGCACAAGATTTGGTGCTCAAAAGCCTAAACAGgtaattttgaattgttt
ttagACAAAGAAAAATCCCCTTTATACCTAAGGAACACATTTTGGCGGGC
ATTAAATATCctgaaataaattaattttggtgggaacttattttggcgaa
tggcgaaatttttaaattttggcgggaactaattttggcgaatgacagcg
taaatttgttctattttgccttattttgagcaactttgatgaatttcagg
gttctttaggcaaaaaaataaaaaaataaattttggcgggaactgatttt
ggctaatttcgtctaaattcgtctaaattcgccaaatccgccaaaattag
ttcccgccaaaattagttcctacCCCGATTGCGATTGCCATTTTCtggct
ccaggcttttaggccttactcttggtctataggcactgctatgggcgacc
actagtgacccccaccggcaAATCGCTTTTTTATAGGTTTCTaaggtgtg
aaaaagggacccttagaTCTCCCACATACCCGGTACCCATTTTGCTTAAG
TACCCCCTCCTCGGgagttaaaatattttcataagaaCTCTCTGCTTtca
ttttataaatattttcaactgaCAGTAAATTCAATCTTTCAAAGTTTTGT
AAACTGAGGTTCGAATtatgtatattttttgaataatttgagcCAAACGT
GATGATTATAAAGatacacttttctttttctagttTACTGAAGTAGATGG
AAAGCCTATCATTTGTTACACAATAGAAGCATTCCAAAGGTTTggttcaa
aacaaaatatttttggttgtTTAATTCATTGCGAATCATTCAATCTGCTA
ATTTTCGAAGAAGATAAATTGTATCACGGACTTTATTATacaaagtttct
caatcccggccaagcaaaatctttgatcggagtttctTTTAAAGCCTCGA
TGCAATGCACCACTCACCACCACTATTGAGTGAGTGCACTCAATAGTGCT
GCATTGCATCGaggcgctagatctacttttcctgggatacttttgatgat
gtagcgctgtTAAACCTTACTTTTTAATattacaatggcttctttatgGT
CAGTGCATTGTATCTATCTTTTTATGATGAATcacaaatttttggttttt
atcTTCATTCGAAGTGCCATCAATATAAAGTTTCAAGTTCAAAAACCTTG
GCTTATTAAGGcttaaaaccaaacaaaaaaaaccttgactaaaagtttca
tttcagtcaaaaaatttaatgaagatCAATGCAAAAGGAATTTTATGTAT
TCacattgtttttatttagtttaGTATACCGTGGATAGAAAAAGTGGTTG
TTGTCATTTCTGAAGATTGGATGGAATTTACTCAAGAAGtattttacttt
tcatcatCACAACACCTTTGATCTGAGTCCGAATAacaatagcgagatta
tgtatctggaattctctacggctacgttTAAAGCGGtgagggaaatggcg
agtaaggcaagtaatggcgggtgaaagcaagttcgatatttgacgtacgg
cattatgtcgactttgcttatacggtgtattggtgtttttcccgtataga
gcaaagtagacaacgacatgtcgcctttggtgacgacccgcatgggcagc
cccgcaaccccgtagccgtagaatatctccaatacataatctcgctaata
aACCTTCCATTTATAGTTCTTGATCTGTCATTGGcgagttttcttttttg
aagacaGGGGAAGGACTTAAGTGATTTGGAAAAATCTGCAGTTTTGACCT
GCAAATTCGAGGGCGGTTAAATTGCTGATTTATCGTCGTGTTCAGTCAGT
CAGGTCTAGGCAAATTAGAACAGACGTTTACGTCCTCGTTGTCAAACTCA
CACGTACAGAAACTCGCTATTACAGTACCCAGTTCCTTTATCTCCAGGCC
TGTTTCCCATCTCGGTTACATTATATTATACTGGTCACGTTACGTAAATG
TCACAGTAACATTAATTTTCGTTGTAACTAATTTTCGTGGAAAACAACTT
TCTGAAATCAATTTTTGTCTTTTAGATCATTGACATCAACAAATATGATA
AAGTTAAATTAGTTATTGGCAAAGACACAAGGTAGTAAAACTTGACTCGT
TGTCTGTAAGTGGCTGTCTTTTCGAATTGTGCTCTGAAGTGGAGATTTTT
TAGGGAAAACATACTAAAAGATAAATTTTTCGCAACTTGGATTTTCGTAA
CTCGAGTTTTCCAGGCCTCCACTTTGAGGAAATACGTATCataataaatt
tcaaaagctGTCAAAAGTATTTCAAGATTCGACATACATATTTTTCATTA
GACATCGAAGCATAAATGTTGGTGTCAACTCAATAGAGAGTTCTGCAGAT
GATATTGTGAGTTTTTCTATAGCTGCCTGTGTTTGAATAATTGaataagg
cgaaaataaaaaaatgtagtgtttccggaaaccggccgggtgaaaagaat
attttttctaacccggccgcagactatgggttcatctattatggttcatc
ataaagaaaatcaaaacgaccgttcaagctatcaaacgtcgtttggttag
