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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00061607 ID=TCONS_00061607|Name=TCONS_00061607|organism=Clytia hemisphaerica|type=transcript|length=1215bp
ACACAATCCACCCAATTGTTAACACGTTCTATTTTTAAAGTAGAATAAAA
TGCCTGCTAACAAAACACATCTGATAACAGCACCAAGCCCATGTAACGGG
ACTACCGATCCATATGGAGCACAATGTGTGGACAATAAAGGTCATGACTT
GAAAGAACATTGGTTCAGATGTTTTGATCATTCACCAGAAAACATCATCA
GAAATTCAATAATTGGGACAGTCCTTTTGGCAATATCAGCCCTGGGTACG
CTCAGTAACCTTTTTATATGCTTGGTggttttcaaattcaagatttACAA
GAATACGCAAGAAATGTTGATTCTACTGCTTGccatttctgattttttta
tctCGCTGTTTTTGATTTCAACAGAGAGTGTCTTGTTTCTTTGCATGAAT
CCGATCTTTCAAGCCACAATCCCGATTTGTAGACCATATGATATATTTTA
CATATTCGTTACAATGTGGGACACCATATTACCGATATCATGTTTTGTTG
TTATGTTCATGAGCATCGAACGCTTCTTAGCGATACGTTTCCCGTTCAAG
ATCCGGCAAATCAAGCGACGCTATATTGTATTGGGATACGTTATGGCATG
GGTTTACACTTTTGGTGCGTCCGTAGTCGGATATCTAACTCACTATCCTG
GTTGGATCCGAACAATGGTGTTGAATATCAGTAATATTTTACCACTATTG
ATAAATTCTATGGTTTATGTATACATCCAACGTCTTGTATACAAGCACTC
GAAAGCTATAAACAGACAACGGGTAAGTGTCGTAAAGCAGTCAACCGTTG
TATGTCATGAAAACCGACAGAGTAGAGGAACCTATAAGAAAAACGTTTTG
TTTCTATACGTAGCTGTATCTTTTTTCGTCTTTTGGTTACCGTTTATTTG
CTATGAGATAGCTTTCATTATGAATCCAACGCGTTTCGATTCTTGTACAT
ACATTACTCAAATCATTCTATCTTGTTTGGTGTATCTAAACAGTATAGGG
AATGTGTTCATTTATGGAGCTTCAAGTAAACCTTATAGAAAAGCTTATTG
GAGATTCATGGAGAATTTTTGTTGTAAGATTTGCAGCGAGAAGTCTTCCA
CTGTAAACCCAATTGAAGGTGTTTCGTTATCTCAAAATAACTTGAGAATT
TAagcaaactttctttttatattttagcgGTTAACTTTGTAAAACTTATA
tctcaatacaccttt Run BLAST on NCBI protein sequence of TCONS_00061607-protein >TCONS_00061607-protein ID=TCONS_00061607-protein|Name=TCONS_00061607-protein|organism=Clytia hemisphaerica|type=polypeptide|length=367bp
MPANKTHLITAPSPCNGTTDPYGAQCVDNKGHDLKEHWFRCFDHSPENII
RNSIIGTVLLAISALGTLSNLFICLVVFKFKIYKNTQEMLILLLAISDFF
ISLFLISTESVLFLCMNPIFQATIPICRPYDIFYIFVTMWDTILPISCFV
VMFMSIERFLAIRFPFKIRQIKRRYIVLGYVMAWVYTFGASVVGYLTHYP
GWIRTMVLNISNILPLLINSMVYVYIQRLVYKHSKAINRQRVSVVKQSTV
VCHENRQSRGTYKKNVLFLYVAVSFFVFWLPFICYEIAFIMNPTRFDSCT
YITQIILSCLVYLNSIGNVFIYGASSKPYRKAYWRFMENFCCKICSEKSS
TVNPIEGVSLSQNNLRI Run BLAST on NCBI transcript from alignment at scaffold_36:984146..985875+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00061607 ID=TCONS_00061607|Name=TCONS_00061607|organism=Clytia hemisphaerica|type=transcript|length=1730bp|location=Sequence derived from alignment at scaffold_36:984146..985875+ (Clytia hemisphaerica)
ACACAATCCACCCAATTGTTAACACGTTCTATTTTTAAAGTAGAATAAAA
TGCCTGCTAACAAAACACATCTGATAACAGCACCAAGCCCATGTAACGGG
ACTACCGATCCATATGGAGCACAATGTGTGGACAATAAAGGTCATGACTT
GAAAGAACATTGGTTCAGATGTTTTGATCATTCACCAGAAAACATCATCA
GAAATTCAATAATTGGGACAGTCCTTTTGGCAATATCAGCCCTGGGTACG
CTCAGTAACCTTTTTATATGCTTGGTggttttcaaattcaagatttACAA
GAATACGCAAGAAATGTTGATTCTACTGCTTGccatttctgattttttta
tctCGCTGTTTTTGATTTCAACAGAGAGTGTCTTGTTTCTTTGCATGAAT
CCGATCTTTCAAGCCACAATCCCGATTTGTAGACCATATGATATATTTTA
CATATTCGTTACAATGTGGTAagtaaattttaagatttcaacTTCGGAAT
TTCTGACTCCAGGTTACTGAGTAATaagtcccaatggggataggaAATCT
TTAGGTgcggaaattctattgtttcaaagCTCAATAACCTAGAAAAGATT
CTatatattttagatttttctcaGTTCATCTtagatttccaatgaaaatg
aagttttaaggtatttttctcaTCTGGGACAATTCATTGGTCAATTTTTG
CAATGGGAAGGTCGTCCAACCCGGCCTTTTGACACAAGTGATCTTAGAAT
ATTGAAATACGTCAACTATGACATTGCACGCCTTAGCTTTGAGCTTTTTA
TACGTaacattttttatcatatcacccttacagtgcactttgggaggCTT
GGGGAAAAGATCCTTAAGGACCGCATTGGAAAAGTCATTTAGTTTGAGTG
CGTCCCCCCGGATGAGGATATTTGTGCAAGATTTGTACCGTCATAGTAAC
TATTAAAATCCACTTTCTTTTTCGTATTTCTAGGGACACCATATTACCGA
TATCATGTTTTGTTGTTATGTTCATGAGCATCGAACGCTTCTTAGCGATA
CGTTTCCCGTTCAAGATCCGGCAAATCAAGCGACGCTATATTGTATTGGG
ATACGTTATGGCATGGGTTTACACTTTTGGTGCGTCCGTAGTCGGATATC
TAACTCACTATCCTGGTTGGATCCGAACAATGGTGTTGAATATCAGTAAT
ATTTTACCACTATTGATAAATTCTATGGTTTATGTATACATCCAACGTCT
TGTATACAAGCACTCGAAAGCTATAAACAGACAACGGGTAAGTGTCGTAA
AGCAGTCAACCGTTGTATGTCATGAAAACCGACAGAGTAGAGGAACCTAT
AAGAAAAACGTTTTGTTTCTATACGTAGCTGTATCTTTTTTCGTCTTTTG
GTTACCGTTTATTTGCTATGAGATAGCTTTCATTATGAATCCAACGCGTT
TCGATTCTTGTACATACATTACTCAAATCATTCTATCTTGTTTGGTGTAT
CTAAACAGTATAGGGAATGTGTTCATTTATGGAGCTTCAAGTAAACCTTA
TAGAAAAGCTTATTGGAGATTCATGGAGAATTTTTGTTGTAAGATTTGCA
GCGAGAAGTCTTCCACTGTAAACCCAATTGAAGGTGTTTCGTTATCTCAA
AATAACTTGAGAATTTAagcaaactttctttttatattttagcgGTTAAC
TTTGTAAAACTTATAtctcaatacaccttt Coding sequence (CDS) from alignment at scaffold_36:984146..985875+ >TCONS_00061607 ID=TCONS_00061607|Name=TCONS_00061607|organism=Clytia hemisphaerica|type=CDS|length=2208bp|location=Sequence derived from alignment at scaffold_36:984146..985875+ (Clytia hemisphaerica)
ATGCCTGCTAACAAAACACATCTGATAACAGCACCAAGCCCATGTAACGG
GACTACCGATCCATATGGAGCACAATGTGTGGACAATAAAGGTCATGACT
TGAAAGAACATTGGTTCAGATGTTTTGATCATTCACCAGAAAACATCATC
AGAAATTCAATAATTGGGACAGTCCTTTTGGCAATATCAGCCCTGGGTAC
GCTCAGTAACCTTTTTATATGCTTGGTggttttcaaattcaagatttACA
AGAATACGCAAGAAATGTTGATTCTACTGCTTGccatttctgattttttt
atctCGCTGTTTTTGATTTCAACAGAGAGTGTCTTGTTTCTTTGCATGAA
TCCGATCTTTCAAGCCACAATCCCGATTTGTAGACCATATGATATATTTT
ACATATTCGTTACAATGTGGGACACCATATTACCGATATCATGTTTTGTT
GTTATGTTCATGAGCATCGAACGCTTCTTAGCGATACGTTTCCCGTTCAA
GATCCGGCAAATCAAGCGACGCTATATTGTATTGGGATACGTTATGGCAT
GGGTTTACACTTTTGGTGCGTCCGTAGTCGGATATCTAACTCACTATCCT
GGTTGGATCCGAACAATGGTGTTGAATATCAGTAATATTTTACCACTATT
GATAAATTCTATGGTTTATGTATACATCCAACGTCTTGTATACAAGCACT
CGAAAGCTATAAACAGACAACGGGTAAGTGTCGTAAAGCAGTCAACCGTT
GTATGTCATGAAAACCGACAGAGTAGAGGAACCTATAAGAAAAACGTTTT