atattcctgcttgtaaatcaagttttgttcgttagtagttgatgcattag
tattcagggcttacttcatactgtttgtacataaaagttatgtttttaaa
gttctatttcaatgatcttaagttatcaaaaatagaaaaaaaaaattttc
cggccggctgCATGAGAGTNtcttaagttatcaaaaatagaaaaaaaaaa
tttcccggcCGGCTGCATGAGAGTTTTATttcttcacccgcattccggaa
acactacatttttttatttttgccttataATAAGATTTTTCCATATTTAC
AACCTGGTCTCGATTTCTGGTGGAATAGAACcagctaccttaaaggaaga
aattttggcggaaagaaaatttggcggatttggcggatttgactgaaatc
cgccaaattaagttcctgccaaaatttcttttttccgccatccgccaaat
tgtctgtacacaaacccaatatctacggctaatttcaaaattcattgccg
tagaactacgctacgataatcgtgagatacactctggtacagagtatccg
ccaaattaaattcccgccaaattaaatattttgaaaatataatctctttt
aaggtgtttttgctattttttcgctgttttgacgccatcttaaggttaaa
tttttaagcgaccgccaaattaaattcccgccaaattaaatattttgaaa
atataatctcttttaaggtgtttttgctattttttcgctgttttgacgcc
atcttaaggttaaatttttaagcgaccgccaaattaaattcccgccaaat
ttagtttttccctccatccgccaaattaaattccctctgaaaaaactttt
ttggccatccgccaaattaaattcccgccaaaatttcttcctttaaggta
gaacAAATTCATAGGACTCCATTTCCAATAGGAACCACAATGGGAGTGAT
ACAATTTCTCTATTTCATTACGATAATTAAAGGAGTGATTATAGGGAGGC
GGGCCGCTAGCTGAGGTGGGTGGATTTTCGAACGTTACGTCACAGTTTTT
AACGAATCAAATGGCTAAGAATAGATCATACCTTGCTTATAAAGAGCCCC
TTAATAGGGTTGCCAGGAGGAAACCAGGTTATTTAGAGCAGGATAAAATG
AGACACTTTTCTTTCCACAACCAAATATTTGTTGAATAAAACTCGAAAAA
ACGGGGGAGGGATCCTAACGAGATCCGAAGGGGTTGTGAGTTTGTAAAAA
TGGAATACTTAAGAAATAGGGGgtgtgtttttataagaaatctgAGAGTT
ACAAATTCTTCGTTGCCGCCTGAAAAAactatcagtgtagccttagctta
aGAGTCTTAAAGGTCTTAAAGGTTAATTTCATAGCCAAAAAATATTAACT
TCTGGAATTGAAATACGGTTTTCTCTTATTAGGTTATCGTGCATGATGCT
GTTAGACCATTCCTTAAAGAAGATTTCTTGAAGCAACTTGTAGAGCAAGC
TATCATTAACAAGGTTTGCTACAAAATATGTACAAGATGCCCTCTTCTAT
AAGAACCAGTAGAATTTTCTAACTGTCAGTTCTTATCAATGATGCtatga
gcctcattgttcttataatattATTCCTCTAACAAAATACATTTTGTGAT
TAAAATTTAGTTTTGAAATTGAACGATCGTCAATTTCgtttaatttcaaa
aagtatgtCTCGCgtatcttcaaattttcaaacaaatttttttcaaattt
aaggaGTGAAATCGACTTTTATAATTAAcgaactttttttatttccaaaa
ggCAGCAGGAGCTGTTCGAGCGTTAGTTTCAACGGTCGTCAAATGTGATG
TTGATGGATTTATGGAAAGCTCTCTTGTTAGGTAACTTATTTTTCATAAC
ATTTTTAATTGGTCACTATTGGAAAAGAGGATGTCtcaaaactttctgtt
tacggCGTTTTAAAAATAAGCTGTTGTAGTAGAAGATCAGCTCAAACATA
TAAAAAATACAGATATTTGAAGTTTAAAGTTCTGTCAATTGAGTACGATT
AagtcaaatttttattaaaacgtAAGAGATTTCACAGGATTCGAACTTCA
AACGACGATATCTTTTTGTGTGTTTGAGTACAAGAATTTCATGCTTCATC
TGATGATAACAATCATTCTCGTTGAATTTAACTTCGTCATCTTTTACCTT
AATTTAGCGTTAAGAGATTTTTACTGTAAGGCGAAAATAAATATATGTTT
catttccggaatgcgggtgaaggaaaaaagttctCATGCGGGcggccgga
aaatatttttttttgctatttctgATAACTTTATATAACCGAACTTATAT
ATAAATATAGTGTAAATTCAGTCAATATGTGTAACTAGCTAACTAACGAA
GCTCAAAGCTCCATTTAGAGGGCAATAACCAAATAACTTTATTGACAGAT
AGGGCAGCTAACCCACATATTGGtcgaaatgttgaaaaaaatgtcTGCGG
CTGGatgaggaaaaaaaatttcacccggccgctttccggaaacaagacat
atatttattttcgcctaatgccagattttttattcataaaaacCAGGCCA