GTTTCTATACGTAGCTGTATCTTTTTTCGTCTTTTGGTTACCGTTTATTT
GCTATGAGATAGCTTTCATTATGAATCCAACGCGTTTCGATTCTTGTACA
TACATTACTCAAATCATTCTATCTTGTTTGGTGTATCTAAACAGTATAGG
GAATGTGTTCATTTATGGAGCTTCAAGTAAACCTTATAGAAAAGCTTATT
GGAGATTCATGGAGAATTTTTGTTGTAAGATTTGCAGCGAGAAGTCTTCC
ACTGTAAACCCAATTGAAGGTGTTTCGTTATCTCAAAATAACTTGAGAAT
TTAaATGCCTGCTAACAAAACACATCTGATAACAGCACCAAGCCCATGTA
ACGGGACTACCGATCCATATGGAGCACAATGTGTGGACAATAAAGGTCAT
GACTTGAAAGAACATTGGTTCAGATGTTTTGATCATTCACCAGAAAACAT
CATCAGAAATTCAATAATTGGGACAGTCCTTTTGGCAATATCAGCCCTGG
GTACGCTCAGTAACCTTTTTATATGCTTGGTggttttcaaattcaagatt
tACAAGAATACGCAAGAAATGTTGATTCTACTGCTTGccatttctgattt
ttttatctCGCTGTTTTTGATTTCAACAGAGAGTGTCTTGTTTCTTTGCA
TGAATCCGATCTTTCAAGCCACAATCCCGATTTGTAGACCATATGATATA
TTTTACATATTCGTTACAATGTGGGACACCATATTACCGATATCATGTTT
TGTTGTTATGTTCATGAGCATCGAACGCTTCTTAGCGATACGTTTCCCGT
TCAAGATCCGGCAAATCAAGCGACGCTATATTGTATTGGGATACGTTATG
GCATGGGTTTACACTTTTGGTGCGTCCGTAGTCGGATATCTAACTCACTA
TCCTGGTTGGATCCGAACAATGGTGTTGAATATCAGTAATATTTTACCAC
TATTGATAAATTCTATGGTTTATGTATACATCCAACGTCTTGTATACAAG
CACTCGAAAGCTATAAACAGACAACGGGTAAGTGTCGTAAAGCAGTCAAC
CGTTGTATGTCATGAAAACCGACAGAGTAGAGGAACCTATAAGAAAAACG
TTTTGTTTCTATACGTAGCTGTATCTTTTTTCGTCTTTTGGTTACCGTTT
ATTTGCTATGAGATAGCTTTCATTATGAATCCAACGCGTTTCGATTCTTG
TACATACATTACTCAAATCATTCTATCTTGTTTGGTGTATCTAAACAGTA
TAGGGAATGTGTTCATTTATGGAGCTTCAAGTAAACCTTATAGAAAAGCT
TATTGGAGATTCATGGAGAATTTTTGTTGTAAGATTTGCAGCGAGAAGTC
TTCCACTGTAAACCCAATTGAAGGTGTTTCGTTATCTCAAAATAACTTGA
GAATTTAa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00061607-exon-scaffold_36-1491911889:984146..984613 | TCONS_00061607-exon-scaffold_36-1491911889:984146..984613 | Clytia hemisphaerica | exon |
| TCONS_00061607-exon-scaffold_36-1510915933:984146..984613 | TCONS_00061607-exon-scaffold_36-1510915933:984146..984613 | Clytia hemisphaerica | exon |
| TCONS_00061607-exon-scaffold_36-1575043694:984146..984613 | TCONS_00061607-exon-scaffold_36-1575043694:984146..984613 | Clytia hemisphaerica | exon |
| TCONS_00061607-exon-scaffold_36-1491911889:985129..985875 | TCONS_00061607-exon-scaffold_36-1491911889:985129..985875 | Clytia hemisphaerica | exon |
| TCONS_00061607-exon-scaffold_36-1510915933:985129..985875 | TCONS_00061607-exon-scaffold_36-1510915933:985129..985875 | Clytia hemisphaerica | exon |
| TCONS_00061607-exon-scaffold_36-1575043694:985129..985875 | TCONS_00061607-exon-scaffold_36-1575043694:985129..985875 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_36 | supercontig | scaffold_36:984146..985875 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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