ACTTTTCGGCggccccctctcaaaaaagtttcattaTCCTATCTGCACGT
ACGCAAAacttttccaaatatttgacatCCCTTCCCccttcatttgtttt
ttttttcagatcgCAGTATCGTGAGAGTCATACTCCACAAGCTTTTCAAT
TCGAAGTCTTAGAAAACGCCTATAAACAGgtacaatttttgttttattag
ggAATAAGTGTTATATACACAGAACCAGTTGGACACCCTCTTTTCTGGAA
AAGCGCGCAAAATCGTTCCTGCTGAGAAAAAGTACCCTGAAATCACAAAA
TCGAAAGATACATCATTCGATTTTGTGTCCTTAtccagggtgtcccgaaa
aaggTTTTATGTTAGACTATATCTACGATTAGAGTTGTAATAGGGACCCT
GCCCTAACAACAGTCACGTCTTTGTATCTCTTGCCTGTGCGACCTCTCCC
CCTCATGTTGAATCGTGTGGTAAAATCTGGCGGTAAACTAAAACTTATAA
TTCTGTGGAGCCCATAACtggaacacgcacggggaatttaaatttgttca
agttaacgaaattttgagttatgtctGAACATTTATATCTgaactgaaat
gaaaaaagaacgtgttcgagttaaagagtaaactctagtttagacggccg
actttctgccctgcctattctaattttTAGGGTAGGCAgaaagtgggcac
aaagttggcagttaatatctttgcttgaaaaagattgaaagaagacattg
cattgacgtcaaaagtgggcaatgcattgactttagacagcccactttaa
gcccactttaattcacaataatTAGAATAGGTAGAGCGAAAAgggggccg
tctaaactagagctaattCGAGTTTAGGTTCGAGTTAAACACGAGTTAAA
GATGGtcaaagagactccactgtatattaAAAGACAACCGCGTGTAACTT
TTAACTTGTTTGAATGCACTTTCAGTTTCTAGttattctctttttctttg
ttgtcAGTGTTCACAAGAAGATTTTAACCATGGTACAGAGTGTTTGGATT
TAGTTCAAAAATATTGTGGTGTTCGTCCAAAACTTGTCGATGGTCCCGAA
TATCTTTGGAAGGTGTGAtttctttatttatttcttatttacaGCGAGGA
AGCTTGACAAAATAAGAAGAATTGTCCTATATTCTAATCTAGCGACTCAC
TCAAATGAAATATGAGacaaatattttgcaaaaactTTTACACTTAATTT
TCGACAAGAAACTTCTTAGCTTTAGCTTCAAAAAGAAGGGAAATTATTAT
ACGCTAAGGGAACATTTTTGTCATTATTATGAGTACATGCACAATTAAAG
GATGTCATTTAACGTATcacctaccatttgcttactcAGCATTTTCAAAC
CAACCAAAGAAAGGACAACTTCTCTCCCTGCGCgagttaaaattttgata
aattattttgtttattctaCTTTGTCAGTATAGAGGCGCATTGATTAGCA
CATGAATTCATTTGTTATTGTAAtaacccaaaaaaaaaaacactctgagc
atgttttttttcattttgttttcagGTAACTCACCAGAAAGATATCATTT
TAATGGAATCGTTTTTACAACGTGAGTCATTATCacatttctttgatttt
tacaATCGCTAAAATAGATTTGGATGAAATACTGCATTGCTTTCAATCGT
GACGTTTTTTGACGACATGGTGCACCTGCATTAGGTGAATGGGGGAGGGG
CATGATTAAACAATAGGAGCTGGTCTGAGGAAATGTTTCAAATTTGATAA
CCAGGTATTTTGTGAAggtgaaaaatcaatttattttgaGCAAATAAGGC
ACTTTCCCGCCCCCGGAGGGGTACCAAGGTAAAAGGAGGGTAGGGCTATG
TGTCGCCCCAAACGGTTCGTTTTTTAGATCTTCACAAAATCCCAATAAGG
Gtcatgaaaatattattttcatgtcttttgtcgttttttgacgttttatc
GAATAATTCGAAAAGTAAGTGTTTAGAGAAAAAAACGTGGCAAGGTATTT
TTCGTCTATTATTCTGGATCATGATCatataaaaagttttattaaatTGC
CTACTTATCACTTTTTGAAGATGACATGGTAATCTTTCTTTTGTCATCTT
TTATTCCTTTgtcaaattgacaaaatttattgttgtcaGCCTTAATCGAT
AGAGAATTTAATAAGCTTTTCAAAATATACTTTTACTATTGAAATATATT
TGTATCGAAAGCTGTTAATAAAAGAGTCAAGTGTGGTGTCGAAGGTTTCC
ACCTTTCCATACCTTAAGACCTTATAAGGGTTCTAAAAACAGCTCAAATT
CCACATCGTGACCCTCAAAAGacaaaattttaagtaaaatagTCATAAAA
TTTACAACAATTTGTGTTTTTCCTCGATTTAAGCCCCTCTAAGGGTCTCC
GTTTTGATGGTCCTTCTAAGGGCCCGGCTGCCAAAAGTCGGTTGGCATGG
CACACACCCGTCACCccccaaaccccccccccctctgaCTTTTTCTCACt
gttgaaaatatagtaaatagTAAGAAACATCAGGGGGCTGTTCATTAGGC
ACCACGGTAAGTGAACGTACgagcaaaaacataaaaagttatctcttttt
ttttcaggagaAAAGGAGCATCGATGACTCAAAGGCGGACATTCGATTAG
AATTGATTATTAAAtgaattttagtgaaatttcataCATTATGATTGTTT
TAAtgaattgaatttttattttttgttttaaaattttatatattttttga
tatttttagcaATATTGTATTGACCCAATTTTATTTAATATATCGCACGA
ATACTCATAAAATTGATGTGTGTTATTCCTTTATACatatttgaaacatt
ttctgATTTCTCTTTCCTAGATATATAATACATCCTAAAACATATAAGGT
ACAAAATTTAGAATGATATATCACTTTTTTACTTCGGATTTATAGAGTTA
ACGAGTTAAGTGATACACATAATTTATTGTATTTGAGCAAAAACTATATA
TACATTTTGTCTGGAAAATAATAGCGGTACAGACGTAAAATCTGTTTTAA
ATTCGATGATTTCAATGGCAGTACAGAGAGAAATCTCGCGTGTAGAATAA
AATTGTAAATGAGCTAACTATGGCTTAGTGTTGCTTTTAGAAAACGTATC
TATCATCCATCGTTATTTTCGCCATCAAATGGAATTTTCCTTCAAGCCAC
TTCTTGcatgttatattgattgttttgTTCAGTTCCGGAACGATTTCCGT
TATACGGTAAAAATGGAACATACCGGATCCAAGAAGTACGATCTAGATAT
TTTTGTATATAAGGTAAATCGTACGTGGCAGAGTTCTCTTCTGCGGAAGC
CTCGTTGTCACGCCATGCTTCGATACCACGATCTTTTTTCGATCCCGGTA
AAATGTTATCTAGAAGACATGCAGTGATTCCACCGACCGCCATGTTGGTT
CCAAGAAGGACGCCTATGATTTGATCGAGTTCTGTTACGCCAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_038647XLOC_038647Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00061610-exon-scaffold_36-1491911889:1016153..1016408TCONS_00061610-exon-scaffold_36-1491911889:1016153..1016408Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1510915933:1016153..1016408TCONS_00061610-exon-scaffold_36-1510915933:1016153..1016408Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1575043694:1016153..1016408TCONS_00061610-exon-scaffold_36-1575043694:1016153..1016408Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1491911889:1016745..1017535TCONS_00061610-exon-scaffold_36-1491911889:1016745..1017535Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1510915933:1016745..1017535TCONS_00061610-exon-scaffold_36-1510915933:1016745..1017535Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1575043694:1016745..1017535TCONS_00061610-exon-scaffold_36-1575043694:1016745..1017535Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1491911889:1018236..1018291TCONS_00061610-exon-scaffold_36-1491911889:1018236..1018291Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1510915933:1018236..1018291TCONS_00061610-exon-scaffold_36-1510915933:1018236..1018291Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1575043694:1018236..1018291TCONS_00061610-exon-scaffold_36-1575043694:1018236..1018291Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1491911889:1018822..1018890TCONS_00061610-exon-scaffold_36-1491911889:1018822..1018890Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1510915933:1018822..1018890TCONS_00061610-exon-scaffold_36-1510915933:1018822..1018890Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1575043694:1018822..1018890TCONS_00061610-exon-scaffold_36-1575043694:1018822..1018890Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1491911889:1019578..1019633TCONS_00061610-exon-scaffold_36-1491911889:1019578..1019633Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1510915933:1019578..1019633TCONS_00061610-exon-scaffold_36-1510915933:1019578..1019633Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1575043694:1019578..1019633TCONS_00061610-exon-scaffold_36-1575043694:1019578..1019633Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1491911889:1019854..1019908TCONS_00061610-exon-scaffold_36-1491911889:1019854..1019908Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1510915933:1019854..1019908TCONS_00061610-exon-scaffold_36-1510915933:1019854..1019908Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1575043694:1019854..1019908TCONS_00061610-exon-scaffold_36-1575043694:1019854..1019908Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1491911889:1021535..1021615TCONS_00061610-exon-scaffold_36-1491911889:1021535..1021615Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1510915933:1021535..1021615TCONS_00061610-exon-scaffold_36-1510915933:1021535..1021615Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1575043694:1021535..1021615TCONS_00061610-exon-scaffold_36-1575043694:1021535..1021615Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1491911889:1021904..1021983TCONS_00061610-exon-scaffold_36-1491911889:1021904..1021983Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1510915933:1021904..1021983TCONS_00061610-exon-scaffold_36-1510915933:1021904..1021983Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1575043694:1021904..1021983TCONS_00061610-exon-scaffold_36-1575043694:1021904..1021983Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1491911889:1022812..1022881TCONS_00061610-exon-scaffold_36-1491911889:1022812..1022881Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1510915933:1022812..1022881TCONS_00061610-exon-scaffold_36-1510915933:1022812..1022881Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1575043694:1022812..1022881TCONS_00061610-exon-scaffold_36-1575043694:1022812..1022881Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1491911889:1023710..1023814TCONS_00061610-exon-scaffold_36-1491911889:1023710..1023814Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1510915933:1023710..1023814TCONS_00061610-exon-scaffold_36-1510915933:1023710..1023814Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1575043694:1023710..1023814TCONS_00061610-exon-scaffold_36-1575043694:1023710..1023814Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1491911889:1024278..1024323TCONS_00061610-exon-scaffold_36-1491911889:1024278..1024323Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1510915933:1024278..1024323TCONS_00061610-exon-scaffold_36-1510915933:1024278..1024323Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1575043694:1024278..1024323TCONS_00061610-exon-scaffold_36-1575043694:1024278..1024323Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1491911889:1025363..1026247TCONS_00061610-exon-scaffold_36-1491911889:1025363..1026247Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1510915933:1025363..1026247TCONS_00061610-exon-scaffold_36-1510915933:1025363..1026247Clytia hemisphaericaexon
TCONS_00061610-exon-scaffold_36-1575043694:1025363..1026247TCONS_00061610-exon-scaffold_36-1575043694:1025363..1026247Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:1016153..1026247 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.08933	5.2157	2.55042	1.47549	1.31591	1.49387	1.96523	1.30524	0.793162	0.923412	1.28886	1.02911	1.43679	0.95408	0.810838	0.95861	1.6677	1.82936	0.265442	0.351424	1.28489	2.74869	4.98883	2.99211	1.20154	3.4813	0.61549	3.35279	0.928931	1.12702
Blast
[Close]
BLAST of TCONS_00061610 vs. Swiss-Prot (Human)
Match: ISPD (D-ribitol-5-phosphate cytidylyltransferase OS=Homo sapiens GN=ISPD PE=1 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 4.799e-46
Identity = 82/192 (42.71%), Postives = 122/192 (63.54%), Query Frame = 3 
Query: 1116 WIEKVVVVISEDWMEFTQEIIDINKYDKVKLVIGKDTRHRSINVGVNSIES-------SADDIVIVHDAVRPFLKEDFLKQLVEQAIINKAAGAVRALVSTVVKCDVDGFMESSLVRSQYRESHTPQAFQFEVLENAYKQCSQEDFNHGTECLDLVQKYCGVRPKLVDGPEYLWKVTHQKDIILMESFLQQK 1670
            WI+ +VV ++ + ME  + II   ++ ++ LV    TRHRSI  G+ ++         S  ++VI+HDAVRPF++E  L ++V  A  + AAGA+R LVSTVV    DG ++ SL R+++R S  PQAF F+V+  AY+QCS  D   GTECL L  KYC  + KLV+G   LWKVT+++D+   ES ++++
Sbjct:   89 WIKDIVVAVTGENMEVMKSIIQKYQHKRISLVEAGVTRHRSIFNGLKALAEDQINSKLSKPEVVIIHDAVRPFVEEGVLLKVVTAAKEHGAAGAIRPLVSTVVSPSADGCLDYSLERARHRASEMPQAFLFDVIYEAYQQCSDYDLEFGTECLQLALKYCCTKAKLVEGSPDLWKVTYKRDLYAAESIIKER 280

HSP 2 Score: 44.2838 bits (103), Expect = 4.799e-46
Identity = 19/43 (44.19%), Postives = 27/43 (62.79%), Query Frame = 1 
Query:  985 VNAVLPAAGIGTRFGAQKPKQFTEVDGKPIICYTIEAFQSLVY 1113
            V AVLPA G G R G   PKQF  +  +P+I YT++A + + +
Sbjct:   47 VAAVLPAGGCGERMGVPTPKQFCPILERPLISYTLQALERVCW 89
The following BLAST results are available for this feature:
BLAST of TCONS_00061610 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ISPD4.799e-4642.71D-ribitol-5-phosphate cytidylyltransferase OS=Homo... [more]
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